PDB Short entry for 4P3F HEADER RNA BINDING PROTEIN 19-FEB-14 4P3F TITLE STRUCTURE OF THE HUMAN SRP68-RBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL RECOGNITION PARTICLE SUBUNIT SRP68; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 47-254; COMPND 5 SYNONYM: SRP68, SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SRP68; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SRPSRP68RNA-BINDING DOMAIN (RBD), TETRATRICOPEPTIDE REPEAT (TPR), RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.T.GROTWINKEL,K.WILD,I.SINNING REVDAT 4 27-SEP-23 4P3F 1 REMARK REVDAT 3 08-JAN-20 4P3F 1 REMARK REVDAT 2 27-SEP-17 4P3F 1 SOURCE JRNL REMARK REVDAT 1 16-APR-14 4P3F 0 JRNL AUTH J.T.GROTWINKEL,K.WILD,B.SEGNITZ,I.SINNING JRNL TITL SRP RNA REMODELING BY SRP68 EXPLAINS ITS ROLE IN PROTEIN JRNL TITL 2 TRANSLOCATION. JRNL REF SCIENCE V. 344 101 2014 JRNL REFN ESSN 1095-9203 JRNL PMID 24700861 JRNL DOI 10.1126/SCIENCE.1249094 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 42901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6842 - 4.1882 0.99 2773 146 0.1684 0.2028 REMARK 3 2 4.1882 - 3.3251 0.99 2747 144 0.1511 0.1682 REMARK 3 3 3.3251 - 2.9050 1.00 2734 144 0.1705 0.2112 REMARK 3 4 2.9050 - 2.6395 1.00 2753 145 0.1744 0.2120 REMARK 3 5 2.6395 - 2.4503 0.98 2691 142 0.1779 0.2196 REMARK 3 6 2.4503 - 2.3059 1.00 2717 143 0.1721 0.2371 REMARK 3 7 2.3059 - 2.1904 1.00 2742 144 0.1800 0.2500 REMARK 3 8 2.1904 - 2.0951 1.00 2723 144 0.1755 0.2273 REMARK 3 9 2.0951 - 2.0145 0.99 2710 142 0.1869 0.2716 REMARK 3 10 2.0145 - 1.9449 0.99 2741 144 0.1992 0.2637 REMARK 3 11 1.9449 - 1.8841 1.00 2669 141 0.1974 0.2421 REMARK 3 12 1.8841 - 1.8303 1.00 2772 146 0.2015 0.2645 REMARK 3 13 1.8303 - 1.7821 1.00 2736 144 0.2153 0.2589 REMARK 3 14 1.7821 - 1.7386 1.00 2722 143 0.2213 0.2900 REMARK 3 15 1.7386 - 1.6991 0.93 2526 133 0.2458 0.2788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3421 REMARK 3 ANGLE : 1.226 4577 REMARK 3 CHIRALITY : 0.090 478 REMARK 3 PLANARITY : 0.005 589 REMARK 3 DIHEDRAL : 15.516 1352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4429 -23.5238 -18.0485 REMARK 3 T TENSOR REMARK 3 T11: 0.0794 T22: 0.1388 REMARK 3 T33: 0.1402 T12: 0.0354 REMARK 3 T13: 0.0050 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.7034 L22: 0.3680 REMARK 3 L33: 6.3348 L12: 0.5029 REMARK 3 L13: 3.2387 L23: 0.9511 REMARK 3 S TENSOR REMARK 3 S11: 0.1567 S12: -0.0417 S13: -0.3711 REMARK 3 S21: -0.0812 S22: 0.0161 S23: -0.0219 REMARK 3 S31: 0.2597 S32: 0.2349 S33: -0.1441 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6398 -28.9921 -8.7660 REMARK 3 T TENSOR REMARK 3 T11: 0.1052 T22: 0.0994 REMARK 3 T33: 0.1378 T12: -0.0059 REMARK 3 T13: -0.0006 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.7659 L22: 4.6944 REMARK 3 L33: 6.1083 L12: -1.3772 REMARK 3 L13: 1.4076 L23: -4.1794 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: -0.0185 S13: -0.0317 REMARK 3 S21: 0.2091 S22: -0.0820 S23: -0.1132 REMARK 3 S31: 0.0864 S32: 0.0508 S33: 0.1400 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5647 -17.5057 -12.7885 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.1280 REMARK 3 T33: 0.0899 T12: 0.0036 REMARK 3 T13: 0.0065 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 3.1319 L22: 6.4053 REMARK 3 L33: 4.6422 L12: -0.9837 REMARK 3 L13: 1.4738 L23: -2.7642 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: 0.0115 S13: 0.0942 REMARK 3 S21: 0.1095 S22: 0.0087 S23: 0.1581 REMARK 3 S31: -0.1815 S32: -0.0296 S33: 0.0249 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0048 -11.3324 -8.0070 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.1163 REMARK 3 T33: 0.0959 T12: -0.0501 REMARK 3 T13: 0.0088 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 6.3963 L22: 8.0048 REMARK 3 L33: 4.1708 L12: -4.9929 REMARK 3 L13: 2.7058 L23: -3.2762 REMARK 3 S TENSOR REMARK 3 S11: -0.2219 S12: -0.2727 S13: 0.1277 REMARK 3 S21: 0.6083 S22: 0.1043 S23: -0.0246 REMARK 3 S31: -0.3754 S32: -0.0305 S33: 0.1013 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5029 -8.5316 -17.6704 REMARK 3 T TENSOR REMARK 3 T11: 0.0704 T22: 0.1251 REMARK 3 T33: 0.1019 T12: -0.0353 REMARK 3 T13: -0.0215 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 2.2969 L22: 2.7698 REMARK 3 L33: 1.3482 L12: -0.9206 REMARK 3 L13: -0.3535 L23: -0.5146 REMARK 3 S TENSOR REMARK 3 S11: 0.0920 S12: 0.0307 S13: -0.0116 REMARK 3 S21: -0.0329 S22: -0.0812 S23: -0.1619 REMARK 3 S31: -0.0983 S32: 0.1539 S33: -0.0125 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1057 -42.8848 -8.6757 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.0945 REMARK 3 T33: 0.1074 T12: 0.0110 REMARK 3 T13: 0.0097 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 6.4755 L22: 3.9566 REMARK 3 L33: 4.0109 L12: 0.3022 REMARK 3 L13: -0.7616 L23: -0.2588 REMARK 3 S TENSOR REMARK 3 S11: 0.1422 S12: -0.3653 S13: 0.0567 REMARK 3 S21: 0.5454 S22: 0.0294 S23: 0.0908 REMARK 3 S31: -0.2075 S32: -0.0149 S33: -0.1181 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9058 -33.9543 -24.8963 REMARK 3 T TENSOR REMARK 3 T11: 0.2283 T22: 0.1663 REMARK 3 T33: 0.1536 T12: 0.0592 REMARK 3 T13: 0.0227 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 3.9087 L22: 7.1392 REMARK 3 L33: 4.9131 L12: 3.9165 REMARK 3 L13: -3.2917 L23: -4.1802 REMARK 3 S TENSOR REMARK 3 S11: -0.1458 S12: -0.0149 S13: 0.0730 REMARK 3 S21: -0.2783 S22: 0.1021 S23: -0.1809 REMARK 3 S31: -0.2223 S32: 0.0027 S33: 0.0395 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8447 -47.6694 -18.8171 REMARK 3 T TENSOR REMARK 3 T11: 0.1092 T22: 0.1064 REMARK 3 T33: 0.0980 T12: 0.0473 REMARK 3 T13: 0.0066 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 6.6049 L22: 6.7725 REMARK 3 L33: 3.8366 L12: 4.3902 REMARK 3 L13: -2.1894 L23: -1.8008 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: -0.0172 S13: 0.1212 REMARK 3 S21: -0.0268 S22: 0.0174 S23: 0.2318 REMARK 3 S31: 0.1141 S32: -0.2562 S33: 0.0166 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 141 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6889 -53.9998 -21.3154 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.0997 REMARK 3 T33: 0.0879 T12: 0.0405 REMARK 3 T13: 0.0186 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 7.9880 L22: 8.1480 REMARK 3 L33: 2.5480 L12: 7.0649 REMARK 3 L13: 0.0510 L23: -0.0575 REMARK 3 S TENSOR REMARK 3 S11: -0.1416 S12: -0.0735 S13: -0.1436 REMARK 3 S21: -0.1702 S22: 0.0278 S23: -0.0999 REMARK 3 S31: 0.3585 S32: -0.0299 S33: 0.1028 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1667 -57.1130 -9.9699 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.1757 REMARK 3 T33: 0.1028 T12: 0.0824 REMARK 3 T13: 0.0281 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 3.2363 L22: 3.9653 REMARK 3 L33: 2.2319 L12: 1.5572 REMARK 3 L13: 0.4919 L23: -0.6660 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.2572 S13: -0.1074 REMARK 3 S21: 0.1675 S22: -0.1247 S23: -0.2605 REMARK 3 S31: 0.4305 S32: 0.2225 S33: 0.1188 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 219 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9283 -57.6962 -1.0596 REMARK 3 T TENSOR REMARK 3 T11: 0.2878 T22: 0.2521 REMARK 3 T33: 0.0854 T12: -0.0398 REMARK 3 T13: 0.0120 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 3.4508 L22: 8.1822 REMARK 3 L33: 1.5113 L12: 1.9942 REMARK 3 L13: -0.4639 L23: -2.0339 REMARK 3 S TENSOR REMARK 3 S11: 0.3168 S12: -0.4038 S13: 0.1509 REMARK 3 S21: 0.5712 S22: -0.4447 S23: 0.2926 REMARK 3 S31: 0.3814 S32: -0.0084 S33: 0.1232 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42912 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.699 REMARK 200 RESOLUTION RANGE LOW (A) : 48.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : 0.02000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 4P3G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: K/NA TARTRATE, PEG5000MME, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.65500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 31 REMARK 465 GLY A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 GLY A 39 REMARK 465 SER A 40 REMARK 465 LYS A 41 REMARK 465 ALA A 42 REMARK 465 ASN A 43 REMARK 465 LYS A 44 REMARK 465 GLU A 45 REMARK 465 PHE A 46 REMARK 465 GLY A 47 REMARK 465 ASN A 138 REMARK 465 THR A 139 REMARK 465 GLU A 140 REMARK 465 PRO A 141 REMARK 465 ASP A 245 REMARK 465 GLN A 246 REMARK 465 MET B 31 REMARK 465 GLY B 32 REMARK 465 HIS B 33 REMARK 465 HIS B 34 REMARK 465 HIS B 35 REMARK 465 HIS B 36 REMARK 465 HIS B 37 REMARK 465 HIS B 38 REMARK 465 GLY B 39 REMARK 465 SER B 40 REMARK 465 LYS B 41 REMARK 465 ALA B 42 REMARK 465 ASN B 43 REMARK 465 LYS B 44 REMARK 465 GLU B 45 REMARK 465 PHE B 46 REMARK 465 ASP B 245 REMARK 465 GLN B 246 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 406 O HOH A 436 2.08 REMARK 500 OG1 THR B 218 OE1 GLN B 221 2.15 REMARK 500 O HOH B 432 O HOH B 435 2.17 REMARK 500 OD1 ASN A 168 O HOH A 401 2.18 REMARK 500 O HOH A 435 O HOH A 462 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 410 O HOH B 339 2554 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 74.93 -101.21 REMARK 500 GLU A 136 83.84 -69.59 REMARK 500 PHE A 217 -146.27 -116.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P3G RELATED DB: PDB REMARK 900 RELATED ID: 4P3E RELATED DB: PDB DBREF 4P3F A 39 246 UNP Q9UHB9 SRP68_HUMAN 47 254 DBREF 4P3F B 39 246 UNP Q9UHB9 SRP68_HUMAN 47 254 SEQADV 4P3F MET A 31 UNP Q9UHB9 INITIATING METHIONINE SEQADV 4P3F GLY A 32 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS A 33 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS A 34 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS A 35 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS A 36 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS A 37 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS A 38 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F ASP A 108 UNP Q9UHB9 GLU 116 ENGINEERED MUTATION SEQADV 4P3F MET B 31 UNP Q9UHB9 INITIATING METHIONINE SEQADV 4P3F GLY B 32 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS B 33 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS B 34 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS B 35 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS B 36 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS B 37 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F HIS B 38 UNP Q9UHB9 EXPRESSION TAG SEQADV 4P3F ASP B 108 UNP Q9UHB9 GLU 116 ENGINEERED MUTATION SEQRES 1 A 216 MET GLY HIS HIS HIS HIS HIS HIS GLY SER LYS ALA ASN SEQRES 2 A 216 LYS GLU PHE GLY ASP SER LEU SER LEU GLU ILE LEU GLN SEQRES 3 A 216 ILE ILE LYS GLU SER GLN GLN GLN HIS GLY LEU ARG HIS SEQRES 4 A 216 GLY ASP PHE GLN ARG TYR ARG GLY TYR CYS SER ARG ARG SEQRES 5 A 216 GLN ARG ARG LEU ARG LYS THR LEU ASN PHE LYS MET GLY SEQRES 6 A 216 ASN ARG HIS LYS PHE THR GLY LYS LYS VAL THR GLU ASP SEQRES 7 A 216 LEU LEU THR ASP ASN ARG TYR LEU LEU LEU VAL LEU MET SEQRES 8 A 216 ASP ALA GLU ARG ALA TRP SER TYR ALA MET GLN LEU LYS SEQRES 9 A 216 GLN GLU ALA ASN THR GLU PRO ARG LYS ARG PHE HIS LEU SEQRES 10 A 216 LEU SER ARG LEU ARG LYS ALA VAL LYS HIS ALA GLU GLU SEQRES 11 A 216 LEU GLU ARG LEU CYS GLU SER ASN ARG VAL ASP ALA LYS SEQRES 12 A 216 THR LYS LEU GLU ALA GLN ALA TYR THR ALA TYR LEU SER SEQRES 13 A 216 GLY MET LEU ARG PHE GLU HIS GLN GLU TRP LYS ALA ALA SEQRES 14 A 216 ILE GLU ALA PHE ASN LYS CYS LYS THR ILE TYR GLU LYS SEQRES 15 A 216 LEU ALA SER ALA PHE THR GLU GLU GLN ALA VAL LEU TYR SEQRES 16 A 216 ASN GLN ARG VAL GLU GLU ILE SER PRO ASN ILE ARG TYR SEQRES 17 A 216 CYS ALA TYR ASN ILE GLY ASP GLN SEQRES 1 B 216 MET GLY HIS HIS HIS HIS HIS HIS GLY SER LYS ALA ASN SEQRES 2 B 216 LYS GLU PHE GLY ASP SER LEU SER LEU GLU ILE LEU GLN SEQRES 3 B 216 ILE ILE LYS GLU SER GLN GLN GLN HIS GLY LEU ARG HIS SEQRES 4 B 216 GLY ASP PHE GLN ARG TYR ARG GLY TYR CYS SER ARG ARG SEQRES 5 B 216 GLN ARG ARG LEU ARG LYS THR LEU ASN PHE LYS MET GLY SEQRES 6 B 216 ASN ARG HIS LYS PHE THR GLY LYS LYS VAL THR GLU ASP SEQRES 7 B 216 LEU LEU THR ASP ASN ARG TYR LEU LEU LEU VAL LEU MET SEQRES 8 B 216 ASP ALA GLU ARG ALA TRP SER TYR ALA MET GLN LEU LYS SEQRES 9 B 216 GLN GLU ALA ASN THR GLU PRO ARG LYS ARG PHE HIS LEU SEQRES 10 B 216 LEU SER ARG LEU ARG LYS ALA VAL LYS HIS ALA GLU GLU SEQRES 11 B 216 LEU GLU ARG LEU CYS GLU SER ASN ARG VAL ASP ALA LYS SEQRES 12 B 216 THR LYS LEU GLU ALA GLN ALA TYR THR ALA TYR LEU SER SEQRES 13 B 216 GLY MET LEU ARG PHE GLU HIS GLN GLU TRP LYS ALA ALA SEQRES 14 B 216 ILE GLU ALA PHE ASN LYS CYS LYS THR ILE TYR GLU LYS SEQRES 15 B 216 LEU ALA SER ALA PHE THR GLU GLU GLN ALA VAL LEU TYR SEQRES 16 B 216 ASN GLN ARG VAL GLU GLU ILE SER PRO ASN ILE ARG TYR SEQRES 17 B 216 CYS ALA TYR ASN ILE GLY ASP GLN HET PEG A 301 7 HET PEG A 302 7 HET PEG A 303 7 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PEG 3(C4 H10 O3) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 10 HOH *367(H2 O) HELIX 1 AA1 GLU A 53 HIS A 65 1 13 HELIX 2 AA2 GLY A 66 GLY A 70 5 5 HELIX 3 AA3 ASP A 71 ASN A 96 1 26 HELIX 4 AA4 ASN A 113 GLU A 136 1 24 HELIX 5 AA5 LYS A 143 CYS A 165 1 23 HELIX 6 AA6 ASP A 171 HIS A 193 1 23 HELIX 7 AA7 GLU A 195 SER A 215 1 21 HELIX 8 AA8 THR A 218 GLY A 244 1 27 HELIX 9 AA9 GLU B 53 HIS B 65 1 13 HELIX 10 AB1 GLY B 66 GLY B 70 5 5 HELIX 11 AB2 ASP B 71 ASN B 96 1 26 HELIX 12 AB3 ASN B 113 ASN B 138 1 26 HELIX 13 AB4 GLU B 140 ARG B 142 5 3 HELIX 14 AB5 LYS B 143 GLU B 166 1 24 HELIX 15 AB6 ASP B 171 HIS B 193 1 23 HELIX 16 AB7 GLU B 195 ALA B 216 1 22 HELIX 17 AB8 THR B 218 TYR B 241 1 24 SITE 1 AC1 4 PHE A 191 PEG A 302 EDO A 304 HOH A 406 SITE 1 AC2 7 LYS A 134 ALA A 137 LEU A 147 GLU A 192 SITE 2 AC2 7 PEG A 301 EDO A 306 HOH A 554 SITE 1 AC3 3 EDO A 307 HOH A 406 HOH A 436 SITE 1 AC4 3 TYR A 238 PEG A 301 HOH A 406 SITE 1 AC5 3 EDO A 307 HOH A 404 HOH A 459 SITE 1 AC6 2 PEG A 302 HOH A 459 SITE 1 AC7 2 PEG A 303 EDO A 305 CRYST1 37.810 93.310 60.100 90.00 109.34 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026448 0.000000 0.009283 0.00000 SCALE2 0.000000 0.010717 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017634 0.00000