PDB Short entry for 4PBZ HEADER CELL CYCLE 14-APR-14 4PBZ TITLE STRUCTURE OF THE HUMAN RBAP48-MTA1(670-695) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-BINDING PROTEIN RBBP4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT C,CAF-1 SUBUNIT C, COMPND 5 CHROMATIN ASSEMBLY FACTOR I P48 SUBUNIT,CAF-I P48,NUCLEOSOME- COMPND 6 REMODELING FACTOR SUBUNIT RBAP48,RETINOBLASTOMA-BINDING PROTEIN 4, COMPND 7 RBBP-4,RETINOBLASTOMA-BINDING PROTEIN P48; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: METASTASIS-ASSOCIATED PROTEIN MTA1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RESIDUES 653-678; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBBP4, RBAP48; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFBDM; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS NURD, SUB-COMPLEX, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR A.MURTHY,X.Y.PEI,A.A.WATSON,A.P.G.SILVA,J.P.MACKAY,E.D.LAUE REVDAT 5 04-FEB-15 4PBZ 1 REMARK REVDAT 4 17-DEC-14 4PBZ 1 REMARK REVDAT 3 20-AUG-14 4PBZ 1 JRNL REVDAT 2 25-JUN-14 4PBZ 1 JRNL REVDAT 1 11-JUN-14 4PBZ 0 JRNL AUTH S.S.ALQARNI,A.MURTHY,W.ZHANG,M.R.PRZEWLOKA,A.P.SILVA, JRNL AUTH 2 A.A.WATSON,S.LEJON,X.Y.PEI,A.H.SMITS,S.L.KLOET,H.WANG, JRNL AUTH 3 N.E.SHEPHERD,P.H.STOKES,G.A.BLOBEL,M.VERMEULEN,D.M.GLOVER, JRNL AUTH 4 J.P.MACKAY,E.D.LAUE JRNL TITL INSIGHT INTO THE ARCHITECTURE OF THE NURD COMPLEX: STRUCTURE JRNL TITL 2 OF THE RBAP48-MTA1 SUB-COMPLEX. JRNL REF J.BIOL.CHEM. V. 289 21844 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24920672 JRNL DOI 10.1074/JBC.M114.558940 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 24747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1326 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1507 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3259 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.19000 REMARK 3 B22 (A**2) : -3.82000 REMARK 3 B33 (A**2) : -2.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.027 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3345 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3087 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4554 ; 1.494 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7143 ; 2.343 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 6.711 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;31.701 ;24.938 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;13.000 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.701 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3772 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 753 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1629 ; 4.508 ; 5.885 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1628 ; 4.502 ; 5.883 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2031 ; 6.825 ; 8.804 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 670 B 691 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1598 8.7673 9.3112 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: 0.2268 REMARK 3 T33: 0.1988 T12: -0.0209 REMARK 3 T13: -0.0503 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.7540 L22: 4.3591 REMARK 3 L33: 4.4622 L12: 0.0916 REMARK 3 L13: -0.4100 L23: 0.2366 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: 0.1648 S13: 0.0364 REMARK 3 S21: -0.4641 S22: -0.0411 S23: 0.4980 REMARK 3 S31: 0.3438 S32: -0.7769 S33: -0.0430 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 0 E 0 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5369 10.5714 31.7353 REMARK 3 T TENSOR REMARK 3 T11: 0.5622 T22: 0.5104 REMARK 3 T33: 0.4570 T12: 0.0687 REMARK 3 T13: -0.2570 T23: -0.0851 REMARK 3 L TENSOR REMARK 3 L11: 5.6823 L22: 2.4448 REMARK 3 L33: 3.8709 L12: 0.6636 REMARK 3 L13: -1.9782 L23: -2.9799 REMARK 3 S TENSOR REMARK 3 S11: 0.4479 S12: -1.0002 S13: 0.2189 REMARK 3 S21: 1.2255 S22: -0.0347 S23: -0.7810 REMARK 3 S31: -0.1821 S32: 0.9098 S33: 0.4391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4PBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26112 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 33.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% W/V PEG 1000, 12.5% W/V PEG REMARK 280 3350, 12.5% V/V 2-METHYL-2,4-PENTANEDIOL (MPD), 0.2 M 1,6- REMARK 280 HEXANEDIOL, 0.2 M 1-BUTANOL, 0.2 M (RS)-1,2-PROPANEDIOL, 0.2 M 2- REMARK 280 PROPANOL, 0.2 M 1,4-BUTANEDIOL, 0.2 M 1,3-PROPANEDIOL, AND 0.1 M REMARK 280 MES/IMIDAZOLE PH 6.5., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.91000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 90 REMARK 465 ALA A 91 REMARK 465 GLN A 92 REMARK 465 PHE A 93 REMARK 465 ASP A 94 REMARK 465 ALA A 95 REMARK 465 SER A 96 REMARK 465 HIS A 97 REMARK 465 TYR A 98 REMARK 465 ASP A 99 REMARK 465 SER A 100 REMARK 465 GLU A 101 REMARK 465 LYS A 102 REMARK 465 GLY A 103 REMARK 465 GLU A 104 REMARK 465 PHE A 105 REMARK 465 GLY A 106 REMARK 465 GLY A 107 REMARK 465 PHE A 108 REMARK 465 GLY A 109 REMARK 465 SER A 110 REMARK 465 VAL A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 PRO A 414 REMARK 465 GLU A 415 REMARK 465 GLY A 416 REMARK 465 SER A 417 REMARK 465 VAL A 418 REMARK 465 ASP A 419 REMARK 465 PRO A 420 REMARK 465 GLU A 421 REMARK 465 GLY A 422 REMARK 465 GLN A 423 REMARK 465 GLY A 424 REMARK 465 SER A 425 REMARK 465 GLN B 692 REMARK 465 SER B 693 REMARK 465 GLN B 694 REMARK 465 ALA B 695 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 509 O HOH A 512 1.92 REMARK 500 O HOH A 504 O HOH A 506 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 74 CA ALA A 209 2545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 109.38 -163.88 REMARK 500 LYS A 156 30.56 -90.90 REMARK 500 HIS A 200 3.23 86.68 REMARK 500 GLU A 213 63.82 -158.09 REMARK 500 LYS A 215 -0.39 67.09 REMARK 500 ASP A 249 1.19 -64.05 REMARK 500 ASN A 305 68.26 -151.10 REMARK 500 SER A 315 -34.09 177.56 REMARK 500 ASN A 397 -13.21 84.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 73 ASP A 74 145.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PBY RELATED DB: PDB REMARK 900 4PBY CONTAINS THE SAME PROTEIN RBAP48 IN COMPLEX WITH A SIMILAR REMARK 900 PEPTIDE OF MTA1 BUT OF DIFFERENT LENGTH DBREF 4PBZ A 1 425 UNP Q09028 RBBP4_HUMAN 1 425 DBREF 4PBZ B 670 695 UNP Q13330 MTA1_HUMAN 653 678 SEQRES 1 A 425 MET ALA ASP LYS GLU ALA ALA PHE ASP ASP ALA VAL GLU SEQRES 2 A 425 GLU ARG VAL ILE ASN GLU GLU TYR LYS ILE TRP LYS LYS SEQRES 3 A 425 ASN THR PRO PHE LEU TYR ASP LEU VAL MET THR HIS ALA SEQRES 4 A 425 LEU GLU TRP PRO SER LEU THR ALA GLN TRP LEU PRO ASP SEQRES 5 A 425 VAL THR ARG PRO GLU GLY LYS ASP PHE SER ILE HIS ARG SEQRES 6 A 425 LEU VAL LEU GLY THR HIS THR SER ASP GLU GLN ASN HIS SEQRES 7 A 425 LEU VAL ILE ALA SER VAL GLN LEU PRO ASN ASP ASP ALA SEQRES 8 A 425 GLN PHE ASP ALA SER HIS TYR ASP SER GLU LYS GLY GLU SEQRES 9 A 425 PHE GLY GLY PHE GLY SER VAL SER GLY LYS ILE GLU ILE SEQRES 10 A 425 GLU ILE LYS ILE ASN HIS GLU GLY GLU VAL ASN ARG ALA SEQRES 11 A 425 ARG TYR MET PRO GLN ASN PRO CYS ILE ILE ALA THR LYS SEQRES 12 A 425 THR PRO SER SER ASP VAL LEU VAL PHE ASP TYR THR LYS SEQRES 13 A 425 HIS PRO SER LYS PRO ASP PRO SER GLY GLU CYS ASN PRO SEQRES 14 A 425 ASP LEU ARG LEU ARG GLY HIS GLN LYS GLU GLY TYR GLY SEQRES 15 A 425 LEU SER TRP ASN PRO ASN LEU SER GLY HIS LEU LEU SER SEQRES 16 A 425 ALA SER ASP ASP HIS THR ILE CYS LEU TRP ASP ILE SER SEQRES 17 A 425 ALA VAL PRO LYS GLU GLY LYS VAL VAL ASP ALA LYS THR SEQRES 18 A 425 ILE PHE THR GLY HIS THR ALA VAL VAL GLU ASP VAL SER SEQRES 19 A 425 TRP HIS LEU LEU HIS GLU SER LEU PHE GLY SER VAL ALA SEQRES 20 A 425 ASP ASP GLN LYS LEU MET ILE TRP ASP THR ARG SER ASN SEQRES 21 A 425 ASN THR SER LYS PRO SER HIS SER VAL ASP ALA HIS THR SEQRES 22 A 425 ALA GLU VAL ASN CYS LEU SER PHE ASN PRO TYR SER GLU SEQRES 23 A 425 PHE ILE LEU ALA THR GLY SER ALA ASP LYS THR VAL ALA SEQRES 24 A 425 LEU TRP ASP LEU ARG ASN LEU LYS LEU LYS LEU HIS SER SEQRES 25 A 425 PHE GLU SER HIS LYS ASP GLU ILE PHE GLN VAL GLN TRP SEQRES 26 A 425 SER PRO HIS ASN GLU THR ILE LEU ALA SER SER GLY THR SEQRES 27 A 425 ASP ARG ARG LEU ASN VAL TRP ASP LEU SER LYS ILE GLY SEQRES 28 A 425 GLU GLU GLN SER PRO GLU ASP ALA GLU ASP GLY PRO PRO SEQRES 29 A 425 GLU LEU LEU PHE ILE HIS GLY GLY HIS THR ALA LYS ILE SEQRES 30 A 425 SER ASP PHE SER TRP ASN PRO ASN GLU PRO TRP VAL ILE SEQRES 31 A 425 CYS SER VAL SER GLU ASP ASN ILE MET GLN VAL TRP GLN SEQRES 32 A 425 MET ALA GLU ASN ILE TYR ASN ASP GLU ASP PRO GLU GLY SEQRES 33 A 425 SER VAL ASP PRO GLU GLY GLN GLY SER SEQRES 1 B 26 LYS LEU LEU SER SER SER GLU THR LYS ARG ALA ALA ARG SEQRES 2 B 26 ARG PRO TYR LYS PRO ILE ALA LEU ARG GLN SER GLN ALA FORMUL 3 HOH *119(H2 O) HELIX 1 AA1 ASP A 3 LEU A 31 1 29 HELIX 2 AA2 THR A 155 HIS A 157 5 3 HELIX 3 AA3 SER A 348 ILE A 350 5 3 HELIX 4 AA4 SER A 355 GLY A 362 1 8 HELIX 5 AA5 ALA A 405 ASN A 410 1 6 HELIX 6 AA6 SER B 673 ALA B 681 1 9 SHEET 1 AA1 4 TYR A 32 ALA A 39 0 SHEET 2 AA1 4 ILE A 398 MET A 404 -1 O VAL A 401 N MET A 36 SHEET 3 AA1 4 VAL A 389 SER A 394 -1 N SER A 392 O GLN A 400 SHEET 4 AA1 4 ILE A 377 TRP A 382 -1 N SER A 381 O CYS A 391 SHEET 1 AA2 4 GLN A 48 THR A 54 0 SHEET 2 AA2 4 PHE A 61 GLY A 69 -1 O ARG A 65 N LEU A 50 SHEET 3 AA2 4 ASN A 77 PRO A 87 -1 O VAL A 84 N HIS A 64 SHEET 4 AA2 4 ILE A 115 HIS A 123 -1 O GLU A 116 N SER A 83 SHEET 1 AA3 5 ARG A 129 MET A 133 0 SHEET 2 AA3 5 ASN A 136 LYS A 143 -1 O ALA A 141 N ARG A 131 SHEET 3 AA3 5 VAL A 149 ASP A 153 -1 O PHE A 152 N ILE A 140 SHEET 4 AA3 5 LEU A 171 ARG A 174 -1 O LEU A 173 N VAL A 149 SHEET 5 AA3 5 VAL A 217 ASP A 218 1 O VAL A 217 N ARG A 172 SHEET 1 AA4 4 LEU A 183 TRP A 185 0 SHEET 2 AA4 4 HIS A 192 ALA A 196 -1 O LEU A 194 N SER A 184 SHEET 3 AA4 4 ILE A 202 ASP A 206 -1 O TRP A 205 N LEU A 193 SHEET 4 AA4 4 THR A 221 PHE A 223 -1 O PHE A 223 N ILE A 202 SHEET 1 AA5 4 VAL A 230 TRP A 235 0 SHEET 2 AA5 4 LEU A 242 ALA A 247 -1 O GLY A 244 N SER A 234 SHEET 3 AA5 4 LYS A 251 ASP A 256 -1 O TRP A 255 N PHE A 243 SHEET 4 AA5 4 HIS A 267 ASP A 270 -1 O VAL A 269 N LEU A 252 SHEET 1 AA6 4 VAL A 276 PHE A 281 0 SHEET 2 AA6 4 ILE A 288 SER A 293 -1 O ALA A 290 N SER A 280 SHEET 3 AA6 4 THR A 297 ASP A 302 -1 O TRP A 301 N LEU A 289 SHEET 4 AA6 4 HIS A 311 GLU A 314 -1 O PHE A 313 N VAL A 298 SHEET 1 AA7 4 ILE A 320 TRP A 325 0 SHEET 2 AA7 4 ILE A 332 GLY A 337 -1 O SER A 336 N GLN A 322 SHEET 3 AA7 4 LEU A 342 ASP A 346 -1 O TRP A 345 N LEU A 333 SHEET 4 AA7 4 LEU A 366 HIS A 370 -1 O HIS A 370 N LEU A 342 CRYST1 61.800 59.820 68.070 90.00 99.19 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016181 0.000000 0.002618 0.00000 SCALE2 0.000000 0.016717 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014882 0.00000