PDB Short entry for 4P0P HEADER HYDROLASE/DNA 22-FEB-14 4P0P TITLE CRYSTAL STRUCTURE OF HUMAN MUS81-EME1 IN COMPLEX WITH 5'-FLAP DNA, AND TITLE 2 MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: CROSSOVER JUNCTION ENDONUCLEASE MUS81; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.22.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CROSSOVER JUNCTION ENDONUCLEASE EME1; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: MMS4 HOMOLOG,HMMS4; COMPND 10 EC: 3.1.22.-; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA GAATGTGTGTCTCAATC; COMPND 14 CHAIN: E; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA GGATTG; COMPND 18 CHAIN: F; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: DNA TAACCAGACACACATT; COMPND 22 CHAIN: G; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MUS81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: EME1, MMS4; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630; SOURCE 21 MOL_ID: 4; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 24 ORGANISM_TAXID: 32630; SOURCE 25 MOL_ID: 5; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630 KEYWDS RESOLVASE, HYDROASE-DNA COMPLEX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.H.GWON,K.BAEK,Y.CHO REVDAT 3 27-DEC-23 4P0P 1 SOURCE JRNL REMARK REVDAT 2 14-JAN-15 4P0P 1 DBREF REVDAT 1 28-MAY-14 4P0P 0 JRNL AUTH G.H.GWON,A.JO,K.BAEK,K.S.JIN,Y.FU,J.B.LEE,Y.KIM,Y.CHO JRNL TITL CRYSTAL STRUCTURES OF THE STRUCTURE-SELECTIVE NUCLEASE JRNL TITL 2 MUS81-EME1 BOUND TO FLAP DNA SUBSTRATES. JRNL REF EMBO J. V. 33 1061 2014 JRNL REFN ESSN 1460-2075 JRNL PMID 24733841 JRNL DOI 10.1002/EMBJ.201487820 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 25004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0299 - 5.8148 0.90 2633 132 0.2150 0.2372 REMARK 3 2 5.8148 - 4.6194 0.96 2668 144 0.2292 0.2393 REMARK 3 3 4.6194 - 4.0367 0.97 2626 139 0.2004 0.2132 REMARK 3 4 4.0367 - 3.6681 0.98 2661 150 0.2105 0.2290 REMARK 3 5 3.6681 - 3.4055 0.98 2616 164 0.2213 0.2781 REMARK 3 6 3.4055 - 3.2049 0.98 2662 123 0.2478 0.2294 REMARK 3 7 3.2049 - 3.0445 0.98 2633 135 0.2416 0.3023 REMARK 3 8 3.0445 - 2.9121 0.98 2614 131 0.2679 0.2964 REMARK 3 9 2.9121 - 2.8000 0.98 2627 146 0.2668 0.2949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5252 REMARK 3 ANGLE : 0.666 7237 REMARK 3 CHIRALITY : 0.038 833 REMARK 3 PLANARITY : 0.008 817 REMARK 3 DIHEDRAL : 18.509 2023 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, ETHANOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.51150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 113.24950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.51150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 113.24950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 246 REMARK 465 ALA A 247 REMARK 465 GLU A 248 REMARK 465 LEU A 249 REMARK 465 ALA A 250 REMARK 465 SER A 251 REMARK 465 GLU A 252 REMARK 465 ALA A 253 REMARK 465 GLY A 254 REMARK 465 VAL A 255 REMARK 465 GLY A 281 REMARK 465 GLY A 282 REMARK 465 HIS A 283 REMARK 465 ARG A 284 REMARK 465 ASN A 438 REMARK 465 PRO A 439 REMARK 465 GLU A 440 REMARK 465 SER A 441 REMARK 465 GLY A 442 REMARK 465 ALA A 443 REMARK 465 MET A 444 REMARK 465 THR A 445 REMARK 465 SER A 446 REMARK 465 GLY B 178 REMARK 465 GLN B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 SER B 182 REMARK 465 LEU B 183 REMARK 465 ALA B 184 REMARK 465 VAL B 185 REMARK 465 THR B 186 REMARK 465 LYS B 187 REMARK 465 THR B 188 REMARK 465 ASN B 189 REMARK 465 SER B 190 REMARK 465 ASP B 191 REMARK 465 ILE B 192 REMARK 465 LEU B 193 REMARK 465 PRO B 194 REMARK 465 PRO B 195 REMARK 465 GLN B 196 REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 465 THR B 199 REMARK 465 LYS B 200 REMARK 465 PRO B 201 REMARK 465 SER B 202 REMARK 465 GLN B 203 REMARK 465 LYS B 204 REMARK 465 VAL B 205 REMARK 465 GLN B 206 REMARK 465 GLY B 207 REMARK 465 ARG B 208 REMARK 465 GLY B 209 REMARK 465 SER B 210 REMARK 465 HIS B 211 REMARK 465 GLY B 212 REMARK 465 CYS B 213 REMARK 465 ARG B 214 REMARK 465 GLN B 215 REMARK 465 GLN B 216 REMARK 465 ARG B 217 REMARK 465 GLN B 218 REMARK 465 ALA B 219 REMARK 465 ARG B 220 REMARK 465 GLN B 221 REMARK 465 LYS B 222 REMARK 465 GLU B 223 REMARK 465 SER B 224 REMARK 465 THR B 225 REMARK 465 LEU B 226 REMARK 465 ARG B 227 REMARK 465 ARG B 228 REMARK 465 GLN B 229 REMARK 465 GLU B 230 REMARK 465 ARG B 231 REMARK 465 LYS B 232 REMARK 465 ASN B 233 REMARK 465 ALA B 234 REMARK 465 ALA B 235 REMARK 465 LEU B 236 REMARK 465 VAL B 237 REMARK 465 THR B 238 REMARK 465 GLN B 330 REMARK 465 GLY B 331 REMARK 465 SER B 332 REMARK 465 LEU B 333 REMARK 465 ASP B 334 REMARK 465 SER B 335 REMARK 465 THR B 336 REMARK 465 MET B 337 REMARK 465 LYS B 338 REMARK 465 GLY B 339 REMARK 465 LYS B 340 REMARK 465 GLU B 341 REMARK 465 SER B 371 REMARK 465 ALA B 372 REMARK 465 GLN B 373 REMARK 465 ASN B 374 REMARK 465 PRO B 375 REMARK 465 PRO B 376 REMARK 465 ARG B 377 REMARK 465 ARG B 378 REMARK 465 GLY B 379 REMARK 465 LYS B 380 REMARK 465 GLN B 381 REMARK 465 GLY B 382 REMARK 465 ALA B 383 REMARK 465 ASN B 384 REMARK 465 LYS B 385 REMARK 465 GLN B 386 REMARK 465 THR B 387 REMARK 465 LYS B 388 REMARK 465 LYS B 389 REMARK 465 GLN B 390 REMARK 465 GLN B 391 REMARK 465 GLN B 392 REMARK 465 ARG B 393 REMARK 465 GLN B 394 REMARK 465 PRO B 395 REMARK 465 GLU B 396 REMARK 465 ALA B 397 REMARK 465 SER B 398 REMARK 465 ILE B 399 REMARK 465 GLY B 400 REMARK 465 SER B 401 REMARK 465 MET B 402 REMARK 465 GLY B 535 REMARK 465 GLU B 536 REMARK 465 GLY B 537 REMARK 465 VAL B 538 REMARK 465 THR B 539 REMARK 465 SER B 540 REMARK 465 ASP B 567 REMARK 465 SER B 568 REMARK 465 ALA B 569 REMARK 465 ASP B 570 REMARK 465 DG E 1 REMARK 465 DT G 23 REMARK 465 DA G 24 REMARK 465 DA G 25 REMARK 465 DC G 26 REMARK 465 DC G 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 533 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C7 DT G 38 O HOH G 103 1.70 REMARK 500 O THR B 342 O HOH B 618 1.74 REMARK 500 N GLY B 345 O HOH B 618 1.88 REMARK 500 OP2 DT E 6 O HOH E 103 1.90 REMARK 500 C THR B 342 O HOH B 618 2.00 REMARK 500 O PRO A 317 O HOH A 701 2.09 REMARK 500 O GLY A 360 O HOH A 721 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC E 13 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA G 34 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA G 36 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 259 109.84 -34.00 REMARK 500 GLU A 370 78.29 64.76 REMARK 500 ASN A 376 50.89 -97.49 REMARK 500 PRO A 432 -104.76 -63.18 REMARK 500 MET A 480 38.15 -89.28 REMARK 500 PRO B 245 -54.64 -19.23 REMARK 500 ALA B 297 -61.59 -121.40 REMARK 500 PRO B 310 41.73 -77.71 REMARK 500 GLU B 367 -68.68 -154.48 REMARK 500 LYS B 368 -80.20 -76.21 REMARK 500 SER B 463 -126.94 54.69 REMARK 500 ALA B 474 -155.71 -82.90 REMARK 500 PRO B 505 16.40 -68.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 350 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 274 OD2 REMARK 620 2 GLU A 277 OE1 88.5 REMARK 620 3 ASP A 307 OD1 102.9 81.6 REMARK 620 4 HOH A 720 O 153.1 67.6 63.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P0Q RELATED DB: PDB REMARK 900 RELATED ID: 4P0R RELATED DB: PDB REMARK 900 RELATED ID: 4P0S RELATED DB: PDB DBREF 4P0P A 246 551 UNP Q96NY9 MUS81_HUMAN 246 551 DBREF 4P0P B 178 570 UNP Q96AY2 EME1_HUMAN 178 570 DBREF 4P0P E 1 17 PDB 4P0P 4P0P 1 17 DBREF 4P0P F 21 26 PDB 4P0P 4P0P 21 26 DBREF 4P0P G 23 38 PDB 4P0P 4P0P 23 38 SEQRES 1 A 306 SER ALA GLU LEU ALA SER GLU ALA GLY VAL GLN GLN GLN SEQRES 2 A 306 PRO LEU GLU LEU ARG PRO GLY GLU TYR ARG VAL LEU LEU SEQRES 3 A 306 CYS VAL ASP ILE GLY GLU THR ARG GLY GLY GLY HIS ARG SEQRES 4 A 306 PRO GLU LEU LEU ARG GLU LEU GLN ARG LEU HIS VAL THR SEQRES 5 A 306 HIS THR VAL ARG LYS LEU HIS VAL GLY ASP PHE VAL TRP SEQRES 6 A 306 VAL ALA GLN GLU THR ASN PRO ARG ASP PRO ALA ASN PRO SEQRES 7 A 306 GLY GLU LEU VAL LEU ASP HIS ILE VAL GLU ARG LYS ARG SEQRES 8 A 306 LEU ASP ASP LEU CYS SER SER ILE ILE ASP GLY ARG PHE SEQRES 9 A 306 ARG GLU GLN LYS PHE ARG LEU LYS ARG CYS GLY LEU GLU SEQRES 10 A 306 ARG ARG VAL TYR LEU VAL GLU GLU HIS GLY SER VAL HIS SEQRES 11 A 306 ASN LEU SER LEU PRO GLU SER THR LEU LEU GLN ALA VAL SEQRES 12 A 306 THR ASN THR GLN VAL ILE ASP GLY PHE PHE VAL LYS ARG SEQRES 13 A 306 THR ALA ASP ILE LYS GLU SER ALA ALA TYR LEU ALA LEU SEQRES 14 A 306 LEU THR ARG GLY LEU GLN ARG LEU TYR GLN GLY HIS THR SEQRES 15 A 306 LEU ARG SER ARG PRO TRP GLY THR PRO GLY ASN PRO GLU SEQRES 16 A 306 SER GLY ALA MET THR SER PRO ASN PRO LEU CYS SER LEU SEQRES 17 A 306 LEU THR PHE SER ASP PHE ASN ALA GLY ALA ILE LYS ASN SEQRES 18 A 306 LYS ALA GLN SER VAL ARG GLU VAL PHE ALA ARG GLN LEU SEQRES 19 A 306 MET GLN VAL ARG GLY VAL SER GLY GLU LYS ALA ALA ALA SEQRES 20 A 306 LEU VAL ASP ARG TYR SER THR PRO ALA SER LEU LEU ALA SEQRES 21 A 306 ALA TYR ASP ALA CYS ALA THR PRO LYS GLU GLN GLU THR SEQRES 22 A 306 LEU LEU SER THR ILE LYS CYS GLY ARG LEU GLN ARG ASN SEQRES 23 A 306 LEU GLY PRO ALA LEU SER ARG THR LEU SER GLN LEU TYR SEQRES 24 A 306 CYS SER TYR GLY PRO LEU THR SEQRES 1 B 393 GLY GLN SER SER SER LEU ALA VAL THR LYS THR ASN SER SEQRES 2 B 393 ASP ILE LEU PRO PRO GLN LYS LYS THR LYS PRO SER GLN SEQRES 3 B 393 LYS VAL GLN GLY ARG GLY SER HIS GLY CYS ARG GLN GLN SEQRES 4 B 393 ARG GLN ALA ARG GLN LYS GLU SER THR LEU ARG ARG GLN SEQRES 5 B 393 GLU ARG LYS ASN ALA ALA LEU VAL THR ARG MET LYS ALA SEQRES 6 B 393 GLN ARG PRO GLU GLU CYS LEU LYS HIS ILE ILE VAL VAL SEQRES 7 B 393 LEU ASP PRO VAL LEU LEU GLN MET GLU GLY GLY GLY GLN SEQRES 8 B 393 LEU LEU GLY ALA LEU GLN THR MET GLU CYS ARG CYS VAL SEQRES 9 B 393 ILE GLU ALA GLN ALA VAL PRO CYS SER VAL THR TRP ARG SEQRES 10 B 393 ARG ARG ALA GLY PRO SER GLU ASP ARG GLU ASP TRP VAL SEQRES 11 B 393 GLU GLU PRO THR VAL LEU VAL LEU LEU ARG ALA GLU ALA SEQRES 12 B 393 PHE VAL SER MET ILE ASP ASN GLY LYS GLN GLY SER LEU SEQRES 13 B 393 ASP SER THR MET LYS GLY LYS GLU THR LEU GLN GLY PHE SEQRES 14 B 393 VAL THR ASP ILE THR ALA LYS THR ALA GLY LYS ALA LEU SEQRES 15 B 393 SER LEU VAL ILE VAL ASP GLN GLU LYS CYS PHE SER ALA SEQRES 16 B 393 GLN ASN PRO PRO ARG ARG GLY LYS GLN GLY ALA ASN LYS SEQRES 17 B 393 GLN THR LYS LYS GLN GLN GLN ARG GLN PRO GLU ALA SER SEQRES 18 B 393 ILE GLY SER MET VAL SER ARG VAL ASP ALA GLU GLU ALA SEQRES 19 B 393 LEU VAL ASP LEU GLN LEU HIS THR GLU ALA GLN ALA GLN SEQRES 20 B 393 ILE VAL GLN SER TRP LYS GLU LEU ALA ASP PHE THR CYS SEQRES 21 B 393 ALA PHE THR LYS ALA VAL ALA GLU ALA PRO PHE LYS LYS SEQRES 22 B 393 LEU ARG ASP GLU THR THR PHE SER PHE CYS LEU GLU SER SEQRES 23 B 393 ASP TRP ALA GLY GLY VAL LYS VAL ASP LEU ALA GLY ARG SEQRES 24 B 393 GLY LEU ALA LEU VAL TRP ARG ARG GLN ILE GLN GLN LEU SEQRES 25 B 393 ASN ARG VAL SER LEU GLU MET ALA SER ALA VAL VAL ASN SEQRES 26 B 393 ALA TYR PRO SER PRO GLN LEU LEU VAL GLN ALA TYR GLN SEQRES 27 B 393 GLN CYS PHE SER ASP LYS GLU ARG GLN ASN LEU LEU ALA SEQRES 28 B 393 ASP ILE GLN VAL ARG ARG GLY GLU GLY VAL THR SER THR SEQRES 29 B 393 SER ARG ARG ILE GLY PRO GLU LEU SER ARG ARG ILE TYR SEQRES 30 B 393 LEU GLN MET THR THR LEU GLN PRO HIS LEU SER LEU ASP SEQRES 31 B 393 SER ALA ASP SEQRES 1 E 17 DG DA DA DT DG DT DG DT DG DT DC DT DC SEQRES 2 E 17 DA DA DT DC SEQRES 1 F 6 DG DG DA DT DT DG SEQRES 1 G 16 DT DA DA DC DC DA DG DA DC DA DC DA DC SEQRES 2 G 16 DA DT DT HET MG A 601 1 HETNAM MG MAGNESIUM ION FORMUL 6 MG MG 2+ FORMUL 7 HOH *47(H2 O) HELIX 1 AA1 GLU A 286 LEU A 294 1 9 HELIX 2 AA2 LEU A 337 ASP A 346 1 10 HELIX 3 AA3 GLY A 347 ARG A 358 1 12 HELIX 4 AA4 PRO A 380 ILE A 394 1 15 HELIX 5 AA5 ASP A 404 TYR A 423 1 20 HELIX 6 AA6 PHE A 456 ALA A 463 1 8 HELIX 7 AA7 SER A 470 MET A 480 1 11 HELIX 8 AA8 SER A 486 TYR A 497 1 12 HELIX 9 AA9 THR A 499 CYS A 510 1 12 HELIX 10 AB1 THR A 512 THR A 518 1 7 HELIX 11 AB2 PRO A 534 SER A 546 1 13 HELIX 12 AB3 GLU B 246 LYS B 250 5 5 HELIX 13 AB4 ASP B 257 GLN B 262 1 6 HELIX 14 AB5 GLY B 265 MET B 276 1 12 HELIX 15 AB6 ALA B 318 LYS B 329 1 12 HELIX 16 AB7 LEU B 343 ALA B 355 1 13 HELIX 17 AB8 SER B 404 THR B 419 1 16 HELIX 18 AB9 SER B 428 THR B 456 1 29 HELIX 19 AC1 SER B 458 GLU B 462 5 5 HELIX 20 AC2 GLY B 477 GLN B 488 1 12 HELIX 21 AC3 SER B 493 TYR B 504 1 12 HELIX 22 AC4 SER B 506 GLN B 516 1 11 HELIX 23 AC5 GLY B 546 THR B 559 1 14 SHEET 1 AA1 7 GLU A 261 LEU A 262 0 SHEET 2 AA1 7 LEU A 428 SER A 430 -1 O LEU A 428 N LEU A 262 SHEET 3 AA1 7 SER A 452 THR A 455 1 O LEU A 453 N ARG A 429 SHEET 4 AA1 7 GLU A 325 ARG A 336 -1 N VAL A 327 O LEU A 454 SHEET 5 AA1 7 PHE A 308 GLU A 314 -1 N ALA A 312 O LEU A 326 SHEET 6 AA1 7 TYR A 267 ASP A 274 -1 N CYS A 272 O VAL A 309 SHEET 7 AA1 7 HIS A 298 ARG A 301 1 O THR A 299 N VAL A 273 SHEET 1 AA2 6 GLU A 261 LEU A 262 0 SHEET 2 AA2 6 LEU A 428 SER A 430 -1 O LEU A 428 N LEU A 262 SHEET 3 AA2 6 SER A 452 THR A 455 1 O LEU A 453 N ARG A 429 SHEET 4 AA2 6 GLU A 325 ARG A 336 -1 N VAL A 327 O LEU A 454 SHEET 5 AA2 6 ARG A 363 GLU A 369 1 O LEU A 367 N LYS A 335 SHEET 6 AA2 6 PHE A 398 ARG A 401 1 O PHE A 398 N TYR A 366 SHEET 1 AA3 2 LYS A 524 CYS A 525 0 SHEET 2 AA3 2 ARG A 530 ASN A 531 -1 O ARG A 530 N CYS A 525 SHEET 1 AA4 4 ARG B 279 ILE B 282 0 SHEET 2 AA4 4 ILE B 252 LEU B 256 1 N LEU B 256 O VAL B 281 SHEET 3 AA4 4 SER B 290 ARG B 295 -1 O THR B 292 N VAL B 255 SHEET 4 AA4 4 VAL B 307 GLU B 308 -1 O VAL B 307 N ARG B 295 SHEET 1 AA5 6 ARG B 279 ILE B 282 0 SHEET 2 AA5 6 ILE B 252 LEU B 256 1 N LEU B 256 O VAL B 281 SHEET 3 AA5 6 SER B 290 ARG B 295 -1 O THR B 292 N VAL B 255 SHEET 4 AA5 6 THR B 311 ARG B 317 -1 O LEU B 313 N VAL B 291 SHEET 5 AA5 6 ALA B 358 VAL B 364 1 O VAL B 362 N LEU B 316 SHEET 6 AA5 6 GLN B 422 VAL B 426 1 O GLN B 422 N LEU B 361 LINK OD2 ASP A 274 MG MG A 601 1555 1555 2.29 LINK OE1 GLU A 277 MG MG A 601 1555 1555 2.25 LINK OD1 ASP A 307 MG MG A 601 1555 1555 2.20 LINK MG MG A 601 O HOH A 720 1555 1555 2.48 CISPEP 1 ASN A 448 PRO A 449 0 -4.24 CISPEP 2 LEU A 528 GLN A 529 0 -1.29 SITE 1 AC1 4 ASP A 274 GLU A 277 ASP A 307 HOH A 720 CRYST1 85.023 226.499 52.457 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011762 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019063 0.00000