PDB Short entry for 4P8W HEADER SUGAR BINDING PROTEIN 01-APR-14 4P8W TITLE THE CRYSTAL STRUCTURES OF YKL-39 IN THE PRESENCE OF TITLE 2 CHITOOLIGOSACCHARIDES (GLCNAC4) WERE SOLVED TO RESOLUTIONS OF 1.9 TITLE 3 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE-3-LIKE PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHONDROCYTE PROTEIN 39,YKL-39; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CHI3L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A(+) KEYWDS CHITINASE 3-LIKE PROTEIN 2, HUMAN YKL-39, FAMILY-18 CHITINASE, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.SUGINTA,A.RANOK,R.C.ROBINSON,J.WONGSANTICHON REVDAT 5 27-DEC-23 4P8W 1 HETSYN LINK REVDAT 4 29-JUL-20 4P8W 1 COMPND SOURCE KEYWDS JRNL REVDAT 4 2 1 REMARK HETNAM LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 11-FEB-15 4P8W 1 JRNL REVDAT 2 17-DEC-14 4P8W 1 JRNL REVDAT 1 03-DEC-14 4P8W 0 JRNL AUTH A.RANOK,J.WONGSANTICHON,R.C.ROBINSON,W.SUGINTA JRNL TITL STRUCTURAL AND THERMODYNAMIC INSIGHTS INTO JRNL TITL 2 CHITOOLIGOSACCHARIDE BINDING TO HUMAN CARTILAGE CHITINASE JRNL TITL 3 3-LIKE PROTEIN 2 (CHI3L2 OR YKL-39). JRNL REF J.BIOL.CHEM. V. 290 2617 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25477513 JRNL DOI 10.1074/JBC.M114.588905 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 26230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 917 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2888 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 428 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.757 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3077 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2854 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4186 ; 1.372 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6586 ; 0.792 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 6.012 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;38.128 ;24.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;15.136 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.922 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3421 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 707 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1468 ; 1.446 ; 2.227 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1467 ; 1.445 ; 2.225 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1837 ; 2.215 ; 3.332 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1838 ; 2.215 ; 3.334 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1609 ; 2.012 ; 2.505 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1609 ; 2.010 ; 2.505 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2346 ; 3.331 ; 3.660 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3965 ; 5.576 ;19.732 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3737 ; 5.315 ;18.898 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4P8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 5.3-5.9 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26230 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 45.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.19400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, LITHIUM SULFATE, BIS TRIS, REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.26400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.67700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.67700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.13200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.67700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.67700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.39600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.67700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.67700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.13200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.67700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.67700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.39600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.26400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 ASP A 23 REMARK 465 ILE A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 182 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 146 O6 NDG B 1 1.45 REMARK 500 O HOH A 637 O HOH A 807 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 385 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 143 76.90 -114.91 REMARK 500 ASP A 148 -166.15 55.89 REMARK 500 SER A 228 68.11 -155.37 REMARK 500 SER A 277 -164.29 -127.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 832 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 865 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 887 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 890 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A 891 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A 905 DISTANCE = 6.21 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P8X RELATED DB: PDB REMARK 900 RELATED ID: 4P8W RELATED DB: PDB REMARK 900 RELATED ID: 4P8U RELATED DB: PDB DBREF 4P8W A 27 390 UNP Q15782 CH3L2_HUMAN 27 390 SEQADV 4P8W ALA A 20 UNP Q15782 EXPRESSION TAG SEQADV 4P8W MET A 21 UNP Q15782 EXPRESSION TAG SEQADV 4P8W ALA A 22 UNP Q15782 EXPRESSION TAG SEQADV 4P8W ASP A 23 UNP Q15782 EXPRESSION TAG SEQADV 4P8W ILE A 24 UNP Q15782 EXPRESSION TAG SEQADV 4P8W GLY A 25 UNP Q15782 EXPRESSION TAG SEQADV 4P8W SER A 26 UNP Q15782 EXPRESSION TAG SEQADV 4P8W VAL A 182 UNP Q15782 ALA 182 ENGINEERED MUTATION SEQADV 4P8W TRP A 318 UNP Q15782 ARG 318 ENGINEERED MUTATION SEQRES 1 A 371 ALA MET ALA ASP ILE GLY SER TYR LYS LEU VAL CYS TYR SEQRES 2 A 371 PHE THR ASN TRP SER GLN ASP ARG GLN GLU PRO GLY LYS SEQRES 3 A 371 PHE THR PRO GLU ASN ILE ASP PRO PHE LEU CYS SER HIS SEQRES 4 A 371 LEU ILE TYR SER PHE ALA SER ILE GLU ASN ASN LYS VAL SEQRES 5 A 371 ILE ILE LYS ASP LYS SER GLU VAL MET LEU TYR GLN THR SEQRES 6 A 371 ILE ASN SER LEU LYS THR LYS ASN PRO LYS LEU LYS ILE SEQRES 7 A 371 LEU LEU SER ILE GLY GLY TYR LEU PHE GLY SER LYS GLY SEQRES 8 A 371 PHE HIS PRO MET VAL ASP SER SER THR SER ARG LEU GLU SEQRES 9 A 371 PHE ILE ASN SER ILE ILE LEU PHE LEU ARG ASN HIS ASN SEQRES 10 A 371 PHE ASP GLY LEU ASP VAL SER TRP ILE TYR PRO ASP GLN SEQRES 11 A 371 LYS GLU ASN THR HIS PHE THR VAL LEU ILE HIS GLU LEU SEQRES 12 A 371 ALA GLU ALA PHE GLN LYS ASP PHE THR LYS SER THR LYS SEQRES 13 A 371 GLU ARG LEU LEU LEU THR VAL GLY VAL SER ALA GLY ARG SEQRES 14 A 371 GLN MET ILE ASP ASN SER TYR GLN VAL GLU LYS LEU ALA SEQRES 15 A 371 LYS ASP LEU ASP PHE ILE ASN LEU LEU SER PHE ASP PHE SEQRES 16 A 371 HIS GLY SER TRP GLU LYS PRO LEU ILE THR GLY HIS ASN SEQRES 17 A 371 SER PRO LEU SER LYS GLY TRP GLN ASP ARG GLY PRO SER SEQRES 18 A 371 SER TYR TYR ASN VAL GLU TYR ALA VAL GLY TYR TRP ILE SEQRES 19 A 371 HIS LYS GLY MET PRO SER GLU LYS VAL VAL MET GLY ILE SEQRES 20 A 371 PRO THR TYR GLY HIS SER PHE THR LEU ALA SER ALA GLU SEQRES 21 A 371 THR THR VAL GLY ALA PRO ALA SER GLY PRO GLY ALA ALA SEQRES 22 A 371 GLY PRO ILE THR GLU SER SER GLY PHE LEU ALA TYR TYR SEQRES 23 A 371 GLU ILE CYS GLN PHE LEU LYS GLY ALA LYS ILE THR TRP SEQRES 24 A 371 LEU GLN ASP GLN GLN VAL PRO TYR ALA VAL LYS GLY ASN SEQRES 25 A 371 GLN TRP VAL GLY TYR ASP ASP VAL LYS SER MET GLU THR SEQRES 26 A 371 LYS VAL GLN PHE LEU LYS ASN LEU ASN LEU GLY GLY ALA SEQRES 27 A 371 MET ILE TRP SER ILE ASP MET ASP ASP PHE THR GLY LYS SEQRES 28 A 371 SER CYS ASN GLN GLY PRO TYR PRO LEU VAL GLN ALA VAL SEQRES 29 A 371 LYS ARG SER LEU GLY SER LEU MODRES 4P8W NAG B 2 NAG -D MODRES 4P8W NAG B 3 NAG -D MODRES 4P8W NAG B 4 NAG -D HET NDG B 1 15 HET NAG B 2 14 HET NAG B 3 14 HET NAG B 4 14 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NDG C8 H15 N O6 FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *428(H2 O) HELIX 1 AA1 TRP A 36 ARG A 40 5 5 HELIX 2 AA2 THR A 47 ILE A 51 5 5 HELIX 3 AA3 SER A 77 ASN A 92 1 16 HELIX 4 AA4 SER A 108 HIS A 112 5 5 HELIX 5 AA5 PRO A 113 ASP A 116 5 4 HELIX 6 AA6 SER A 117 HIS A 135 1 19 HELIX 7 AA7 PRO A 147 SER A 173 1 27 HELIX 8 AA8 GLY A 187 TYR A 195 1 9 HELIX 9 AA9 GLN A 196 LEU A 204 1 9 HELIX 10 AB1 ARG A 237 TYR A 243 5 7 HELIX 11 AB2 ASN A 244 LYS A 255 1 12 HELIX 12 AB3 PRO A 258 GLU A 260 5 3 HELIX 13 AB4 TYR A 304 LEU A 311 1 8 HELIX 14 AB5 ASP A 338 LEU A 352 1 15 HELIX 15 AB6 SER A 361 ASP A 365 5 5 HELIX 16 AB7 TYR A 377 SER A 389 1 13 SHEET 1 AA110 LYS A 70 ILE A 72 0 SHEET 2 AA110 HIS A 58 GLU A 67 -1 N SER A 65 O ILE A 72 SHEET 3 AA110 LYS A 96 GLY A 103 1 O SER A 100 N ALA A 64 SHEET 4 AA110 GLY A 139 TRP A 144 1 O SER A 143 N ILE A 101 SHEET 5 AA110 LEU A 179 SER A 185 1 O THR A 181 N VAL A 142 SHEET 6 AA110 PHE A 206 LEU A 210 1 O ASN A 208 N VAL A 182 SHEET 7 AA110 VAL A 262 PRO A 267 1 O VAL A 263 N LEU A 209 SHEET 8 AA110 GLY A 356 TRP A 360 1 O MET A 358 N MET A 264 SHEET 9 AA110 LYS A 28 THR A 34 1 N VAL A 30 O ALA A 357 SHEET 10 AA110 HIS A 58 GLU A 67 1 O HIS A 58 N CYS A 31 SHEET 1 AA2 3 ALA A 286 PRO A 289 0 SHEET 2 AA2 3 TYR A 269 LEU A 275 -1 N THR A 274 O GLY A 288 SHEET 3 AA2 3 PHE A 301 ALA A 303 -1 O LEU A 302 N GLY A 270 SHEET 1 AA3 5 ALA A 286 PRO A 289 0 SHEET 2 AA3 5 TYR A 269 LEU A 275 -1 N THR A 274 O GLY A 288 SHEET 3 AA3 5 GLN A 332 GLY A 335 -1 O TRP A 333 N PHE A 273 SHEET 4 AA3 5 VAL A 324 LYS A 329 -1 N ALA A 327 O VAL A 334 SHEET 5 AA3 5 LYS A 315 LEU A 319 -1 N THR A 317 O TYR A 326 SSBOND 1 CYS A 31 CYS A 56 1555 1555 2.00 SSBOND 2 CYS A 308 CYS A 372 1555 1555 2.04 LINK O4 NDG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 NAG B 3 1555 1555 1.42 LINK O4 NAG B 3 C1 NAG B 4 1555 1555 1.44 CISPEP 1 GLU A 42 PRO A 43 0 2.83 CISPEP 2 SER A 62 PHE A 63 0 -8.64 CISPEP 3 HIS A 112 PRO A 113 0 9.20 CISPEP 4 ILE A 145 TYR A 146 0 -12.49 CISPEP 5 LYS A 220 PRO A 221 0 1.65 CISPEP 6 TRP A 360 SER A 361 0 -5.69 CRYST1 71.354 71.354 140.528 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007116 0.00000