PDB Short entry for 4PBY HEADER CELL CYCLE 14-APR-14 4PBY TITLE STRUCTURE OF THE HUMAN RBAP48-MTA1(656-686) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-BINDING PROTEIN RBBP4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT C,CAF-1 SUBUNIT C, COMPND 5 CHROMATIN ASSEMBLY FACTOR I P48 SUBUNIT,CAF-I P48,NUCLEOSOME- COMPND 6 REMODELING FACTOR SUBUNIT RBAP48,RETINOBLASTOMA-BINDING PROTEIN 4, COMPND 7 RBBP-4,RETINOBLASTOMA-BINDING PROTEIN P48; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: METASTASIS-ASSOCIATED PROTEIN MTA1; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: RESIDUES 639-669; COMPND 13 SYNONYM: MTA1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBBP4, RBAP48; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFBDM; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS RBAP48, MTA1, NURD, SUB-COMPLEX, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR A.MURTHY,S.LEJON,S.S.M.ALQARNI,A.P.G.SILVA,A.A.WATSON,J.P.MACKAY, AUTHOR 2 E.D.LAUE REVDAT 4 17-DEC-14 4PBY 1 REMARK REVDAT 3 20-AUG-14 4PBY 1 JRNL REVDAT 2 25-JUN-14 4PBY 1 JRNL REVDAT 1 11-JUN-14 4PBY 0 JRNL AUTH S.S.ALQARNI,A.MURTHY,W.ZHANG,M.R.PRZEWLOKA,A.P.SILVA, JRNL AUTH 2 A.A.WATSON,S.LEJON,X.Y.PEI,A.H.SMITS,S.L.KLOET,H.WANG, JRNL AUTH 3 N.E.SHEPHERD,P.H.STOKES,G.A.BLOBEL,M.VERMEULEN,D.M.GLOVER, JRNL AUTH 4 J.P.MACKAY,E.D.LAUE JRNL TITL INSIGHT INTO THE ARCHITECTURE OF THE NURD COMPLEX: STRUCTURE JRNL TITL 2 OF THE RBAP48-MTA1 SUB-COMPLEX. JRNL REF J.BIOL.CHEM. V. 289 21844 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24920672 JRNL DOI 10.1074/JBC.M114.558940 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : 0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.481 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.318 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6691 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6116 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9115 ; 1.489 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14158 ; 2.378 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 815 ; 6.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 332 ;34.472 ;25.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1103 ;15.153 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.288 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 986 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7602 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1528 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3251 ; 1.921 ; 2.480 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3250 ; 1.921 ; 2.480 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4057 ; 3.308 ; 3.706 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4PBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9809 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35120 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 52.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: RBAP48 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 20000, 20% V/V PEGMME 550, REMARK 280 0.2 M 1,6-HEXANEDIOL, 0.2 M 1-BUTANOL, 0.2 M (RS)-1,2- REMARK 280 PROPANEDIOL, 0.2 M 2-PROPANOL, 0.2 M 1,4-BUTANEDIOL, 0.2 M 1,3- REMARK 280 PROPANEDIOL, AND 0.1 M MES/IMIDAZOLE PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.74000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 89 REMARK 465 ASP A 90 REMARK 465 ALA A 91 REMARK 465 GLN A 92 REMARK 465 PHE A 93 REMARK 465 ASP A 94 REMARK 465 ALA A 95 REMARK 465 SER A 96 REMARK 465 HIS A 97 REMARK 465 TYR A 98 REMARK 465 ASP A 99 REMARK 465 SER A 100 REMARK 465 GLU A 101 REMARK 465 LYS A 102 REMARK 465 GLY A 103 REMARK 465 GLU A 104 REMARK 465 PHE A 105 REMARK 465 GLY A 106 REMARK 465 GLY A 107 REMARK 465 PHE A 108 REMARK 465 GLY A 109 REMARK 465 SER A 110 REMARK 465 VAL A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 PRO A 414 REMARK 465 GLU A 415 REMARK 465 GLY A 416 REMARK 465 SER A 417 REMARK 465 VAL A 418 REMARK 465 ASP A 419 REMARK 465 PRO A 420 REMARK 465 GLU A 421 REMARK 465 GLY A 422 REMARK 465 GLN A 423 REMARK 465 GLY A 424 REMARK 465 SER A 425 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 ASP B 411 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 PRO B 414 REMARK 465 GLU B 415 REMARK 465 GLY B 416 REMARK 465 SER B 417 REMARK 465 VAL B 418 REMARK 465 ASP B 419 REMARK 465 PRO B 420 REMARK 465 GLU B 421 REMARK 465 GLY B 422 REMARK 465 GLN B 423 REMARK 465 GLY B 424 REMARK 465 SER B 425 REMARK 465 ASP C 656 REMARK 465 VAL C 657 REMARK 465 PHE C 658 REMARK 465 TYR C 659 REMARK 465 MET C 660 REMARK 465 ALA C 661 REMARK 465 THR C 662 REMARK 465 GLU C 663 REMARK 465 GLU C 664 REMARK 465 THR C 665 REMARK 465 ARG C 666 REMARK 465 LYS C 667 REMARK 465 ILE C 668 REMARK 465 ARG C 669 REMARK 465 LYS C 670 REMARK 465 LEU C 671 REMARK 465 LEU C 672 REMARK 465 SER C 673 REMARK 465 SER C 674 REMARK 465 ASP D 656 REMARK 465 VAL D 657 REMARK 465 PHE D 658 REMARK 465 TYR D 659 REMARK 465 MET D 660 REMARK 465 ALA D 661 REMARK 465 THR D 662 REMARK 465 GLU D 663 REMARK 465 GLU D 664 REMARK 465 THR D 665 REMARK 465 ARG D 666 REMARK 465 LYS D 667 REMARK 465 ILE D 668 REMARK 465 ARG D 669 REMARK 465 LYS D 670 REMARK 465 LEU D 671 REMARK 465 LEU D 672 REMARK 465 SER D 673 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 534 O HOH B 583 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 91.05 -160.11 REMARK 500 ASN A 168 70.73 -114.98 REMARK 500 TYR A 181 -55.77 -120.94 REMARK 500 HIS A 200 14.84 80.47 REMARK 500 PRO A 211 139.49 -37.77 REMARK 500 LYS A 296 10.80 81.52 REMARK 500 SER A 315 -39.32 172.67 REMARK 500 ARG A 340 -0.25 77.36 REMARK 500 TRP A 388 -4.31 77.25 REMARK 500 ASN A 397 -1.20 103.67 REMARK 500 ASN A 410 -154.37 -121.92 REMARK 500 ASP B 74 -50.05 -130.50 REMARK 500 ASP B 99 24.29 48.92 REMARK 500 GLU B 124 99.67 -65.78 REMARK 500 ASN B 136 79.70 -163.25 REMARK 500 PRO B 137 -0.93 -54.92 REMARK 500 HIS B 200 0.52 85.35 REMARK 500 ALA B 209 64.85 -115.33 REMARK 500 LYS B 215 -37.88 -132.75 REMARK 500 VAL B 229 118.01 -37.03 REMARK 500 ALA B 274 -159.82 -157.00 REMARK 500 LYS B 296 4.30 86.16 REMARK 500 ASN B 305 84.65 -151.93 REMARK 500 SER B 315 -36.48 176.96 REMARK 500 GLU B 353 126.09 -36.58 REMARK 500 TRP B 388 -0.60 69.28 REMARK 500 ASN B 397 -20.32 98.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 501 DBREF 4PBY A 1 425 UNP Q09028 RBBP4_HUMAN 1 425 DBREF 4PBY B 1 425 UNP Q09028 RBBP4_HUMAN 1 425 DBREF 4PBY C 656 686 UNP Q13330 MTA1_HUMAN 639 669 DBREF 4PBY D 656 686 UNP Q13330 MTA1_HUMAN 639 669 SEQRES 1 A 425 MET ALA ASP LYS GLU ALA ALA PHE ASP ASP ALA VAL GLU SEQRES 2 A 425 GLU ARG VAL ILE ASN GLU GLU TYR LYS ILE TRP LYS LYS SEQRES 3 A 425 ASN THR PRO PHE LEU TYR ASP LEU VAL MET THR HIS ALA SEQRES 4 A 425 LEU GLU TRP PRO SER LEU THR ALA GLN TRP LEU PRO ASP SEQRES 5 A 425 VAL THR ARG PRO GLU GLY LYS ASP PHE SER ILE HIS ARG SEQRES 6 A 425 LEU VAL LEU GLY THR HIS THR SER ASP GLU GLN ASN HIS SEQRES 7 A 425 LEU VAL ILE ALA SER VAL GLN LEU PRO ASN ASP ASP ALA SEQRES 8 A 425 GLN PHE ASP ALA SER HIS TYR ASP SER GLU LYS GLY GLU SEQRES 9 A 425 PHE GLY GLY PHE GLY SER VAL SER GLY LYS ILE GLU ILE SEQRES 10 A 425 GLU ILE LYS ILE ASN HIS GLU GLY GLU VAL ASN ARG ALA SEQRES 11 A 425 ARG TYR MET PRO GLN ASN PRO CYS ILE ILE ALA THR LYS SEQRES 12 A 425 THR PRO SER SER ASP VAL LEU VAL PHE ASP TYR THR LYS SEQRES 13 A 425 HIS PRO SER LYS PRO ASP PRO SER GLY GLU CYS ASN PRO SEQRES 14 A 425 ASP LEU ARG LEU ARG GLY HIS GLN LYS GLU GLY TYR GLY SEQRES 15 A 425 LEU SER TRP ASN PRO ASN LEU SER GLY HIS LEU LEU SER SEQRES 16 A 425 ALA SER ASP ASP HIS THR ILE CYS LEU TRP ASP ILE SER SEQRES 17 A 425 ALA VAL PRO LYS GLU GLY LYS VAL VAL ASP ALA LYS THR SEQRES 18 A 425 ILE PHE THR GLY HIS THR ALA VAL VAL GLU ASP VAL SER SEQRES 19 A 425 TRP HIS LEU LEU HIS GLU SER LEU PHE GLY SER VAL ALA SEQRES 20 A 425 ASP ASP GLN LYS LEU MET ILE TRP ASP THR ARG SER ASN SEQRES 21 A 425 ASN THR SER LYS PRO SER HIS SER VAL ASP ALA HIS THR SEQRES 22 A 425 ALA GLU VAL ASN CYS LEU SER PHE ASN PRO TYR SER GLU SEQRES 23 A 425 PHE ILE LEU ALA THR GLY SER ALA ASP LYS THR VAL ALA SEQRES 24 A 425 LEU TRP ASP LEU ARG ASN LEU LYS LEU LYS LEU HIS SER SEQRES 25 A 425 PHE GLU SER HIS LYS ASP GLU ILE PHE GLN VAL GLN TRP SEQRES 26 A 425 SER PRO HIS ASN GLU THR ILE LEU ALA SER SER GLY THR SEQRES 27 A 425 ASP ARG ARG LEU ASN VAL TRP ASP LEU SER LYS ILE GLY SEQRES 28 A 425 GLU GLU GLN SER PRO GLU ASP ALA GLU ASP GLY PRO PRO SEQRES 29 A 425 GLU LEU LEU PHE ILE HIS GLY GLY HIS THR ALA LYS ILE SEQRES 30 A 425 SER ASP PHE SER TRP ASN PRO ASN GLU PRO TRP VAL ILE SEQRES 31 A 425 CYS SER VAL SER GLU ASP ASN ILE MET GLN VAL TRP GLN SEQRES 32 A 425 MET ALA GLU ASN ILE TYR ASN ASP GLU ASP PRO GLU GLY SEQRES 33 A 425 SER VAL ASP PRO GLU GLY GLN GLY SER SEQRES 1 B 425 MET ALA ASP LYS GLU ALA ALA PHE ASP ASP ALA VAL GLU SEQRES 2 B 425 GLU ARG VAL ILE ASN GLU GLU TYR LYS ILE TRP LYS LYS SEQRES 3 B 425 ASN THR PRO PHE LEU TYR ASP LEU VAL MET THR HIS ALA SEQRES 4 B 425 LEU GLU TRP PRO SER LEU THR ALA GLN TRP LEU PRO ASP SEQRES 5 B 425 VAL THR ARG PRO GLU GLY LYS ASP PHE SER ILE HIS ARG SEQRES 6 B 425 LEU VAL LEU GLY THR HIS THR SER ASP GLU GLN ASN HIS SEQRES 7 B 425 LEU VAL ILE ALA SER VAL GLN LEU PRO ASN ASP ASP ALA SEQRES 8 B 425 GLN PHE ASP ALA SER HIS TYR ASP SER GLU LYS GLY GLU SEQRES 9 B 425 PHE GLY GLY PHE GLY SER VAL SER GLY LYS ILE GLU ILE SEQRES 10 B 425 GLU ILE LYS ILE ASN HIS GLU GLY GLU VAL ASN ARG ALA SEQRES 11 B 425 ARG TYR MET PRO GLN ASN PRO CYS ILE ILE ALA THR LYS SEQRES 12 B 425 THR PRO SER SER ASP VAL LEU VAL PHE ASP TYR THR LYS SEQRES 13 B 425 HIS PRO SER LYS PRO ASP PRO SER GLY GLU CYS ASN PRO SEQRES 14 B 425 ASP LEU ARG LEU ARG GLY HIS GLN LYS GLU GLY TYR GLY SEQRES 15 B 425 LEU SER TRP ASN PRO ASN LEU SER GLY HIS LEU LEU SER SEQRES 16 B 425 ALA SER ASP ASP HIS THR ILE CYS LEU TRP ASP ILE SER SEQRES 17 B 425 ALA VAL PRO LYS GLU GLY LYS VAL VAL ASP ALA LYS THR SEQRES 18 B 425 ILE PHE THR GLY HIS THR ALA VAL VAL GLU ASP VAL SER SEQRES 19 B 425 TRP HIS LEU LEU HIS GLU SER LEU PHE GLY SER VAL ALA SEQRES 20 B 425 ASP ASP GLN LYS LEU MET ILE TRP ASP THR ARG SER ASN SEQRES 21 B 425 ASN THR SER LYS PRO SER HIS SER VAL ASP ALA HIS THR SEQRES 22 B 425 ALA GLU VAL ASN CYS LEU SER PHE ASN PRO TYR SER GLU SEQRES 23 B 425 PHE ILE LEU ALA THR GLY SER ALA ASP LYS THR VAL ALA SEQRES 24 B 425 LEU TRP ASP LEU ARG ASN LEU LYS LEU LYS LEU HIS SER SEQRES 25 B 425 PHE GLU SER HIS LYS ASP GLU ILE PHE GLN VAL GLN TRP SEQRES 26 B 425 SER PRO HIS ASN GLU THR ILE LEU ALA SER SER GLY THR SEQRES 27 B 425 ASP ARG ARG LEU ASN VAL TRP ASP LEU SER LYS ILE GLY SEQRES 28 B 425 GLU GLU GLN SER PRO GLU ASP ALA GLU ASP GLY PRO PRO SEQRES 29 B 425 GLU LEU LEU PHE ILE HIS GLY GLY HIS THR ALA LYS ILE SEQRES 30 B 425 SER ASP PHE SER TRP ASN PRO ASN GLU PRO TRP VAL ILE SEQRES 31 B 425 CYS SER VAL SER GLU ASP ASN ILE MET GLN VAL TRP GLN SEQRES 32 B 425 MET ALA GLU ASN ILE TYR ASN ASP GLU ASP PRO GLU GLY SEQRES 33 B 425 SER VAL ASP PRO GLU GLY GLN GLY SER SEQRES 1 C 31 ASP VAL PHE TYR MET ALA THR GLU GLU THR ARG LYS ILE SEQRES 2 C 31 ARG LYS LEU LEU SER SER SER GLU THR LYS ARG ALA ALA SEQRES 3 C 31 ARG ARG PRO TYR LYS SEQRES 1 D 31 ASP VAL PHE TYR MET ALA THR GLU GLU THR ARG LYS ILE SEQRES 2 D 31 ARG LYS LEU LEU SER SER SER GLU THR LYS ARG ALA ALA SEQRES 3 D 31 ARG ARG PRO TYR LYS HET IPA A 501 4 HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 5 IPA C3 H8 O FORMUL 6 HOH *251(H2 O) HELIX 1 AA1 LYS A 4 LEU A 31 1 28 HELIX 2 AA2 THR A 155 HIS A 157 5 3 HELIX 3 AA3 SER A 348 ILE A 350 5 3 HELIX 4 AA4 SER A 355 GLY A 362 1 8 HELIX 5 AA5 ALA A 405 ASN A 410 1 6 HELIX 6 AA6 ASP B 9 LEU B 31 1 23 HELIX 7 AA7 ASP B 94 ASP B 99 5 6 HELIX 8 AA8 THR B 155 HIS B 157 5 3 HELIX 9 AA9 ARG B 304 LEU B 306 5 3 HELIX 10 AB1 SER B 348 ILE B 350 5 3 HELIX 11 AB2 SER B 355 GLU B 360 1 6 HELIX 12 AB3 GLU B 406 TYR B 409 5 4 HELIX 13 AB4 GLU C 676 ARG C 682 1 7 HELIX 14 AB5 SER D 675 ARG D 682 1 8 SHEET 1 AA1 4 TYR A 32 ALA A 39 0 SHEET 2 AA1 4 ILE A 398 MET A 404 -1 O VAL A 401 N MET A 36 SHEET 3 AA1 4 VAL A 389 SER A 394 -1 N SER A 392 O GLN A 400 SHEET 4 AA1 4 ILE A 377 TRP A 382 -1 N SER A 381 O CYS A 391 SHEET 1 AA2 4 ALA A 47 THR A 54 0 SHEET 2 AA2 4 PHE A 61 GLY A 69 -1 O VAL A 67 N GLN A 48 SHEET 3 AA2 4 ASN A 77 PRO A 87 -1 O VAL A 84 N HIS A 64 SHEET 4 AA2 4 ILE A 115 HIS A 123 -1 O ILE A 121 N LEU A 79 SHEET 1 AA3 5 ARG A 129 MET A 133 0 SHEET 2 AA3 5 ASN A 136 LYS A 143 -1 O ALA A 141 N ARG A 131 SHEET 3 AA3 5 VAL A 149 ASP A 153 -1 O PHE A 152 N ILE A 140 SHEET 4 AA3 5 LEU A 171 ARG A 174 -1 O LEU A 173 N VAL A 149 SHEET 5 AA3 5 VAL A 216 ASP A 218 1 O VAL A 217 N ARG A 174 SHEET 1 AA4 4 LEU A 183 TRP A 185 0 SHEET 2 AA4 4 HIS A 192 ALA A 196 -1 O LEU A 194 N SER A 184 SHEET 3 AA4 4 ILE A 202 ASP A 206 -1 O TRP A 205 N LEU A 193 SHEET 4 AA4 4 THR A 221 PHE A 223 -1 O PHE A 223 N ILE A 202 SHEET 1 AA5 4 VAL A 230 TRP A 235 0 SHEET 2 AA5 4 LEU A 242 ALA A 247 -1 O GLY A 244 N SER A 234 SHEET 3 AA5 4 LYS A 251 ASP A 256 -1 O MET A 253 N SER A 245 SHEET 4 AA5 4 HIS A 267 ASP A 270 -1 O VAL A 269 N LEU A 252 SHEET 1 AA6 4 VAL A 276 PHE A 281 0 SHEET 2 AA6 4 ILE A 288 SER A 293 -1 O ALA A 290 N SER A 280 SHEET 3 AA6 4 THR A 297 ASP A 302 -1 O TRP A 301 N LEU A 289 SHEET 4 AA6 4 HIS A 311 GLU A 314 -1 O PHE A 313 N VAL A 298 SHEET 1 AA7 4 ILE A 320 TRP A 325 0 SHEET 2 AA7 4 ILE A 332 GLY A 337 -1 O ALA A 334 N GLN A 324 SHEET 3 AA7 4 LEU A 342 ASP A 346 -1 O TRP A 345 N LEU A 333 SHEET 4 AA7 4 LEU A 366 HIS A 370 -1 O HIS A 370 N LEU A 342 SHEET 1 AA8 4 TYR B 32 ALA B 39 0 SHEET 2 AA8 4 ILE B 398 MET B 404 -1 O VAL B 401 N MET B 36 SHEET 3 AA8 4 VAL B 389 SER B 394 -1 N SER B 392 O GLN B 400 SHEET 4 AA8 4 ILE B 377 TRP B 382 -1 N SER B 381 O CYS B 391 SHEET 1 AA9 4 ALA B 47 THR B 54 0 SHEET 2 AA9 4 PHE B 61 GLY B 69 -1 O ARG B 65 N LEU B 50 SHEET 3 AA9 4 ASN B 77 PRO B 87 -1 O LEU B 86 N SER B 62 SHEET 4 AA9 4 ILE B 115 HIS B 123 -1 O GLU B 116 N SER B 83 SHEET 1 AB1 5 ARG B 129 MET B 133 0 SHEET 2 AB1 5 ASN B 136 LYS B 143 -1 O ALA B 141 N ARG B 131 SHEET 3 AB1 5 VAL B 149 ASP B 153 -1 O PHE B 152 N ILE B 140 SHEET 4 AB1 5 LEU B 171 ARG B 174 -1 O LEU B 173 N VAL B 149 SHEET 5 AB1 5 VAL B 216 ASP B 218 1 O VAL B 217 N ARG B 174 SHEET 1 AB2 4 LEU B 183 TRP B 185 0 SHEET 2 AB2 4 HIS B 192 ALA B 196 -1 O LEU B 194 N SER B 184 SHEET 3 AB2 4 ILE B 202 ASP B 206 -1 O TRP B 205 N LEU B 193 SHEET 4 AB2 4 THR B 221 PHE B 223 -1 O PHE B 223 N ILE B 202 SHEET 1 AB3 4 VAL B 230 TRP B 235 0 SHEET 2 AB3 4 LEU B 242 ALA B 247 -1 O GLY B 244 N SER B 234 SHEET 3 AB3 4 LYS B 251 ASP B 256 -1 O TRP B 255 N PHE B 243 SHEET 4 AB3 4 HIS B 267 ASP B 270 -1 O VAL B 269 N LEU B 252 SHEET 1 AB4 4 VAL B 276 PHE B 281 0 SHEET 2 AB4 4 ILE B 288 SER B 293 -1 O ALA B 290 N SER B 280 SHEET 3 AB4 4 THR B 297 ASP B 302 -1 O TRP B 301 N LEU B 289 SHEET 4 AB4 4 HIS B 311 GLU B 314 -1 O PHE B 313 N VAL B 298 SHEET 1 AB5 4 ILE B 320 TRP B 325 0 SHEET 2 AB5 4 ILE B 332 GLY B 337 -1 O ALA B 334 N GLN B 324 SHEET 3 AB5 4 LEU B 342 ASP B 346 -1 O TRP B 345 N LEU B 333 SHEET 4 AB5 4 LEU B 366 HIS B 370 -1 O PHE B 368 N VAL B 344 SITE 1 AC1 3 TYR A 181 GLU A 231 PHE A 321 CRYST1 81.560 59.480 104.630 90.00 90.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012261 0.000000 0.000026 0.00000 SCALE2 0.000000 0.016812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009558 0.00000