PDB Short entry for 4OP0 HEADER LIGASE 04-FEB-14 4OP0 TITLE CRYSTAL STRUCTURE OF BIOTIN PROTEIN LIGASE (RV3279C) OF MYCOBACTERIUM TITLE 2 TUBERCULOSIS, COMPLEXED WITH BIOTINYL-5'-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIRA BIFUNCTIONAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BIOTIN OPERON REPRESSOR + BIOTIN--[ACETYL-COA-CARBOXYLASE] COMPND 5 SYNTHETASE (BIOTIN--PROTEIN LIGASE); COMPND 6 EC: 6.3.4.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: BIRA, MT3379, RV3279C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS BIRA, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.MA,M.WILMANNS,Y.AKHTER REVDAT 4 20-SEP-23 4OP0 1 REMARK SEQADV REVDAT 3 22-NOV-17 4OP0 1 REMARK REVDAT 2 02-JUL-14 4OP0 1 JRNL REVDAT 1 30-APR-14 4OP0 0 JRNL AUTH Q.MA,Y.AKHTER,M.WILMANNS,M.T.EHEBAUER JRNL TITL ACTIVE SITE CONFORMATIONAL CHANGES UPON REACTION JRNL TITL 2 INTERMEDIATE BIOTINYL-5'-AMP BINDING IN BIOTIN PROTEIN JRNL TITL 3 LIGASE FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF PROTEIN SCI. V. 23 932 2014 JRNL REFN ISSN 0961-8368 JRNL PMID 24723382 JRNL DOI 10.1002/PRO.2475 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3776 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 1.37000 REMARK 3 B33 (A**2) : -1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.687 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3930 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2583 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5372 ; 1.749 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6212 ; 1.001 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 6.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;39.506 ;23.165 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;13.586 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;18.981 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4414 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 755 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 775 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2881 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1910 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2230 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 276 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.324 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.248 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2618 ; 0.916 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1063 ; 0.287 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4053 ; 1.401 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1502 ; 2.227 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1319 ; 3.199 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3930 1.7400 31.3670 REMARK 3 T TENSOR REMARK 3 T11: -0.0676 T22: -0.0495 REMARK 3 T33: 0.0094 T12: -0.0242 REMARK 3 T13: 0.0195 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.7521 L22: 1.4395 REMARK 3 L33: 0.9207 L12: -0.1481 REMARK 3 L13: -0.1327 L23: -0.0993 REMARK 3 S TENSOR REMARK 3 S11: 0.0255 S12: -0.1112 S13: 0.2345 REMARK 3 S21: -0.0575 S22: 0.0147 S23: -0.0300 REMARK 3 S31: -0.1686 S32: 0.0898 S33: -0.0402 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2200 -3.1900 27.1490 REMARK 3 T TENSOR REMARK 3 T11: -0.0974 T22: -0.0387 REMARK 3 T33: -0.0257 T12: -0.0174 REMARK 3 T13: -0.0044 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.6305 L22: 1.1420 REMARK 3 L33: 1.9307 L12: -0.3436 REMARK 3 L13: -0.6977 L23: 0.2357 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: 0.0800 S13: 0.0481 REMARK 3 S21: -0.0713 S22: -0.0186 S23: 0.1055 REMARK 3 S31: -0.0074 S32: -0.2730 S33: -0.0601 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3950 -3.4230 38.8530 REMARK 3 T TENSOR REMARK 3 T11: -0.1055 T22: -0.0270 REMARK 3 T33: 0.0073 T12: 0.0133 REMARK 3 T13: 0.0110 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.0340 L22: 1.9986 REMARK 3 L33: 1.7786 L12: 1.1721 REMARK 3 L13: -0.8195 L23: -0.7070 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: -0.0466 S13: 0.0610 REMARK 3 S21: 0.0785 S22: 0.0164 S23: -0.0199 REMARK 3 S31: -0.0121 S32: -0.1719 S33: -0.0608 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 98 REMARK 3 ORIGIN FOR THE GROUP (A): -24.7870 3.4500 68.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.0299 T22: -0.0682 REMARK 3 T33: -0.0506 T12: 0.0780 REMARK 3 T13: -0.0546 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.2155 L22: 0.5037 REMARK 3 L33: 2.3407 L12: -0.4461 REMARK 3 L13: -0.6625 L23: 0.4779 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.0806 S13: 0.1803 REMARK 3 S21: -0.0125 S22: -0.0758 S23: 0.0156 REMARK 3 S31: -0.2204 S32: -0.2402 S33: 0.0728 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 99 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8100 -2.0500 72.3480 REMARK 3 T TENSOR REMARK 3 T11: -0.0379 T22: -0.1153 REMARK 3 T33: -0.0913 T12: 0.0511 REMARK 3 T13: -0.0360 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.5011 L22: 0.9533 REMARK 3 L33: 2.0103 L12: 0.1802 REMARK 3 L13: -0.6384 L23: 0.1493 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.1214 S13: -0.0111 REMARK 3 S21: 0.0297 S22: -0.0460 S23: -0.0137 REMARK 3 S31: -0.0582 S32: 0.0726 S33: 0.0931 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 201 B 265 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7320 -5.9870 59.4120 REMARK 3 T TENSOR REMARK 3 T11: -0.1005 T22: -0.0820 REMARK 3 T33: -0.0794 T12: 0.0154 REMARK 3 T13: -0.0194 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.8994 L22: 3.2623 REMARK 3 L33: 3.1382 L12: -0.3086 REMARK 3 L13: -0.5880 L23: 2.1828 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: 0.0624 S13: 0.0624 REMARK 3 S21: 0.0601 S22: 0.2215 S23: -0.1329 REMARK 3 S31: 0.0122 S32: 0.3270 S33: -0.1074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : FIXED EXIT DOUBLE CRYSTAL REMARK 200 SI(111), HORIZONTALLY FOCUSING REMARK 200 OPTICS : MIRRORS: 1: RH-COATED, ZERODUR, REMARK 200 VERTICAL FOCUSING POSSIBLE, 2: REMARK 200 RH-COATED, ZERODUR, VERTICALLY REMARK 200 FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51119 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 31.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CGH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 7.8, 0.2 M LITHIUM REMARK 280 SULFATE, 25% PEG4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.70300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 118 REMARK 465 VAL A 119 REMARK 465 PRO A 120 REMARK 465 PRO A 121 REMARK 465 ALA A 122 REMARK 465 GLU A 123 REMARK 465 ARG A 266 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 22 REMARK 465 ALA B 23 REMARK 465 ALA B 118 REMARK 465 VAL B 119 REMARK 465 PRO B 120 REMARK 465 PRO B 121 REMARK 465 ARG B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 19 CD OE1 NE2 REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 192 CD NE CZ NH1 NH2 REMARK 470 GLN A 207 CD OE1 NE2 REMARK 470 ARG B 6 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 28 CD NE CZ NH1 NH2 REMARK 470 GLN B 96 CB CG CD OE1 NE2 REMARK 470 ILE B 117 CG1 CG2 CD1 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 ARG B 135 CD NE CZ NH1 NH2 REMARK 470 ARG B 189 CD NE CZ NH1 NH2 REMARK 470 ARG B 215 NE CZ NH1 NH2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 441 O HOH A 487 1.82 REMARK 500 O HOH A 423 O HOH A 497 2.06 REMARK 500 OD1 ASP B 3 O HOH B 461 2.12 REMARK 500 O HOH A 438 O HOH B 564 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 494 O HOH B 501 1455 1.89 REMARK 500 CG1 VAL A 93 O VAL A 166 2656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 LEU B 107 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 65 51.32 -154.15 REMARK 500 VAL A 93 69.61 90.84 REMARK 500 VAL A 166 -36.18 -134.36 REMARK 500 ASP A 167 132.91 -177.10 REMARK 500 PRO A 228 151.38 -49.23 REMARK 500 ALA A 259 -148.13 -163.18 REMARK 500 ALA B 65 57.05 -146.23 REMARK 500 PRO B 94 138.44 -36.54 REMARK 500 ALA B 147 78.73 -157.15 REMARK 500 VAL B 166 -44.71 -131.53 REMARK 500 ASP B 167 133.93 -172.93 REMARK 500 ALA B 180 66.79 33.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 96 ALA B 97 143.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BT5 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BT5 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 DBREF 4OP0 A 3 266 UNP P96884 P96884_MYCTU 3 266 DBREF 4OP0 B 3 266 UNP P96884 P96884_MYCTU 3 266 SEQADV 4OP0 GLY A -1 UNP P96884 EXPRESSION TAG SEQADV 4OP0 ALA A 0 UNP P96884 EXPRESSION TAG SEQADV 4OP0 MET A 1 UNP P96884 EXPRESSION TAG SEQADV 4OP0 ALA A 2 UNP P96884 EXPRESSION TAG SEQADV 4OP0 GLY B -1 UNP P96884 EXPRESSION TAG SEQADV 4OP0 ALA B 0 UNP P96884 EXPRESSION TAG SEQADV 4OP0 MET B 1 UNP P96884 EXPRESSION TAG SEQADV 4OP0 ALA B 2 UNP P96884 EXPRESSION TAG SEQRES 1 A 268 GLY ALA MET ALA ASP ARG ASP ARG LEU ARG PRO PRO LEU SEQRES 2 A 268 ASP GLU ARG SER LEU ARG ASP GLN LEU ILE GLY ALA GLY SEQRES 3 A 268 SER GLY TRP ARG GLN LEU ASP VAL VAL ALA GLN THR GLY SEQRES 4 A 268 SER THR ASN ALA ASP LEU LEU ALA ARG ALA ALA SER GLY SEQRES 5 A 268 ALA ASP ILE ASP GLY VAL VAL LEU ILE ALA GLU HIS GLN SEQRES 6 A 268 THR ALA GLY ARG GLY ARG HIS GLY ARG GLY TRP ALA ALA SEQRES 7 A 268 THR ALA ARG ALA GLN ILE ILE LEU SER VAL GLY VAL ARG SEQRES 8 A 268 VAL VAL ASP VAL PRO VAL GLN ALA TRP GLY TRP LEU SER SEQRES 9 A 268 LEU ALA ALA GLY LEU ALA VAL LEU ASP SER VAL ALA PRO SEQRES 10 A 268 LEU ILE ALA VAL PRO PRO ALA GLU THR GLY LEU LYS TRP SEQRES 11 A 268 PRO ASN ASP VAL LEU ALA ARG GLY GLY LYS LEU ALA GLY SEQRES 12 A 268 ILE LEU ALA GLU VAL ALA GLN PRO PHE VAL VAL LEU GLY SEQRES 13 A 268 VAL GLY LEU ASN VAL THR GLN ALA PRO GLU GLU VAL ASP SEQRES 14 A 268 PRO ASP ALA THR SER LEU LEU ASP LEU GLY VAL ALA ALA SEQRES 15 A 268 PRO ASP ARG ASN ARG ILE ALA SER ARG LEU LEU ARG GLU SEQRES 16 A 268 LEU GLU ALA ARG ILE ILE GLN TRP ARG ASN ALA ASN PRO SEQRES 17 A 268 GLN LEU ALA ALA ASP TYR ARG ALA ARG SER LEU THR ILE SEQRES 18 A 268 GLY SER ARG VAL ARG VAL GLU LEU PRO GLY GLY GLN ASP SEQRES 19 A 268 VAL VAL GLY ILE ALA ARG ASP ILE ASP ASP GLN GLY ARG SEQRES 20 A 268 LEU CYS LEU ASP VAL GLY GLY ARG THR VAL VAL VAL SER SEQRES 21 A 268 ALA GLY ASP VAL VAL HIS LEU ARG SEQRES 1 B 268 GLY ALA MET ALA ASP ARG ASP ARG LEU ARG PRO PRO LEU SEQRES 2 B 268 ASP GLU ARG SER LEU ARG ASP GLN LEU ILE GLY ALA GLY SEQRES 3 B 268 SER GLY TRP ARG GLN LEU ASP VAL VAL ALA GLN THR GLY SEQRES 4 B 268 SER THR ASN ALA ASP LEU LEU ALA ARG ALA ALA SER GLY SEQRES 5 B 268 ALA ASP ILE ASP GLY VAL VAL LEU ILE ALA GLU HIS GLN SEQRES 6 B 268 THR ALA GLY ARG GLY ARG HIS GLY ARG GLY TRP ALA ALA SEQRES 7 B 268 THR ALA ARG ALA GLN ILE ILE LEU SER VAL GLY VAL ARG SEQRES 8 B 268 VAL VAL ASP VAL PRO VAL GLN ALA TRP GLY TRP LEU SER SEQRES 9 B 268 LEU ALA ALA GLY LEU ALA VAL LEU ASP SER VAL ALA PRO SEQRES 10 B 268 LEU ILE ALA VAL PRO PRO ALA GLU THR GLY LEU LYS TRP SEQRES 11 B 268 PRO ASN ASP VAL LEU ALA ARG GLY GLY LYS LEU ALA GLY SEQRES 12 B 268 ILE LEU ALA GLU VAL ALA GLN PRO PHE VAL VAL LEU GLY SEQRES 13 B 268 VAL GLY LEU ASN VAL THR GLN ALA PRO GLU GLU VAL ASP SEQRES 14 B 268 PRO ASP ALA THR SER LEU LEU ASP LEU GLY VAL ALA ALA SEQRES 15 B 268 PRO ASP ARG ASN ARG ILE ALA SER ARG LEU LEU ARG GLU SEQRES 16 B 268 LEU GLU ALA ARG ILE ILE GLN TRP ARG ASN ALA ASN PRO SEQRES 17 B 268 GLN LEU ALA ALA ASP TYR ARG ALA ARG SER LEU THR ILE SEQRES 18 B 268 GLY SER ARG VAL ARG VAL GLU LEU PRO GLY GLY GLN ASP SEQRES 19 B 268 VAL VAL GLY ILE ALA ARG ASP ILE ASP ASP GLN GLY ARG SEQRES 20 B 268 LEU CYS LEU ASP VAL GLY GLY ARG THR VAL VAL VAL SER SEQRES 21 B 268 ALA GLY ASP VAL VAL HIS LEU ARG HET BT5 A 301 38 HET BT5 B 301 38 HET SO4 B 302 5 HETNAM BT5 BIOTINYL-5-AMP HETNAM SO4 SULFATE ION FORMUL 3 BT5 2(C20 H28 N7 O9 P S) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *372(H2 O) HELIX 1 1 MET A 1 ARG A 6 1 6 HELIX 2 2 ASP A 12 ALA A 23 1 12 HELIX 3 3 SER A 38 SER A 49 1 12 HELIX 4 4 GLY A 99 ALA A 114 1 16 HELIX 5 5 ALA A 162 ASP A 167 1 6 HELIX 6 6 LEU A 173 GLY A 177 5 5 HELIX 7 7 ASP A 182 ALA A 204 1 23 HELIX 8 8 PRO A 206 SER A 216 1 11 HELIX 9 9 ARG B 4 ARG B 8 5 5 HELIX 10 10 ASP B 12 ILE B 21 1 10 HELIX 11 11 SER B 38 SER B 49 1 12 HELIX 12 12 GLN B 96 GLY B 99 5 4 HELIX 13 13 TRP B 100 ALA B 114 1 15 HELIX 14 14 PRO B 115 ILE B 117 5 3 HELIX 15 15 ALA B 162 ASP B 167 1 6 HELIX 16 16 ASP B 182 ASN B 203 1 22 HELIX 17 17 PRO B 206 SER B 216 1 11 SHEET 1 A 7 GLN A 29 THR A 36 0 SHEET 2 A 7 VAL A 56 GLN A 63 1 O GLU A 61 N VAL A 33 SHEET 3 A 7 GLN A 81 ARG A 89 -1 O SER A 85 N LEU A 58 SHEET 4 A 7 PHE A 150 ASN A 158 -1 O VAL A 155 N LEU A 84 SHEET 5 A 7 GLY A 137 ALA A 147 -1 N ALA A 147 O PHE A 150 SHEET 6 A 7 ASP A 131 ALA A 134 -1 N VAL A 132 O ALA A 140 SHEET 7 A 7 GLY A 125 LYS A 127 -1 N GLY A 125 O LEU A 133 SHEET 1 B 2 GLY A 66 ARG A 67 0 SHEET 2 B 2 GLY A 73 TRP A 74 -1 O TRP A 74 N GLY A 66 SHEET 1 C10 ASP A 261 HIS A 264 0 SHEET 2 C10 ARG A 222 LEU A 227 -1 N ARG A 224 O VAL A 263 SHEET 3 C10 GLN A 231 ILE A 240 -1 O VAL A 233 N VAL A 225 SHEET 4 C10 LEU A 246 VAL A 250 -1 O ASP A 249 N ILE A 236 SHEET 5 C10 ARG A 253 VAL A 257 -1 O ARG A 253 N VAL A 250 SHEET 6 C10 ARG B 253 VAL B 257 -1 O VAL B 256 N VAL A 256 SHEET 7 C10 LEU B 246 VAL B 250 -1 N LEU B 248 O VAL B 255 SHEET 8 C10 GLN B 231 ILE B 240 -1 N ASP B 239 O CYS B 247 SHEET 9 C10 ARG B 222 LEU B 227 -1 N VAL B 225 O VAL B 233 SHEET 10 C10 ASP B 261 HIS B 264 -1 O VAL B 263 N ARG B 224 SHEET 1 D 7 GLN B 29 THR B 36 0 SHEET 2 D 7 VAL B 56 GLN B 63 1 O ILE B 59 N VAL B 33 SHEET 3 D 7 GLN B 81 ARG B 89 -1 O SER B 85 N LEU B 58 SHEET 4 D 7 PHE B 150 ASN B 158 -1 O LEU B 153 N VAL B 86 SHEET 5 D 7 GLY B 137 ALA B 147 -1 N ALA B 147 O PHE B 150 SHEET 6 D 7 ASP B 131 ALA B 134 -1 N ALA B 134 O GLY B 137 SHEET 7 D 7 THR B 124 LYS B 127 -1 N GLY B 125 O LEU B 133 SHEET 1 E 2 GLY B 66 ARG B 67 0 SHEET 2 E 2 GLY B 73 TRP B 74 -1 O TRP B 74 N GLY B 66 CISPEP 1 ASP A 92 VAL A 93 0 17.63 CISPEP 2 VAL A 93 PRO A 94 0 2.06 CISPEP 3 TRP A 128 PRO A 129 0 1.15 CISPEP 4 GLN A 148 PRO A 149 0 5.68 CISPEP 5 VAL B 95 GLN B 96 0 17.34 CISPEP 6 TRP B 128 PRO B 129 0 0.07 CISPEP 7 GLN B 148 PRO B 149 0 7.73 SITE 1 AC1 29 SER A 38 THR A 39 ASN A 40 GLN A 63 SITE 2 AC1 29 GLY A 66 ARG A 67 GLY A 68 ARG A 69 SITE 3 AC1 29 ARG A 72 GLY A 73 TRP A 74 ALA A 75 SITE 4 AC1 29 GLN A 81 ILE A 83 LEU A 84 ASN A 130 SITE 5 AC1 29 LYS A 138 GLY A 141 ILE A 142 LEU A 143 SITE 6 AC1 29 VAL A 155 GLY A 156 ASN A 158 VAL A 166 SITE 7 AC1 29 ASP A 167 ALA A 170 HOH A 441 HOH A 580 SITE 8 AC1 29 HOH A 586 SITE 1 AC2 29 SER B 38 THR B 39 ASN B 40 GLN B 63 SITE 2 AC2 29 GLY B 66 ARG B 67 GLY B 68 ARG B 69 SITE 3 AC2 29 ARG B 72 GLY B 73 TRP B 74 ALA B 75 SITE 4 AC2 29 GLN B 81 ILE B 83 LEU B 84 ASN B 130 SITE 5 AC2 29 LYS B 138 GLY B 141 ILE B 142 VAL B 155 SITE 6 AC2 29 GLY B 156 ASN B 158 VAL B 166 ASP B 167 SITE 7 AC2 29 ALA B 170 SO4 B 302 HOH B 404 HOH B 484 SITE 8 AC2 29 HOH B 504 SITE 1 AC3 5 ARG B 72 GLY B 73 BT5 B 301 HOH B 545 SITE 2 AC3 5 HOH B 575 CRYST1 41.737 75.406 77.599 90.00 97.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023960 0.000000 0.003333 0.00000 SCALE2 0.000000 0.013262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013011 0.00000