PDB Short entry for 4PCD HEADER SOLUTE-BINDING PROTEIN 15-APR-14 4PCD TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 ROSEOBACTER DENITRIFICANS OCH 114 (RD1_1052, TARGET EFI-510238) WITH TITLE 3 BOUND L-GALACTONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: C4-DICARBOXYLATE TRANSPORT SYSTEM, SUBSTRATE-BINDING COMPND 3 PROTEIN, PUTATIVE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEOBACTER DENITRIFICANS; SOURCE 3 ORGANISM_COMMON: ERYTHROBACTER SP. (STRAIN OCH 114); SOURCE 4 ORGANISM_TAXID: 375451; SOURCE 5 STRAIN: OCH 114; SOURCE 6 GENE: RD1_1052; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 6 27-DEC-23 4PCD 1 REMARK REVDAT 5 25-DEC-19 4PCD 1 REMARK REVDAT 4 27-SEP-17 4PCD 1 REMARK REVDAT 3 26-AUG-15 4PCD 1 REMARK REVDAT 2 25-FEB-15 4PCD 1 JRNL REVDAT 1 07-MAY-14 4PCD 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 61847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6199 - 4.7614 0.94 2491 150 0.1713 0.2252 REMARK 3 2 4.7614 - 3.7800 1.00 2677 136 0.1256 0.1591 REMARK 3 3 3.7800 - 3.3024 1.00 2652 157 0.1395 0.1861 REMARK 3 4 3.3024 - 3.0005 1.00 2705 132 0.1472 0.2213 REMARK 3 5 3.0005 - 2.7855 1.00 2704 116 0.1365 0.1736 REMARK 3 6 2.7855 - 2.6213 1.00 2666 147 0.1322 0.1715 REMARK 3 7 2.6213 - 2.4900 1.00 2693 155 0.1175 0.1434 REMARK 3 8 2.4900 - 2.3816 1.00 2633 167 0.1232 0.1669 REMARK 3 9 2.3816 - 2.2900 1.00 2678 135 0.1159 0.1494 REMARK 3 10 2.2900 - 2.2110 1.00 2714 135 0.1185 0.1912 REMARK 3 11 2.2110 - 2.1418 1.00 2645 163 0.1133 0.1457 REMARK 3 12 2.1418 - 2.0806 1.00 2716 124 0.1203 0.1908 REMARK 3 13 2.0806 - 2.0258 1.00 2649 153 0.1214 0.1348 REMARK 3 14 2.0258 - 1.9764 1.00 2734 122 0.1208 0.1452 REMARK 3 15 1.9764 - 1.9315 1.00 2609 154 0.1228 0.1931 REMARK 3 16 1.9315 - 1.8904 1.00 2693 161 0.1356 0.1753 REMARK 3 17 1.8904 - 1.8526 1.00 2683 132 0.1406 0.1591 REMARK 3 18 1.8526 - 1.8176 1.00 2646 164 0.1428 0.2172 REMARK 3 19 1.8176 - 1.7851 1.00 2694 130 0.1518 0.2084 REMARK 3 20 1.7851 - 1.7549 1.00 2699 132 0.1600 0.1920 REMARK 3 21 1.7549 - 1.7266 1.00 2664 140 0.1568 0.1942 REMARK 3 22 1.7266 - 1.7000 1.00 2673 124 0.1682 0.1923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2393 REMARK 3 ANGLE : 1.186 3254 REMARK 3 CHIRALITY : 0.070 371 REMARK 3 PLANARITY : 0.006 429 REMARK 3 DIHEDRAL : 13.850 893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1428 32.7540 17.5432 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.1036 REMARK 3 T33: 0.0880 T12: -0.0079 REMARK 3 T13: 0.0055 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.3517 L22: 1.0323 REMARK 3 L33: 2.1233 L12: 0.1154 REMARK 3 L13: 0.7419 L23: 0.4903 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.1594 S13: 0.1773 REMARK 3 S21: -0.1473 S22: -0.0472 S23: 0.0732 REMARK 3 S31: -0.1611 S32: -0.0001 S33: 0.0058 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1197 38.1812 24.2997 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.0679 REMARK 3 T33: 0.1065 T12: 0.0037 REMARK 3 T13: -0.0115 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.6555 L22: 0.3574 REMARK 3 L33: 0.8154 L12: 0.0679 REMARK 3 L13: 0.0792 L23: -0.2209 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0226 S13: 0.2149 REMARK 3 S21: -0.0140 S22: -0.0145 S23: 0.0018 REMARK 3 S31: -0.2266 S32: -0.0656 S33: 0.0217 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6458 23.8176 40.3223 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.1122 REMARK 3 T33: 0.1107 T12: -0.0034 REMARK 3 T13: 0.0021 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.9901 L22: 0.8649 REMARK 3 L33: 1.1852 L12: 0.0512 REMARK 3 L13: 0.2869 L23: 0.0742 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: -0.0913 S13: -0.0617 REMARK 3 S21: 0.0720 S22: -0.0494 S23: -0.0732 REMARK 3 S31: 0.1192 S32: 0.0285 S33: 0.0464 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.9474 34.6702 40.5170 REMARK 3 T TENSOR REMARK 3 T11: 0.0829 T22: 0.0674 REMARK 3 T33: 0.0930 T12: 0.0003 REMARK 3 T13: 0.0037 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.9470 L22: 0.4716 REMARK 3 L33: 0.9461 L12: 0.0781 REMARK 3 L13: 0.3530 L23: 0.0552 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.0954 S13: 0.1666 REMARK 3 S21: 0.0345 S22: -0.0169 S23: 0.0018 REMARK 3 S31: -0.0893 S32: -0.0090 S33: 0.0166 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.0232 25.2286 25.7473 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0701 REMARK 3 T33: 0.0722 T12: 0.0040 REMARK 3 T13: 0.0198 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.1176 L22: 0.8328 REMARK 3 L33: 1.6593 L12: 0.1321 REMARK 3 L13: 1.0479 L23: 0.3088 REMARK 3 S TENSOR REMARK 3 S11: 0.1099 S12: 0.1713 S13: -0.0934 REMARK 3 S21: -0.0145 S22: 0.0065 S23: -0.0706 REMARK 3 S31: 0.1352 S32: 0.2103 S33: -0.0754 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.0471 29.5404 51.6196 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.1263 REMARK 3 T33: 0.1107 T12: -0.0182 REMARK 3 T13: -0.0249 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.4837 L22: 1.1937 REMARK 3 L33: 1.2100 L12: 0.6268 REMARK 3 L13: -0.6692 L23: -0.3691 REMARK 3 S TENSOR REMARK 3 S11: -0.0312 S12: -0.2137 S13: -0.1604 REMARK 3 S21: 0.1260 S22: -0.0449 S23: -0.1354 REMARK 3 S31: 0.0036 S32: 0.1299 S33: 0.0647 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3998 20.8426 50.0546 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1738 REMARK 3 T33: 0.1408 T12: -0.0427 REMARK 3 T13: 0.0039 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 5.1797 L22: 3.2825 REMARK 3 L33: 3.1602 L12: -0.4843 REMARK 3 L13: 0.5608 L23: 0.2475 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: -0.3091 S13: -0.0695 REMARK 3 S21: 0.1694 S22: -0.0567 S23: 0.1747 REMARK 3 S31: -0.0683 S32: -0.4192 S33: 0.0751 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32764 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 75.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.72600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (42.4 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 10 MM D-MANNONATE); RESERVOIR (0.1 M TRIS PH 8.5, REMARK 280 2.4 M DI-AMMONIUM PHOSPHATE); CRYOPROTECTION (80% RESERVOIR + 20% REMARK 280 DIETHYLENE GLYCOL), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.18750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.94450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.94450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.18750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 ASP A 15 REMARK 465 LEU A 16 REMARK 465 GLY A 17 REMARK 465 THR A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 465 LEU A 21 REMARK 465 TYR A 22 REMARK 465 PHE A 23 REMARK 465 GLN A 24 REMARK 465 GLU A 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 566 O HOH A 602 1.99 REMARK 500 O HOH A 750 O HOH A 759 2.03 REMARK 500 O HOH A 781 O HOH A 827 2.04 REMARK 500 O HOH A 579 O HOH A 605 2.11 REMARK 500 O HOH A 759 O HOH A 830 2.13 REMARK 500 O HOH A 819 O HOH A 822 2.16 REMARK 500 O HOH A 724 O HOH A 794 2.18 REMARK 500 OG SER A 25 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 125 HH12 ARG A 235 4456 1.56 REMARK 500 O HOH A 518 O HOH A 541 4556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 107 55.24 -148.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2Q2 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510238 RELATED DB: TARGETTRACK DBREF 4PCD A 27 325 UNP Q16BC9 Q16BC9_ROSDO 27 325 SEQADV 4PCD MSE A 4 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD HIS A 5 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD HIS A 6 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD HIS A 7 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD HIS A 8 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD HIS A 9 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD HIS A 10 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD SER A 11 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD SER A 12 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD GLY A 13 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD VAL A 14 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD ASP A 15 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD LEU A 16 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD GLY A 17 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD THR A 18 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD GLU A 19 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD ASN A 20 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD LEU A 21 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD TYR A 22 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD PHE A 23 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD GLN A 24 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD SER A 25 UNP Q16BC9 EXPRESSION TAG SEQADV 4PCD MSE A 26 UNP Q16BC9 EXPRESSION TAG SEQRES 1 A 322 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 322 GLY THR GLU ASN LEU TYR PHE GLN SER MSE GLN GLU MSE SEQRES 3 A 322 THR LEU LYS LEU GLY HIS LEU ALA ASN GLU GLN ASN ALA SEQRES 4 A 322 TRP HIS LEU ALA ALA VAL LYS PHE GLY GLU GLU LEU SER SEQRES 5 A 322 THR LEU THR ASP GLY ARG ILE ALA VAL GLU VAL PHE PRO SEQRES 6 A 322 ASN GLU SER LEU GLY LYS GLU ILE ASP LEU ILE ASN GLY SEQRES 7 A 322 MSE GLN LEU GLY THR VAL ASP MSE THR ILE THR GLY GLU SEQRES 8 A 322 SER LEU GLN ASN TRP ALA PRO MSE ALA ALA LEU LEU ALA SEQRES 9 A 322 VAL PRO TYR ALA TYR LYS SER LEU GLU HIS MSE ASP GLU SEQRES 10 A 322 VAL ALA SER GLY GLU ILE GLY GLU GLN ILE LYS GLN GLN SEQRES 11 A 322 ILE ILE GLU LYS ALA GLN VAL ARG PRO ILE ALA PHE PHE SEQRES 12 A 322 ALA ARG GLY PRO ARG ASN LEU THR SER GLN ARG PRO ILE SEQRES 13 A 322 THR SER PRO ALA ASP LEU ASP GLY MSE LYS MSE ARG VAL SEQRES 14 A 322 PRO ASN VAL PRO LEU PHE VAL ASP VAL TRP SER ALA LEU SEQRES 15 A 322 GLY ALA SER PRO THR PRO MSE ALA PHE SER GLU VAL PHE SEQRES 16 A 322 THR SER LEU GLN ASN GLY VAL ILE ASP GLY GLN GLU ASN SEQRES 17 A 322 PRO LEU ALA LEU ILE ARG SER ALA ASN PHE ASN GLU VAL SEQRES 18 A 322 GLN GLY TYR VAL ASN GLN THR GLU HIS VAL ARG SER TRP SEQRES 19 A 322 ILE TYR LEU THR ILE ALA GLU SER THR TRP ALA LYS LEU SEQRES 20 A 322 SER GLU ASP ASP GLN ASN ALA VAL MSE GLN ALA ALA ALA SEQRES 21 A 322 THR ALA GLN GLU TYR GLU ARG GLY LEU LEU LEU GLU SER SEQRES 22 A 322 LEU ALA GLU ASP ARG GLY TYR LEU GLU SER LYS GLY MSE SEQRES 23 A 322 THR PHE VAL GLU VAL ASP GLY ALA ALA PHE GLN ALA ALA SEQRES 24 A 322 ALA LYS ASP ALA VAL LEU ALA ASN VAL SER GLU GLU ILE SEQRES 25 A 322 ARG PRO ILE VAL GLU SER LEU PHE SER GLU MODRES 4PCD MSE A 29 MET MODIFIED RESIDUE MODRES 4PCD MSE A 82 MET MODIFIED RESIDUE MODRES 4PCD MSE A 89 MET MODIFIED RESIDUE MODRES 4PCD MSE A 102 MET MODIFIED RESIDUE MODRES 4PCD MSE A 118 MET MODIFIED RESIDUE MODRES 4PCD MSE A 168 MET MODIFIED RESIDUE MODRES 4PCD MSE A 170 MET MODIFIED RESIDUE MODRES 4PCD MSE A 192 MET MODIFIED RESIDUE MODRES 4PCD MSE A 259 MET MODIFIED RESIDUE MODRES 4PCD MSE A 289 MET MODIFIED RESIDUE HET MSE A 26 17 HET MSE A 29 17 HET MSE A 82 17 HET MSE A 89 17 HET MSE A 102 17 HET MSE A 118 17 HET MSE A 168 17 HET MSE A 170 17 HET MSE A 192 17 HET MSE A 259 17 HET MSE A 289 17 HET 2Q2 A 401 13 HETNAM MSE SELENOMETHIONINE HETNAM 2Q2 L-GALACTONIC ACID FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 2Q2 C6 H12 O7 FORMUL 3 HOH *346(H2 O) HELIX 1 AA1 ASN A 41 THR A 58 1 18 HELIX 2 AA2 LYS A 74 GLY A 85 1 12 HELIX 3 AA3 GLY A 93 TRP A 99 5 7 HELIX 4 AA4 ALA A 100 VAL A 108 5 9 HELIX 5 AA5 SER A 114 GLY A 124 1 11 HELIX 6 AA6 GLY A 124 GLN A 139 1 16 HELIX 7 AA7 SER A 161 LEU A 165 5 5 HELIX 8 AA8 VAL A 175 GLY A 186 1 12 HELIX 9 AA9 ALA A 193 SER A 195 5 3 HELIX 10 AB1 GLU A 196 ASN A 203 1 8 HELIX 11 AB2 LEU A 213 ALA A 219 1 7 HELIX 12 AB3 ASN A 220 VAL A 224 5 5 HELIX 13 AB4 GLU A 244 LEU A 250 1 7 HELIX 14 AB5 SER A 251 LYS A 287 1 37 HELIX 15 AB6 ASP A 295 VAL A 311 1 17 HELIX 16 AB7 ILE A 315 SER A 324 1 10 SHEET 1 AA1 5 ILE A 62 PHE A 67 0 SHEET 2 AA1 5 MSE A 29 GLY A 34 1 N LEU A 31 O ALA A 63 SHEET 3 AA1 5 MSE A 89 THR A 92 1 O MSE A 89 N GLY A 34 SHEET 4 AA1 5 TRP A 237 ALA A 243 -1 O THR A 241 N THR A 90 SHEET 5 AA1 5 VAL A 140 ALA A 147 -1 N ARG A 141 O ILE A 242 SHEET 1 AA2 4 GLN A 209 PRO A 212 0 SHEET 2 AA2 4 ARG A 151 SER A 155 -1 N THR A 154 O GLN A 209 SHEET 3 AA2 4 TYR A 227 VAL A 234 -1 O ASN A 229 N LEU A 153 SHEET 4 AA2 4 THR A 290 VAL A 292 1 O VAL A 292 N GLN A 230 SHEET 1 AA3 2 LYS A 169 VAL A 172 0 SHEET 2 AA3 2 SER A 188 PRO A 191 1 O THR A 190 N MSE A 170 LINK C SER A 25 N MSE A 26 1555 1555 1.33 LINK C MSE A 26 N GLN A 27 1555 1555 1.32 LINK C GLU A 28 N MSE A 29 1555 1555 1.33 LINK C MSE A 29 N THR A 30 1555 1555 1.33 LINK C GLY A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N GLN A 83 1555 1555 1.32 LINK C ASP A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N THR A 90 1555 1555 1.33 LINK C PRO A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N ALA A 103 1555 1555 1.32 LINK C HIS A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N ASP A 119 1555 1555 1.34 LINK C GLY A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N LYS A 169 1555 1555 1.33 LINK C LYS A 169 N MSE A 170 1555 1555 1.32 LINK C MSE A 170 N ARG A 171 1555 1555 1.33 LINK C PRO A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N ALA A 193 1555 1555 1.33 LINK C VAL A 258 N MSE A 259 1555 1555 1.32 LINK C MSE A 259 N GLN A 260 1555 1555 1.33 LINK C GLY A 288 N MSE A 289 1555 1555 1.33 LINK C MSE A 289 N THR A 290 1555 1555 1.33 SITE 1 AC1 13 LEU A 36 GLU A 75 GLY A 93 GLU A 94 SITE 2 AC1 13 SER A 95 ARG A 148 ARG A 151 ARG A 171 SITE 3 AC1 13 PRO A 173 ASN A 211 LEU A 215 HOH A 644 SITE 4 AC1 13 HOH A 678 CRYST1 52.375 73.260 75.889 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013177 0.00000