PDB Short entry for 4PCH HEADER VIRAL PROTEIN 15-APR-14 4PCH TITLE STRUCTURE OF HUMAN POLYOMAVIRUS 7 (HPYV7) VP1 PENTAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POLYOMAVIRUS HPYV7; SOURCE 3 ORGANISM_TAXID: 746831; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MAJOR VIRAL CAPSID PROTEIN, JELLY-ROLL TOPOLOGY, ATTACHMENT TO HOST- KEYWDS 2 CELL RECEPTORS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.J.STROH,T.STEHLE REVDAT 4 27-SEP-23 4PCH 1 REMARK REVDAT 3 22-NOV-17 4PCH 1 SOURCE JRNL REMARK REVDAT 2 03-SEP-14 4PCH 1 JRNL REVDAT 1 06-AUG-14 4PCH 0 JRNL AUTH L.J.STROH,U.NEU,B.S.BLAUM,M.H.BUCH,R.L.GARCEA,T.STEHLE JRNL TITL STRUCTURE ANALYSIS OF THE MAJOR CAPSID PROTEINS OF HUMAN JRNL TITL 2 POLYOMAVIRUSES 6 AND 7 REVEALS AN OBSTRUCTED SIALIC ACID JRNL TITL 3 BINDING SITE. JRNL REF J.VIROL. V. 88 10831 2014 JRNL REFN ESSN 1098-5514 JRNL PMID 25008942 JRNL DOI 10.1128/JVI.01084-14 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 152915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8094 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9446 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 458 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9689 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.976 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10133 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 9541 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13872 ; 1.390 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 21905 ; 0.759 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1350 ; 6.189 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 423 ;33.909 ;23.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1518 ;12.132 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 70 ;17.297 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1584 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11776 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2316 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5232 ; 1.707 ; 3.556 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5231 ; 1.702 ; 3.555 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6539 ; 2.199 ; 4.777 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 6540 ; 2.199 ; 4.777 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4901 ; 2.799 ; 4.334 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4901 ; 2.799 ; 4.334 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 7301 ; 3.718 ; 5.572 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11712 ; 6.270 ;10.522 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11712 ; 6.269 ;10.522 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 28 A 47 5 REMARK 3 1 B 28 B 47 5 REMARK 3 1 C 28 C 47 5 REMARK 3 1 D 28 D 47 5 REMARK 3 1 E 28 E 47 5 REMARK 3 2 A 56 A 80 5 REMARK 3 2 B 56 B 80 5 REMARK 3 2 C 56 C 80 5 REMARK 3 2 D 56 D 80 5 REMARK 3 2 E 56 E 80 5 REMARK 3 3 A 98 A 155 5 REMARK 3 3 B 98 B 155 5 REMARK 3 3 C 98 C 155 5 REMARK 3 3 D 98 D 155 5 REMARK 3 3 E 98 E 155 5 REMARK 3 4 A 169 A 251 5 REMARK 3 4 B 169 B 251 5 REMARK 3 4 C 169 C 251 5 REMARK 3 4 D 169 D 251 5 REMARK 3 4 E 169 E 251 5 REMARK 3 5 A 269 A 278 5 REMARK 3 5 B 269 B 278 5 REMARK 3 5 C 269 C 278 5 REMARK 3 5 D 269 D 278 5 REMARK 3 5 E 269 E 278 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1140 ; 0.11 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1140 ; 0.12 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1140 ; 0.12 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 1140 ; 0.10 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 E (A): 1140 ; 0.11 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 1704 ; 0.34 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 1704 ; 0.36 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 1704 ; 0.35 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 1704 ; 0.31 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 E (A): 1704 ; 0.41 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1140 ; 1.69 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1140 ; 1.43 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1140 ; 1.57 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 1140 ; 1.59 ; 2.00 REMARK 3 MEDIUM THERMAL 1 E (A**2): 1140 ; 1.56 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1704 ; 2.19 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1704 ; 1.88 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 1704 ; 2.43 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 1704 ; 1.97 ; 10.00 REMARK 3 LOOSE THERMAL 1 E (A**2): 1704 ; 2.01 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): -33.6828 60.3626 -17.3035 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.0944 REMARK 3 T33: 0.0608 T12: -0.0269 REMARK 3 T13: 0.0218 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 1.7816 L22: 1.1922 REMARK 3 L33: 1.0511 L12: 0.5906 REMARK 3 L13: 0.0330 L23: 0.2383 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: -0.2074 S13: 0.2242 REMARK 3 S21: 0.0549 S22: 0.0275 S23: -0.0807 REMARK 3 S31: -0.2628 S32: 0.1522 S33: -0.0760 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4222 64.6347 -30.7313 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.1236 REMARK 3 T33: 0.1523 T12: -0.0881 REMARK 3 T13: 0.0375 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.7853 L22: 0.9985 REMARK 3 L33: 3.2681 L12: 0.1645 REMARK 3 L13: 0.3006 L23: 0.6304 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.1360 S13: 0.3557 REMARK 3 S21: -0.1898 S22: 0.0211 S23: -0.1584 REMARK 3 S31: -0.3726 S32: 0.2762 S33: -0.0392 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5382 56.1674 -18.0057 REMARK 3 T TENSOR REMARK 3 T11: 0.0723 T22: 0.0972 REMARK 3 T33: 0.0438 T12: -0.0330 REMARK 3 T13: 0.0096 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.6470 L22: 0.8575 REMARK 3 L33: 1.1944 L12: 0.1486 REMARK 3 L13: -0.1143 L23: 0.1730 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.0672 S13: 0.0957 REMARK 3 S21: 0.0428 S22: 0.0424 S23: -0.1231 REMARK 3 S31: -0.1722 S32: 0.2603 S33: -0.0658 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): -48.0973 40.8741 3.0601 REMARK 3 T TENSOR REMARK 3 T11: 0.0806 T22: 0.0604 REMARK 3 T33: 0.0383 T12: 0.0053 REMARK 3 T13: 0.0150 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.9021 L22: 0.5897 REMARK 3 L33: 3.6238 L12: 0.2266 REMARK 3 L13: 1.0060 L23: 0.3613 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: -0.2240 S13: 0.0565 REMARK 3 S21: 0.1422 S22: -0.0135 S23: 0.0149 REMARK 3 S31: 0.0219 S32: -0.2106 S33: -0.0153 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 108 B 215 REMARK 3 ORIGIN FOR THE GROUP (A): -49.3615 46.4252 -14.1171 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.0341 REMARK 3 T33: 0.0202 T12: 0.0096 REMARK 3 T13: 0.0098 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.6430 L22: 1.4475 REMARK 3 L33: 1.2229 L12: 0.3430 REMARK 3 L13: 0.1319 L23: 0.5925 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.0184 S13: 0.1052 REMARK 3 S21: -0.0263 S22: 0.0066 S23: 0.0759 REMARK 3 S31: -0.1607 S32: -0.0403 S33: -0.0210 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 216 B 287 REMARK 3 ORIGIN FOR THE GROUP (A): -45.4778 38.4765 -5.5357 REMARK 3 T TENSOR REMARK 3 T11: 0.0238 T22: 0.0266 REMARK 3 T33: 0.0138 T12: 0.0024 REMARK 3 T13: -0.0002 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.4747 L22: 0.8668 REMARK 3 L33: 2.3157 L12: 0.1140 REMARK 3 L13: 0.4821 L23: 0.7140 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -0.0179 S13: 0.0488 REMARK 3 S21: 0.0599 S22: 0.0453 S23: -0.0356 REMARK 3 S31: -0.0913 S32: 0.0641 S33: -0.0094 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 23 C 86 REMARK 3 ORIGIN FOR THE GROUP (A): -37.7688 9.9142 -10.8795 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.0877 REMARK 3 T33: 0.1003 T12: 0.0169 REMARK 3 T13: -0.0282 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.1378 L22: 1.1679 REMARK 3 L33: 2.4183 L12: -0.1988 REMARK 3 L13: 0.6837 L23: -0.6269 REMARK 3 S TENSOR REMARK 3 S11: 0.1182 S12: -0.1356 S13: -0.2629 REMARK 3 S21: 0.0563 S22: -0.0334 S23: -0.1271 REMARK 3 S31: 0.3083 S32: 0.1709 S33: -0.0848 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 87 C 107 REMARK 3 ORIGIN FOR THE GROUP (A): -27.9671 11.6605 3.4338 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.3375 REMARK 3 T33: 0.1502 T12: -0.0875 REMARK 3 T13: -0.0914 T23: 0.1371 REMARK 3 L TENSOR REMARK 3 L11: 2.4802 L22: 2.7938 REMARK 3 L33: 6.4937 L12: -0.7103 REMARK 3 L13: 2.5651 L23: 1.9862 REMARK 3 S TENSOR REMARK 3 S11: -0.1175 S12: -0.1956 S13: -0.0935 REMARK 3 S21: 0.5237 S22: 0.0220 S23: -0.0734 REMARK 3 S31: 0.2047 S32: 0.3028 S33: 0.0955 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 108 C 287 REMARK 3 ORIGIN FOR THE GROUP (A): -41.4576 19.0687 -15.5075 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0089 REMARK 3 T33: 0.0143 T12: -0.0017 REMARK 3 T13: -0.0117 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.7387 L22: 0.7660 REMARK 3 L33: 1.4219 L12: 0.0231 REMARK 3 L13: -0.0213 L23: -0.3006 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.0202 S13: -0.0453 REMARK 3 S21: 0.0521 S22: -0.0184 S23: -0.0476 REMARK 3 S31: 0.0150 S32: 0.0839 S33: 0.0043 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 23 D 138 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7840 22.0060 -32.2264 REMARK 3 T TENSOR REMARK 3 T11: 0.0376 T22: 0.2411 REMARK 3 T33: 0.1765 T12: 0.0347 REMARK 3 T13: 0.0366 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.5937 L22: 1.6971 REMARK 3 L33: 1.2534 L12: -0.0006 REMARK 3 L13: 0.0657 L23: -0.6309 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: 0.0615 S13: -0.2025 REMARK 3 S21: -0.0421 S22: -0.0743 S23: -0.3713 REMARK 3 S31: 0.0987 S32: 0.4051 S33: 0.0831 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 139 D 204 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9764 8.3801 -28.7354 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.1246 REMARK 3 T33: 0.1452 T12: 0.0844 REMARK 3 T13: 0.0209 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.2819 L22: 0.8894 REMARK 3 L33: 1.8123 L12: 0.5209 REMARK 3 L13: 0.9471 L23: -0.1172 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.0563 S13: -0.3580 REMARK 3 S21: -0.0872 S22: -0.0585 S23: -0.2189 REMARK 3 S31: 0.2994 S32: 0.1907 S33: 0.0446 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 205 D 287 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2137 23.4441 -30.1903 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.1888 REMARK 3 T33: 0.1242 T12: 0.0197 REMARK 3 T13: 0.0227 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.6530 L22: 1.2452 REMARK 3 L33: 0.8533 L12: -0.0609 REMARK 3 L13: 0.2071 L23: -0.3660 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.1002 S13: -0.1994 REMARK 3 S21: 0.0178 S22: -0.0026 S23: -0.2565 REMARK 3 S31: 0.0708 S32: 0.2135 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 23 E 58 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8870 52.7135 -30.0495 REMARK 3 T TENSOR REMARK 3 T11: 0.1054 T22: 0.3999 REMARK 3 T33: 0.1620 T12: -0.1163 REMARK 3 T13: 0.0344 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 3.9086 L22: 1.0317 REMARK 3 L33: 0.6027 L12: -0.9009 REMARK 3 L13: 0.6534 L23: -0.2352 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: 0.0549 S13: 0.2469 REMARK 3 S21: 0.0586 S22: 0.0636 S23: -0.2209 REMARK 3 S31: -0.1589 S32: 0.4354 S33: 0.0425 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 59 E 107 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5992 48.6548 -32.8009 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.2545 REMARK 3 T33: 0.1477 T12: -0.0339 REMARK 3 T13: 0.0440 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 2.3629 L22: 0.8044 REMARK 3 L33: 2.3619 L12: 0.4454 REMARK 3 L13: 1.3934 L23: 0.4024 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: -0.0150 S13: 0.0778 REMARK 3 S21: -0.0123 S22: 0.0621 S23: -0.2435 REMARK 3 S31: -0.0347 S32: 0.3295 S33: -0.0140 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 108 E 288 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3402 43.2784 -35.9464 REMARK 3 T TENSOR REMARK 3 T11: 0.0434 T22: 0.1792 REMARK 3 T33: 0.0566 T12: -0.0402 REMARK 3 T13: 0.0409 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.4883 L22: 0.7134 REMARK 3 L33: 0.6599 L12: -0.0147 REMARK 3 L13: -0.0240 L23: 0.1080 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: -0.0127 S13: -0.0453 REMARK 3 S21: -0.0707 S22: 0.0299 S23: -0.1422 REMARK 3 S31: -0.0224 S32: 0.2013 S33: -0.0122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PCH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR (DCCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 161009 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3S7X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA-MALONATE PH 4.5, 15% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 104.83500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.21500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 104.83500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.21500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 MET A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 THR A 51 REMARK 465 THR A 52 REMARK 465 GLY A 53 REMARK 465 ASN A 54 REMARK 465 PRO A 87 REMARK 465 ASP A 88 REMARK 465 ALA A 89 REMARK 465 MET A 90 REMARK 465 CYS A 91 REMARK 465 GLU A 92 REMARK 465 ASP A 93 REMARK 465 THR A 94 REMARK 465 LYS A 287 REMARK 465 GLN A 288 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 HIS B 18 REMARK 465 MET B 19 REMARK 465 GLY B 20 REMARK 465 GLY B 21 REMARK 465 GLN B 288 REMARK 465 GLY C 16 REMARK 465 SER C 17 REMARK 465 HIS C 18 REMARK 465 MET C 19 REMARK 465 GLY C 20 REMARK 465 GLY C 21 REMARK 465 VAL C 22 REMARK 465 GLN C 288 REMARK 465 GLY D 16 REMARK 465 SER D 17 REMARK 465 HIS D 18 REMARK 465 MET D 19 REMARK 465 GLY D 20 REMARK 465 GLY D 21 REMARK 465 VAL D 22 REMARK 465 LYS D 48 REMARK 465 ALA D 49 REMARK 465 ALA D 50 REMARK 465 THR D 51 REMARK 465 THR D 52 REMARK 465 GLY D 53 REMARK 465 ILE D 86 REMARK 465 PRO D 87 REMARK 465 ASP D 88 REMARK 465 ALA D 89 REMARK 465 MET D 90 REMARK 465 CYS D 91 REMARK 465 GLU D 92 REMARK 465 ASP D 93 REMARK 465 THR D 94 REMARK 465 MET D 95 REMARK 465 LYS D 287 REMARK 465 GLN D 288 REMARK 465 GLY E 16 REMARK 465 SER E 17 REMARK 465 HIS E 18 REMARK 465 MET E 19 REMARK 465 GLY E 20 REMARK 465 GLY E 21 REMARK 465 VAL E 22 REMARK 465 GLU E 92 REMARK 465 ASP E 93 REMARK 465 GLN E 288 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 MET A 95 CG SD CE REMARK 470 GLU A 153 CD OE1 OE2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 ARG A 285 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 23 CG CD OE1 OE2 REMARK 470 GLU C 85 CD OE1 OE2 REMARK 470 ASP C 88 CG OD1 OD2 REMARK 470 MET C 90 CG SD CE REMARK 470 CYS C 91 SG REMARK 470 GLU C 92 CG CD OE1 OE2 REMARK 470 ASP C 93 CG OD1 OD2 REMARK 470 LYS C 287 CG CD CE NZ REMARK 470 GLU D 23 CG CD OE1 OE2 REMARK 470 ASP D 26 CG OD1 OD2 REMARK 470 GLU D 32 CG CD OE1 OE2 REMARK 470 ASP D 33 CG OD1 OD2 REMARK 470 ASN D 54 CG OD1 ND2 REMARK 470 GLU D 85 CG CD OE1 OE2 REMARK 470 ARG D 285 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 23 CG CD OE1 OE2 REMARK 470 LEU E 30 CG CD1 CD2 REMARK 470 GLU E 32 CG CD OE1 OE2 REMARK 470 GLU E 85 CD OE1 OE2 REMARK 470 ASP E 88 CG OD1 OD2 REMARK 470 GLU E 228 CG CD OE1 OE2 REMARK 470 ASN E 265 CG OD1 ND2 REMARK 470 CYS E 281 SG REMARK 470 LYS E 287 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 200 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 285 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 25 -137.41 -106.24 REMARK 500 THR A 63 157.69 72.62 REMARK 500 MET A 113 -99.61 -122.98 REMARK 500 MET A 113 -95.32 -125.70 REMARK 500 LYS A 195 -141.04 -129.95 REMARK 500 LEU B 25 -145.30 -99.03 REMARK 500 THR B 63 158.50 75.15 REMARK 500 GLU B 92 -101.80 42.35 REMARK 500 MET B 113 -98.01 -125.30 REMARK 500 MET B 113 -93.34 -128.11 REMARK 500 LYS B 195 -139.98 -127.95 REMARK 500 LEU C 25 -145.25 -105.01 REMARK 500 THR C 63 158.79 77.80 REMARK 500 GLU C 92 -138.00 62.42 REMARK 500 MET C 113 -94.98 -123.27 REMARK 500 MET C 113 -90.23 -125.94 REMARK 500 LYS C 195 -141.01 -123.35 REMARK 500 LEU D 25 -136.59 -96.54 REMARK 500 PHE D 46 73.39 -100.41 REMARK 500 THR D 63 157.25 74.13 REMARK 500 MET D 113 -99.36 -124.64 REMARK 500 MET D 113 -95.89 -126.75 REMARK 500 LYS D 195 -138.83 -123.10 REMARK 500 LEU E 25 -141.22 -104.24 REMARK 500 PHE E 46 72.61 -100.37 REMARK 500 THR E 63 156.81 72.21 REMARK 500 MET E 113 -96.78 -124.98 REMARK 500 MET E 113 -91.83 -128.02 REMARK 500 LYS E 195 -137.31 -126.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 557 DISTANCE = 6.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PCG RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN POLYOMAVIRUS 6 (HPYV6) VP1 PENTAMER DBREF 4PCH A 20 287 UNP D6QWK5 D6QWK5_9POLY 21 288 DBREF 4PCH B 20 287 UNP D6QWK5 D6QWK5_9POLY 21 288 DBREF 4PCH C 20 287 UNP D6QWK5 D6QWK5_9POLY 21 288 DBREF 4PCH D 20 287 UNP D6QWK5 D6QWK5_9POLY 21 288 DBREF 4PCH E 20 287 UNP D6QWK5 D6QWK5_9POLY 21 288 SEQADV 4PCH GLY A 16 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH SER A 17 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH HIS A 18 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH MET A 19 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH GLN A 288 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH GLY B 16 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH SER B 17 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH HIS B 18 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH MET B 19 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH GLN B 288 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH GLY C 16 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH SER C 17 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH HIS C 18 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH MET C 19 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH GLN C 288 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH GLY D 16 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH SER D 17 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH HIS D 18 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH MET D 19 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH GLN D 288 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH GLY E 16 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH SER E 17 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH HIS E 18 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH MET E 19 UNP D6QWK5 EXPRESSION TAG SEQADV 4PCH GLN E 288 UNP D6QWK5 EXPRESSION TAG SEQRES 1 A 273 GLY SER HIS MET GLY GLY VAL GLU VAL LEU ASP THR VAL SEQRES 2 A 273 PRO LEU THR GLU ASP THR GLN TYR LYS VAL GLU ALA VAL SEQRES 3 A 273 LEU LEU PRO ASN PHE GLY LYS ALA ALA THR THR GLY ASN SEQRES 4 A 273 PHE GLN SER ARG GLY LEU PRO TYR THR MET SER ASP THR SEQRES 5 A 273 LEU GLY PRO GLY ALA ALA LEU CYS TYR SER VAL ALA VAL SEQRES 6 A 273 ILE ASN LEU PRO GLU ILE PRO ASP ALA MET CYS GLU ASP SEQRES 7 A 273 THR MET ILE VAL TRP GLU ALA TYR ARG LEU GLU THR GLU SEQRES 8 A 273 LEU LEU PHE ALA PRO GLN MET ALA SER SER GLY TYR GLN SEQRES 9 A 273 ARG ALA ASN GLY THR LEU ALA GLY ILE GLU GLY THR GLN SEQRES 10 A 273 LEU TYR PHE TRP ALA CYS GLY GLY GLY PRO LEU ASP VAL SEQRES 11 A 273 ILE GLY ILE ASN PRO ASP PRO GLU ARG LEU LYS VAL ASN SEQRES 12 A 273 GLU ALA LEU GLU GLY PRO GLY ASN SER ASP VAL ALA SER SEQRES 13 A 273 LEU GLN ALA LEU ARG LYS GLN VAL ASN ALA ALA ASN PHE SEQRES 14 A 273 PRO VAL GLU LEU TRP VAL ALA ASP PRO THR LYS ASN ASP SEQRES 15 A 273 ASN THR ARG TYR PHE GLY ARG VAL VAL GLY GLY GLY VAL SEQRES 16 A 273 THR PRO PRO VAL VAL SER TYR GLY ASN GLN SER THR THR SEQRES 17 A 273 PRO LEU ILE ASP GLU ASN GLY VAL GLY ILE LEU CYS THR SEQRES 18 A 273 PHE GLY SER VAL TYR LEU THR SER ALA ASP MET VAL GLY SEQRES 19 A 273 MET THR GLY LEU PRO GLY LEU PRO THR LEU SER ALA ASP SEQRES 20 A 273 TYR SER ASN GLN ARG THR VAL GLN ALA GLY TYR GLY ARG SEQRES 21 A 273 PHE PHE ARG VAL HIS CYS ARG GLN ARG ARG ILE LYS GLN SEQRES 1 B 273 GLY SER HIS MET GLY GLY VAL GLU VAL LEU ASP THR VAL SEQRES 2 B 273 PRO LEU THR GLU ASP THR GLN TYR LYS VAL GLU ALA VAL SEQRES 3 B 273 LEU LEU PRO ASN PHE GLY LYS ALA ALA THR THR GLY ASN SEQRES 4 B 273 PHE GLN SER ARG GLY LEU PRO TYR THR MET SER ASP THR SEQRES 5 B 273 LEU GLY PRO GLY ALA ALA LEU CYS TYR SER VAL ALA VAL SEQRES 6 B 273 ILE ASN LEU PRO GLU ILE PRO ASP ALA MET CYS GLU ASP SEQRES 7 B 273 THR MET ILE VAL TRP GLU ALA TYR ARG LEU GLU THR GLU SEQRES 8 B 273 LEU LEU PHE ALA PRO GLN MET ALA SER SER GLY TYR GLN SEQRES 9 B 273 ARG ALA ASN GLY THR LEU ALA GLY ILE GLU GLY THR GLN SEQRES 10 B 273 LEU TYR PHE TRP ALA CYS GLY GLY GLY PRO LEU ASP VAL SEQRES 11 B 273 ILE GLY ILE ASN PRO ASP PRO GLU ARG LEU LYS VAL ASN SEQRES 12 B 273 GLU ALA LEU GLU GLY PRO GLY ASN SER ASP VAL ALA SER SEQRES 13 B 273 LEU GLN ALA LEU ARG LYS GLN VAL ASN ALA ALA ASN PHE SEQRES 14 B 273 PRO VAL GLU LEU TRP VAL ALA ASP PRO THR LYS ASN ASP SEQRES 15 B 273 ASN THR ARG TYR PHE GLY ARG VAL VAL GLY GLY GLY VAL SEQRES 16 B 273 THR PRO PRO VAL VAL SER TYR GLY ASN GLN SER THR THR SEQRES 17 B 273 PRO LEU ILE ASP GLU ASN GLY VAL GLY ILE LEU CYS THR SEQRES 18 B 273 PHE GLY SER VAL TYR LEU THR SER ALA ASP MET VAL GLY SEQRES 19 B 273 MET THR GLY LEU PRO GLY LEU PRO THR LEU SER ALA ASP SEQRES 20 B 273 TYR SER ASN GLN ARG THR VAL GLN ALA GLY TYR GLY ARG SEQRES 21 B 273 PHE PHE ARG VAL HIS CYS ARG GLN ARG ARG ILE LYS GLN SEQRES 1 C 273 GLY SER HIS MET GLY GLY VAL GLU VAL LEU ASP THR VAL SEQRES 2 C 273 PRO LEU THR GLU ASP THR GLN TYR LYS VAL GLU ALA VAL SEQRES 3 C 273 LEU LEU PRO ASN PHE GLY LYS ALA ALA THR THR GLY ASN SEQRES 4 C 273 PHE GLN SER ARG GLY LEU PRO TYR THR MET SER ASP THR SEQRES 5 C 273 LEU GLY PRO GLY ALA ALA LEU CYS TYR SER VAL ALA VAL SEQRES 6 C 273 ILE ASN LEU PRO GLU ILE PRO ASP ALA MET CYS GLU ASP SEQRES 7 C 273 THR MET ILE VAL TRP GLU ALA TYR ARG LEU GLU THR GLU SEQRES 8 C 273 LEU LEU PHE ALA PRO GLN MET ALA SER SER GLY TYR GLN SEQRES 9 C 273 ARG ALA ASN GLY THR LEU ALA GLY ILE GLU GLY THR GLN SEQRES 10 C 273 LEU TYR PHE TRP ALA CYS GLY GLY GLY PRO LEU ASP VAL SEQRES 11 C 273 ILE GLY ILE ASN PRO ASP PRO GLU ARG LEU LYS VAL ASN SEQRES 12 C 273 GLU ALA LEU GLU GLY PRO GLY ASN SER ASP VAL ALA SER SEQRES 13 C 273 LEU GLN ALA LEU ARG LYS GLN VAL ASN ALA ALA ASN PHE SEQRES 14 C 273 PRO VAL GLU LEU TRP VAL ALA ASP PRO THR LYS ASN ASP SEQRES 15 C 273 ASN THR ARG TYR PHE GLY ARG VAL VAL GLY GLY GLY VAL SEQRES 16 C 273 THR PRO PRO VAL VAL SER TYR GLY ASN GLN SER THR THR SEQRES 17 C 273 PRO LEU ILE ASP GLU ASN GLY VAL GLY ILE LEU CYS THR SEQRES 18 C 273 PHE GLY SER VAL TYR LEU THR SER ALA ASP MET VAL GLY SEQRES 19 C 273 MET THR GLY LEU PRO GLY LEU PRO THR LEU SER ALA ASP SEQRES 20 C 273 TYR SER ASN GLN ARG THR VAL GLN ALA GLY TYR GLY ARG SEQRES 21 C 273 PHE PHE ARG VAL HIS CYS ARG GLN ARG ARG ILE LYS GLN SEQRES 1 D 273 GLY SER HIS MET GLY GLY VAL GLU VAL LEU ASP THR VAL SEQRES 2 D 273 PRO LEU THR GLU ASP THR GLN TYR LYS VAL GLU ALA VAL SEQRES 3 D 273 LEU LEU PRO ASN PHE GLY LYS ALA ALA THR THR GLY ASN SEQRES 4 D 273 PHE GLN SER ARG GLY LEU PRO TYR THR MET SER ASP THR SEQRES 5 D 273 LEU GLY PRO GLY ALA ALA LEU CYS TYR SER VAL ALA VAL SEQRES 6 D 273 ILE ASN LEU PRO GLU ILE PRO ASP ALA MET CYS GLU ASP SEQRES 7 D 273 THR MET ILE VAL TRP GLU ALA TYR ARG LEU GLU THR GLU SEQRES 8 D 273 LEU LEU PHE ALA PRO GLN MET ALA SER SER GLY TYR GLN SEQRES 9 D 273 ARG ALA ASN GLY THR LEU ALA GLY ILE GLU GLY THR GLN SEQRES 10 D 273 LEU TYR PHE TRP ALA CYS GLY GLY GLY PRO LEU ASP VAL SEQRES 11 D 273 ILE GLY ILE ASN PRO ASP PRO GLU ARG LEU LYS VAL ASN SEQRES 12 D 273 GLU ALA LEU GLU GLY PRO GLY ASN SER ASP VAL ALA SER SEQRES 13 D 273 LEU GLN ALA LEU ARG LYS GLN VAL ASN ALA ALA ASN PHE SEQRES 14 D 273 PRO VAL GLU LEU TRP VAL ALA ASP PRO THR LYS ASN ASP SEQRES 15 D 273 ASN THR ARG TYR PHE GLY ARG VAL VAL GLY GLY GLY VAL SEQRES 16 D 273 THR PRO PRO VAL VAL SER TYR GLY ASN GLN SER THR THR SEQRES 17 D 273 PRO LEU ILE ASP GLU ASN GLY VAL GLY ILE LEU CYS THR SEQRES 18 D 273 PHE GLY SER VAL TYR LEU THR SER ALA ASP MET VAL GLY SEQRES 19 D 273 MET THR GLY LEU PRO GLY LEU PRO THR LEU SER ALA ASP SEQRES 20 D 273 TYR SER ASN GLN ARG THR VAL GLN ALA GLY TYR GLY ARG SEQRES 21 D 273 PHE PHE ARG VAL HIS CYS ARG GLN ARG ARG ILE LYS GLN SEQRES 1 E 273 GLY SER HIS MET GLY GLY VAL GLU VAL LEU ASP THR VAL SEQRES 2 E 273 PRO LEU THR GLU ASP THR GLN TYR LYS VAL GLU ALA VAL SEQRES 3 E 273 LEU LEU PRO ASN PHE GLY LYS ALA ALA THR THR GLY ASN SEQRES 4 E 273 PHE GLN SER ARG GLY LEU PRO TYR THR MET SER ASP THR SEQRES 5 E 273 LEU GLY PRO GLY ALA ALA LEU CYS TYR SER VAL ALA VAL SEQRES 6 E 273 ILE ASN LEU PRO GLU ILE PRO ASP ALA MET CYS GLU ASP SEQRES 7 E 273 THR MET ILE VAL TRP GLU ALA TYR ARG LEU GLU THR GLU SEQRES 8 E 273 LEU LEU PHE ALA PRO GLN MET ALA SER SER GLY TYR GLN SEQRES 9 E 273 ARG ALA ASN GLY THR LEU ALA GLY ILE GLU GLY THR GLN SEQRES 10 E 273 LEU TYR PHE TRP ALA CYS GLY GLY GLY PRO LEU ASP VAL SEQRES 11 E 273 ILE GLY ILE ASN PRO ASP PRO GLU ARG LEU LYS VAL ASN SEQRES 12 E 273 GLU ALA LEU GLU GLY PRO GLY ASN SER ASP VAL ALA SER SEQRES 13 E 273 LEU GLN ALA LEU ARG LYS GLN VAL ASN ALA ALA ASN PHE SEQRES 14 E 273 PRO VAL GLU LEU TRP VAL ALA ASP PRO THR LYS ASN ASP SEQRES 15 E 273 ASN THR ARG TYR PHE GLY ARG VAL VAL GLY GLY GLY VAL SEQRES 16 E 273 THR PRO PRO VAL VAL SER TYR GLY ASN GLN SER THR THR SEQRES 17 E 273 PRO LEU ILE ASP GLU ASN GLY VAL GLY ILE LEU CYS THR SEQRES 18 E 273 PHE GLY SER VAL TYR LEU THR SER ALA ASP MET VAL GLY SEQRES 19 E 273 MET THR GLY LEU PRO GLY LEU PRO THR LEU SER ALA ASP SEQRES 20 E 273 TYR SER ASN GLN ARG THR VAL GLN ALA GLY TYR GLY ARG SEQRES 21 E 273 PHE PHE ARG VAL HIS CYS ARG GLN ARG ARG ILE LYS GLN HET GOL A 301 6 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HET GOL C 301 6 HET GOL D 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 6 GOL 6(C3 H8 O3) FORMUL 12 HOH *990(H2 O) HELIX 1 AA1 MET A 113 SER A 116 5 4 HELIX 2 AA2 ARG A 120 GLY A 123 5 4 HELIX 3 AA3 SER A 260 ARG A 267 5 8 HELIX 4 AA4 MET B 113 SER B 116 5 4 HELIX 5 AA5 ARG B 120 GLY B 123 5 4 HELIX 6 AA6 SER B 260 GLN B 266 5 7 HELIX 7 AA7 THR C 31 ASP C 33 5 3 HELIX 8 AA8 MET C 113 SER C 116 5 4 HELIX 9 AA9 ARG C 120 GLY C 123 5 4 HELIX 10 AB1 SER C 260 GLN C 266 5 7 HELIX 11 AB2 MET D 113 SER D 116 5 4 HELIX 12 AB3 ARG D 120 GLY D 123 5 4 HELIX 13 AB4 SER D 260 ARG D 267 5 8 HELIX 14 AB5 MET E 113 SER E 116 5 4 HELIX 15 AB6 ARG E 120 GLY E 123 5 4 HELIX 16 AB7 SER E 260 GLN E 266 5 7 SITE 1 AC1 6 GLN A 119 HOH A 521 HOH A 525 HOH A 530 SITE 2 AC1 6 HOH A 566 HOH E 321 SITE 1 AC2 8 ASP B 197 ASN B 198 ARG B 200 ASP B 227 SITE 2 AC2 8 VAL B 231 GLY B 232 HOH B 640 HOH B 645 SITE 1 AC3 6 ASN A 122 GLN B 119 VAL B 210 HOH B 478 SITE 2 AC3 6 HOH B 567 HOH B 585 SITE 1 AC4 7 ASN B 122 HOH B 482 HOH B 564 GLN C 119 SITE 2 AC4 7 ASN C 122 VAL C 210 HOH C 566 SITE 1 AC5 6 ASN C 122 HOH C 482 HOH C 569 GLN D 119 SITE 2 AC5 6 LEU D 259 HOH D 426 SITE 1 AC6 7 ASN D 122 HOH D 408 HOH D 432 HOH D 495 SITE 2 AC6 7 HOH D 513 GLN E 119 LEU E 259 CRYST1 209.670 86.430 84.210 90.00 92.14 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004769 0.000000 0.000178 0.00000 SCALE2 0.000000 0.011570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011883 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.565348 0.755805 0.330364 -33.64162 1 MTRIX2 2 -0.748955 0.302543 0.589521 15.69523 1 MTRIX3 2 0.345614 -0.580711 0.737106 26.20976 1 MTRIX1 3 -0.136302 0.481113 0.865997 -33.06760 1 MTRIX2 3 -0.457655 -0.805866 0.375675 60.41684 1 MTRIX3 3 0.878621 -0.345122 0.330025 24.77825 1 MTRIX1 4 -0.132149 -0.456880 0.879657 1.48277 1 MTRIX2 4 0.472659 -0.809096 -0.349225 72.87045 1 MTRIX3 4 0.871281 0.369628 0.322870 -1.77821 1 MTRIX1 5 0.563690 -0.754790 0.335478 21.68456 1 MTRIX2 5 0.756654 0.308982 -0.576199 35.73824 1 MTRIX3 5 0.331252 0.578639 0.745285 -16.53294 1