PDB Short entry for 4P6E HEADER HYDROLASE/HYDROLASE INHIBITOR 24-MAR-14 4P6E TITLE CRYSTAL STRUCTURE OF HUMAN CATHEPSIN S BOUND TO A NON-COVALENT TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN S; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.22.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSS; SOURCE 6 EXPRESSION_SYSTEM: ENTEROBACTERIA PHAGE L1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 268588 KEYWDS CYSTEINE PROTEASE, CATHEPSIN S, INHIBITOR, NON-COVALENT, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,P.K.JADHAV,G.G.DENG REVDAT 2 27-DEC-23 4P6E 1 SOURCE KEYWDS REMARK REVDAT 1 29-OCT-14 4P6E 0 JRNL AUTH P.K.JADHAV,M.A.SCHIFFLER,K.GAVARDINAS,E.J.KIM,D.P.MATTHEWS, JRNL AUTH 2 M.A.STASZAK,D.S.COFFEY,B.W.SHAW,K.C.CASSIDY,R.A.BRIER, JRNL AUTH 3 Y.ZHANG,R.M.CHRISTIE,W.F.MATTER,K.QING,J.D.DURBIN,Y.WANG, JRNL AUTH 4 G.G.DENG JRNL TITL DISCOVERY OF CATHEPSIN S INHIBITOR LY3000328 FOR THE JRNL TITL 2 TREATMENT OF ABDOMINAL AORTIC ANEURYSM. JRNL REF ACS MED.CHEM.LETT. V. 5 1138 2014 JRNL REFN ISSN 1948-5875 JRNL PMID 25313327 JRNL DOI 10.1021/ML500283G REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 50867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3695 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3381 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 417 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3586 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3168 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4867 ; 1.227 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7321 ; 0.980 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 5.358 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;35.446 ;24.573 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 563 ;11.621 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.182 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 493 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4186 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 840 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1758 ; 1.435 ; 2.706 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1757 ; 1.428 ; 2.705 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2196 ; 2.020 ; 4.048 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2197 ; 2.019 ; 4.050 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1828 ; 2.190 ; 2.974 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1761 ; 2.209 ; 2.975 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2573 ; 3.404 ; 4.354 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4522 ; 5.263 ;23.579 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4266 ; 4.870 ;22.769 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 218 B 0 218 12525 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4P6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 8000, 150 MM AMMONIUM SULFATE, REMARK 280 100 MM SODIUM ACETATE, PH 4.6, EVAPORATION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.74800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.87400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 113.62200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.74800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.62200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.87400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 85.69200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -37.87400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 453 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 434 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 446 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -5 REMARK 465 ASN A -4 REMARK 465 PRO A -3 REMARK 465 ASN A -2 REMARK 465 ARG A -1 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 SER B -5 REMARK 465 ASN B -4 REMARK 465 PRO B -3 REMARK 465 ASN B -2 REMARK 465 ARG B -1 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 98 CD CE NZ REMARK 470 GLU A 218 CD OE1 OE2 REMARK 470 LYS B 93 CE NZ REMARK 470 ARG B 141 CD NE CZ NH1 NH2 REMARK 470 ARG B 149 NE CZ NH1 NH2 REMARK 470 LYS B 177 CE NZ REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 506 O HOH A 573 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 448 O HOH A 448 5555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 30.25 -88.39 REMARK 500 THR A 58 -126.90 -113.82 REMARK 500 LYS A 202 54.62 -118.66 REMARK 500 THR B 58 -126.52 -114.55 REMARK 500 ARG B 141 36.03 -88.83 REMARK 500 LYS B 202 52.02 -117.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2FC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2FC B 301 DBREF 4P6E A -5 217 UNP P25774 CATS_HUMAN 109 331 DBREF 4P6E B -5 217 UNP P25774 CATS_HUMAN 109 331 SEQADV 4P6E GLU A 218 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS A 219 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS A 220 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS A 221 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS A 222 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS A 223 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS A 224 UNP P25774 EXPRESSION TAG SEQADV 4P6E GLU B 218 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS B 219 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS B 220 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS B 221 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS B 222 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS B 223 UNP P25774 EXPRESSION TAG SEQADV 4P6E HIS B 224 UNP P25774 EXPRESSION TAG SEQRES 1 A 230 SER ASN PRO ASN ARG ILE LEU PRO ASP SER VAL ASP TRP SEQRES 2 A 230 ARG GLU LYS GLY CYS VAL THR GLU VAL LYS TYR GLN GLY SEQRES 3 A 230 SER CYS GLY ALA CYS TRP ALA PHE SER ALA VAL GLY ALA SEQRES 4 A 230 LEU GLU ALA GLN LEU LYS LEU LYS THR GLY LYS LEU VAL SEQRES 5 A 230 SER LEU SER ALA GLN ASN LEU VAL ASP CYS SER THR GLU SEQRES 6 A 230 LYS TYR GLY ASN LYS GLY CYS ASN GLY GLY PHE MET THR SEQRES 7 A 230 THR ALA PHE GLN TYR ILE ILE ASP ASN LYS GLY ILE ASP SEQRES 8 A 230 SER ASP ALA SER TYR PRO TYR LYS ALA MET ASP GLN LYS SEQRES 9 A 230 CYS GLN TYR ASP SER LYS TYR ARG ALA ALA THR CYS SER SEQRES 10 A 230 LYS TYR THR GLU LEU PRO TYR GLY ARG GLU ASP VAL LEU SEQRES 11 A 230 LYS GLU ALA VAL ALA ASN LYS GLY PRO VAL SER VAL GLY SEQRES 12 A 230 VAL ASP ALA ARG HIS PRO SER PHE PHE LEU TYR ARG SER SEQRES 13 A 230 GLY VAL TYR TYR GLU PRO SER CYS THR GLN ASN VAL ASN SEQRES 14 A 230 HIS GLY VAL LEU VAL VAL GLY TYR GLY ASP LEU ASN GLY SEQRES 15 A 230 LYS GLU TYR TRP LEU VAL LYS ASN SER TRP GLY HIS ASN SEQRES 16 A 230 PHE GLY GLU GLU GLY TYR ILE ARG MET ALA ARG ASN LYS SEQRES 17 A 230 GLY ASN HIS CYS GLY ILE ALA SER PHE PRO SER TYR PRO SEQRES 18 A 230 GLU ILE GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 230 SER ASN PRO ASN ARG ILE LEU PRO ASP SER VAL ASP TRP SEQRES 2 B 230 ARG GLU LYS GLY CYS VAL THR GLU VAL LYS TYR GLN GLY SEQRES 3 B 230 SER CYS GLY ALA CYS TRP ALA PHE SER ALA VAL GLY ALA SEQRES 4 B 230 LEU GLU ALA GLN LEU LYS LEU LYS THR GLY LYS LEU VAL SEQRES 5 B 230 SER LEU SER ALA GLN ASN LEU VAL ASP CYS SER THR GLU SEQRES 6 B 230 LYS TYR GLY ASN LYS GLY CYS ASN GLY GLY PHE MET THR SEQRES 7 B 230 THR ALA PHE GLN TYR ILE ILE ASP ASN LYS GLY ILE ASP SEQRES 8 B 230 SER ASP ALA SER TYR PRO TYR LYS ALA MET ASP GLN LYS SEQRES 9 B 230 CYS GLN TYR ASP SER LYS TYR ARG ALA ALA THR CYS SER SEQRES 10 B 230 LYS TYR THR GLU LEU PRO TYR GLY ARG GLU ASP VAL LEU SEQRES 11 B 230 LYS GLU ALA VAL ALA ASN LYS GLY PRO VAL SER VAL GLY SEQRES 12 B 230 VAL ASP ALA ARG HIS PRO SER PHE PHE LEU TYR ARG SER SEQRES 13 B 230 GLY VAL TYR TYR GLU PRO SER CYS THR GLN ASN VAL ASN SEQRES 14 B 230 HIS GLY VAL LEU VAL VAL GLY TYR GLY ASP LEU ASN GLY SEQRES 15 B 230 LYS GLU TYR TRP LEU VAL LYS ASN SER TRP GLY HIS ASN SEQRES 16 B 230 PHE GLY GLU GLU GLY TYR ILE ARG MET ALA ARG ASN LYS SEQRES 17 B 230 GLY ASN HIS CYS GLY ILE ALA SER PHE PRO SER TYR PRO SEQRES 18 B 230 GLU ILE GLU HIS HIS HIS HIS HIS HIS HET SO4 A 301 5 HET 2FC A 302 29 HET 2FC B 301 29 HETNAM SO4 SULFATE ION HETNAM 2FC N-[(8R)-8-(BENZOYLAMINO)-5,6,7,8-TETRAHYDRONAPHTHALEN- HETNAM 2 2FC 2-YL]-4-METHYLPIPERAZINE-1-CARBOXAMIDE FORMUL 3 SO4 O4 S 2- FORMUL 4 2FC 2(C23 H28 N4 O2) FORMUL 6 HOH *417(H2 O) HELIX 1 AA1 ARG A 8 GLY A 11 5 4 HELIX 2 AA2 ALA A 24 GLY A 43 1 20 HELIX 3 AA3 SER A 49 SER A 57 1 9 HELIX 4 AA4 THR A 58 GLY A 62 5 5 HELIX 5 AA5 LYS A 64 GLY A 68 5 5 HELIX 6 AA6 PHE A 70 LYS A 82 1 13 HELIX 7 AA7 ASP A 102 LYS A 104 5 3 HELIX 8 AA8 ARG A 120 LYS A 131 1 12 HELIX 9 AA9 HIS A 142 LEU A 147 1 6 HELIX 10 AB1 ASN A 204 ILE A 208 5 5 HELIX 11 AB2 ARG B 8 GLY B 11 5 4 HELIX 12 AB3 ALA B 24 GLY B 43 1 20 HELIX 13 AB4 SER B 49 SER B 57 1 9 HELIX 14 AB5 THR B 58 GLY B 62 5 5 HELIX 15 AB6 LYS B 64 GLY B 68 5 5 HELIX 16 AB7 PHE B 70 LYS B 82 1 13 HELIX 17 AB8 ASP B 102 LYS B 104 5 3 HELIX 18 AB9 ARG B 120 LYS B 131 1 12 HELIX 19 AC1 HIS B 142 LEU B 147 1 6 HELIX 20 AC2 ASN B 204 ILE B 208 5 5 SHEET 1 AA1 3 VAL A 5 ASP A 6 0 SHEET 2 AA1 3 HIS A 164 LEU A 174 -1 O TYR A 171 N VAL A 5 SHEET 3 AA1 3 VAL A 134 VAL A 138 -1 N VAL A 134 O VAL A 168 SHEET 1 AA2 4 VAL A 5 ASP A 6 0 SHEET 2 AA2 4 HIS A 164 LEU A 174 -1 O TYR A 171 N VAL A 5 SHEET 3 AA2 4 LYS A 177 LYS A 183 -1 O LYS A 183 N LEU A 167 SHEET 4 AA2 4 TYR A 195 ALA A 199 -1 O ILE A 196 N VAL A 182 SHEET 1 AA3 2 ILE A 84 ASP A 85 0 SHEET 2 AA3 2 ARG A 106 ALA A 108 -1 O ALA A 107 N ILE A 84 SHEET 1 AA4 2 LYS A 112 GLU A 115 0 SHEET 2 AA4 2 SER A 213 GLU A 216 -1 O GLU A 216 N LYS A 112 SHEET 1 AA5 3 VAL B 5 ASP B 6 0 SHEET 2 AA5 3 HIS B 164 LEU B 174 -1 O TYR B 171 N VAL B 5 SHEET 3 AA5 3 VAL B 134 VAL B 138 -1 N VAL B 134 O VAL B 168 SHEET 1 AA6 5 VAL B 5 ASP B 6 0 SHEET 2 AA6 5 HIS B 164 LEU B 174 -1 O TYR B 171 N VAL B 5 SHEET 3 AA6 5 LYS B 177 LYS B 183 -1 O LYS B 183 N LEU B 167 SHEET 4 AA6 5 TYR B 195 ALA B 199 -1 O ILE B 196 N VAL B 182 SHEET 5 AA6 5 VAL B 152 TYR B 153 1 N TYR B 153 O ARG B 197 SHEET 1 AA7 2 ILE B 84 ASP B 85 0 SHEET 2 AA7 2 ARG B 106 ALA B 108 -1 O ALA B 107 N ILE B 84 SHEET 1 AA8 2 LYS B 112 GLU B 115 0 SHEET 2 AA8 2 SER B 213 GLU B 216 -1 O TYR B 214 N THR B 114 SSBOND 1 CYS A 22 CYS A 66 1555 1555 2.06 SSBOND 2 CYS A 56 CYS A 99 1555 1555 2.11 SSBOND 3 CYS A 158 CYS A 206 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 66 1555 1555 2.06 SSBOND 5 CYS B 56 CYS B 99 1555 1555 2.12 SSBOND 6 CYS B 158 CYS B 206 1555 1555 2.04 SITE 1 AC1 5 TYR A 18 GLY A 20 SER A 21 HOH A 530 SITE 2 AC1 5 LYS B 10 SITE 1 AC2 14 GLY A 62 GLY A 68 GLY A 69 PHE A 70 SITE 2 AC2 14 MET A 71 ASN A 163 GLY A 165 PHE A 211 SITE 3 AC2 14 HOH A 469 HOH A 578 HOH A 593 PHE B 70 SITE 4 AC2 14 THR B 72 2FC B 301 SITE 1 AC3 16 PHE A 70 THR A 72 GLU A 115 2FC A 302 SITE 2 AC3 16 GLY B 62 ASN B 67 GLY B 68 GLY B 69 SITE 3 AC3 16 PHE B 70 MET B 71 GLU B 115 ASN B 163 SITE 4 AC3 16 GLY B 165 PHE B 211 HOH B 451 HOH B 592 CRYST1 85.692 85.692 151.496 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006601 0.00000