PDB Short entry for 4PDG HEADER HYDROLASE/DNA 18-APR-14 4PDG TITLE CRYSTAL STRUCTURE OF A COMPLEX BETWEEN AN INHIBITED LLFPG AND A THF TITLE 2 CONTAINING DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAPY-DNA GLYCOSYLASE,DNA-(APURINIC OR APYRIMIDINIC SITE) COMPND 5 LYASE MUTM,AP LYASE MUTM; COMPND 6 EC: 3.2.2.23; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; SOURCE 3 ORGANISM_TAXID: 1359; SOURCE 4 GENE: MUTM, FPG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS DNA GLYCOSYLASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.COSTE,B.CASTAING REVDAT 2 27-SEP-23 4PDG 1 SOURCE JRNL REMARK REVDAT 1 01-APR-15 4PDG 0 JRNL AUTH A.BIELA,F.COSTE,F.CULARD,M.GUERIN,S.GOFFINONT,K.GASTEIGER, JRNL AUTH 2 J.CIESLA,A.WINCZURA,Z.KAZIMIERCZUK,D.GASPARUTTO,T.CARELL, JRNL AUTH 3 B.TUDEK,B.CASTAING JRNL TITL ZINC FINGER OXIDATION OF FPG/NEI DNA GLYCOSYLASES BY JRNL TITL 2 2-THIOXANTHINE: BIOCHEMICAL AND X-RAY STRUCTURAL JRNL TITL 3 CHARACTERIZATION. JRNL REF NUCLEIC ACIDS RES. V. 42 10748 2014 JRNL REFN ESSN 1362-4962 JRNL PMID 25143530 JRNL DOI 10.1093/NAR/GKU613 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 43014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0663 - 6.0366 0.96 2466 139 0.1755 0.1848 REMARK 3 2 6.0366 - 4.7935 0.98 2541 116 0.1463 0.1721 REMARK 3 3 4.7935 - 4.1881 0.98 2553 120 0.1130 0.1335 REMARK 3 4 4.1881 - 3.8054 0.98 2525 153 0.1252 0.1671 REMARK 3 5 3.8054 - 3.5328 0.99 2573 116 0.1295 0.1665 REMARK 3 6 3.5328 - 3.3246 0.99 2518 154 0.1268 0.1752 REMARK 3 7 3.3246 - 3.1582 1.00 2601 128 0.1554 0.1961 REMARK 3 8 3.1582 - 3.0207 1.00 2521 140 0.1722 0.1891 REMARK 3 9 3.0207 - 2.9045 1.00 2577 143 0.1950 0.2291 REMARK 3 10 2.9045 - 2.8043 1.00 2607 116 0.2069 0.2055 REMARK 3 11 2.8043 - 2.7166 1.00 2565 141 0.2121 0.2447 REMARK 3 12 2.7166 - 2.6390 1.00 2547 148 0.2280 0.2442 REMARK 3 13 2.6390 - 2.5695 0.99 2536 158 0.2451 0.2515 REMARK 3 14 2.5695 - 2.5068 1.00 2519 165 0.2660 0.2750 REMARK 3 15 2.5068 - 2.4498 1.00 2576 131 0.2732 0.3178 REMARK 3 16 2.4498 - 2.4000 0.99 2581 140 0.2860 0.3480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2780 REMARK 3 ANGLE : 1.281 3856 REMARK 3 CHIRALITY : 0.054 434 REMARK 3 PLANARITY : 0.006 391 REMARK 3 DIHEDRAL : 19.950 1088 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7369 102.5461 20.6708 REMARK 3 T TENSOR REMARK 3 T11: 0.3146 T22: 0.2875 REMARK 3 T33: 0.2734 T12: 0.0484 REMARK 3 T13: 0.0058 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 3.5509 L22: 3.9171 REMARK 3 L33: 2.9864 L12: -0.5206 REMARK 3 L13: -1.0385 L23: 1.8154 REMARK 3 S TENSOR REMARK 3 S11: 0.1625 S12: 0.1539 S13: 0.0647 REMARK 3 S21: -0.1099 S22: -0.2740 S23: 0.3268 REMARK 3 S31: -0.2465 S32: -0.4122 S33: 0.1220 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0659 96.2844 32.4553 REMARK 3 T TENSOR REMARK 3 T11: 0.4178 T22: 0.3021 REMARK 3 T33: 0.3028 T12: 0.0299 REMARK 3 T13: 0.0355 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 6.5415 L22: 1.5990 REMARK 3 L33: 3.5200 L12: -0.6407 REMARK 3 L13: -2.8316 L23: 1.3401 REMARK 3 S TENSOR REMARK 3 S11: -0.0779 S12: -0.7460 S13: -0.1794 REMARK 3 S21: 0.2843 S22: 0.1010 S23: 0.1848 REMARK 3 S31: 0.2297 S32: 0.1424 S33: 0.0457 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0123 100.2022 17.4426 REMARK 3 T TENSOR REMARK 3 T11: 0.3074 T22: 0.2214 REMARK 3 T33: 0.2939 T12: 0.0283 REMARK 3 T13: -0.0287 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.5398 L22: 2.0085 REMARK 3 L33: 2.5514 L12: -0.7115 REMARK 3 L13: -0.6756 L23: 0.7939 REMARK 3 S TENSOR REMARK 3 S11: 0.1021 S12: 0.0860 S13: -0.0500 REMARK 3 S21: -0.2135 S22: -0.1603 S23: 0.1798 REMARK 3 S31: -0.2378 S32: -0.2620 S33: 0.0468 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2033 87.2888 0.6531 REMARK 3 T TENSOR REMARK 3 T11: 0.3816 T22: 0.3604 REMARK 3 T33: 0.3435 T12: 0.0629 REMARK 3 T13: 0.0527 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 7.5880 L22: 5.5424 REMARK 3 L33: 3.7276 L12: -1.7407 REMARK 3 L13: 4.9887 L23: -2.5482 REMARK 3 S TENSOR REMARK 3 S11: 0.2585 S12: 0.9977 S13: 0.2708 REMARK 3 S21: -0.4222 S22: -0.3169 S23: -0.1125 REMARK 3 S31: 0.3548 S32: 0.4133 S33: 0.0547 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2085 80.9239 6.6649 REMARK 3 T TENSOR REMARK 3 T11: 0.4824 T22: 0.2648 REMARK 3 T33: 0.3654 T12: 0.0218 REMARK 3 T13: -0.0582 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 4.0332 L22: 4.0803 REMARK 3 L33: 4.3696 L12: -2.0071 REMARK 3 L13: -1.4028 L23: 0.4131 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: 0.1981 S13: -0.4266 REMARK 3 S21: -0.3301 S22: -0.1891 S23: 0.0823 REMARK 3 S31: 0.5466 S32: 0.0003 S33: 0.1218 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2797 74.8723 20.7108 REMARK 3 T TENSOR REMARK 3 T11: 0.7742 T22: 0.4482 REMARK 3 T33: 0.5471 T12: -0.0573 REMARK 3 T13: 0.0804 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 8.2198 L22: 8.5676 REMARK 3 L33: 0.0275 L12: -6.4095 REMARK 3 L13: 0.2786 L23: -0.5789 REMARK 3 S TENSOR REMARK 3 S11: -0.5839 S12: -0.2413 S13: -1.1484 REMARK 3 S21: 0.8222 S22: 0.2627 S23: 1.1573 REMARK 3 S31: 0.6221 S32: -0.1846 S33: 0.3432 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4009 75.0167 15.1313 REMARK 3 T TENSOR REMARK 3 T11: 0.4923 T22: 0.3355 REMARK 3 T33: 0.4103 T12: 0.1060 REMARK 3 T13: -0.0135 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.6617 L22: 9.8229 REMARK 3 L33: 2.6952 L12: 0.1664 REMARK 3 L13: -0.5467 L23: -1.9391 REMARK 3 S TENSOR REMARK 3 S11: 0.1477 S12: 0.1057 S13: -0.1074 REMARK 3 S21: -0.3649 S22: -0.3472 S23: -0.3838 REMARK 3 S31: 0.5468 S32: 0.2936 S33: 0.2265 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1447 93.5170 23.7699 REMARK 3 T TENSOR REMARK 3 T11: 0.5184 T22: 0.5349 REMARK 3 T33: 0.5196 T12: -0.0228 REMARK 3 T13: -0.0762 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.8655 L22: 4.3134 REMARK 3 L33: 5.4963 L12: 0.0782 REMARK 3 L13: 0.2439 L23: -1.2960 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: 0.1806 S13: 0.4279 REMARK 3 S21: 0.4792 S22: -0.0927 S23: -0.8363 REMARK 3 S31: -0.2410 S32: 1.1764 S33: 0.1828 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2010 95.7052 15.4526 REMARK 3 T TENSOR REMARK 3 T11: 0.5865 T22: 0.8680 REMARK 3 T33: 0.7095 T12: 0.0105 REMARK 3 T13: 0.1322 T23: 0.2480 REMARK 3 L TENSOR REMARK 3 L11: 6.1792 L22: 8.3293 REMARK 3 L33: 6.9171 L12: 0.3530 REMARK 3 L13: -6.4907 L23: -0.5776 REMARK 3 S TENSOR REMARK 3 S11: -0.7494 S12: 0.4116 S13: 0.5994 REMARK 3 S21: -0.2838 S22: 0.2860 S23: -0.7633 REMARK 3 S31: 1.8634 S32: 0.8929 S33: 0.8507 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 23 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7144 88.8407 35.3849 REMARK 3 T TENSOR REMARK 3 T11: 0.6863 T22: 0.5706 REMARK 3 T33: 0.7090 T12: 0.0651 REMARK 3 T13: -0.2090 T23: 0.1157 REMARK 3 L TENSOR REMARK 3 L11: 3.7921 L22: 9.1850 REMARK 3 L33: 2.7721 L12: -5.3990 REMARK 3 L13: 1.0233 L23: -3.2328 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: -0.7845 S13: -1.3321 REMARK 3 S21: 1.4899 S22: 0.0188 S23: 0.1955 REMARK 3 S31: -0.0321 S32: 0.4214 S33: 0.1276 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1PM5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, SODIUM CITRATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.67650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.27500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.83825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.27500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.51475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.27500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.83825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.27500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.51475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.67650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 219 REMARK 465 ARG A 220 REMARK 465 THR A 221 REMARK 465 TYR A 222 REMARK 465 SER A 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LYS A 15 CD CE NZ REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 LYS A 42 CD CE NZ REMARK 470 LYS A 47 CD CE NZ REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 130 CD CE NZ REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 213 CD CE NZ REMARK 470 LYS A 230 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 -122.59 49.66 REMARK 500 ASP A 107 102.10 -165.73 REMARK 500 GLN A 163 -0.07 77.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PCZ RELATED DB: PDB REMARK 900 RELATED ID: 4PD2 RELATED DB: PDB REMARK 900 RELATED ID: 4PDI RELATED DB: PDB DBREF 4PDG A 1 271 UNP P42371 FPG_LACLC 2 273 DBREF 4PDG B 1 14 PDB 4PDG 4PDG 1 14 DBREF 4PDG C 15 28 PDB 4PDG 4PDG 15 28 SEQADV 4PDG A UNP P42371 ASP 139 DELETION SEQRES 1 A 271 PRO GLU LEU PRO GLU VAL GLU THR VAL ARG ARG GLU LEU SEQRES 2 A 271 GLU LYS ARG ILE VAL GLY GLN LYS ILE ILE SER ILE GLU SEQRES 3 A 271 ALA THR TYR PRO ARG MET VAL LEU THR GLY PHE GLU GLN SEQRES 4 A 271 LEU LYS LYS GLU LEU THR GLY LYS THR ILE GLN GLY ILE SEQRES 5 A 271 SER ARG ARG GLY LYS TYR LEU ILE PHE GLU ILE GLY ASP SEQRES 6 A 271 ASP PHE ARG LEU ILE SER HIS LEU ARG MET GLU GLY LYS SEQRES 7 A 271 TYR ARG LEU ALA THR LEU ASP ALA PRO ARG GLU LYS HIS SEQRES 8 A 271 ASP HIS LEU THR MET LYS PHE ALA ASP GLY GLN LEU ILE SEQRES 9 A 271 TYR ALA ASP VAL ARG LYS PHE GLY THR TRP GLU LEU ILE SEQRES 10 A 271 SER THR ASP GLN VAL LEU PRO TYR PHE LEU LYS LYS LYS SEQRES 11 A 271 ILE GLY PRO GLU PRO THR TYR GLU ASP PHE ASP GLU LYS SEQRES 12 A 271 LEU PHE ARG GLU LYS LEU ARG LYS SER THR LYS LYS ILE SEQRES 13 A 271 LYS PRO TYR LEU LEU GLU GLN THR LEU VAL ALA GLY LEU SEQRES 14 A 271 GLY ASN ILE TYR VAL ASP GLU VAL LEU TRP LEU ALA LYS SEQRES 15 A 271 ILE HIS PRO GLU LYS GLU THR ASN GLN LEU ILE GLU SER SEQRES 16 A 271 SER ILE HIS LEU LEU HIS ASP SER ILE ILE GLU ILE LEU SEQRES 17 A 271 GLN LYS ALA ILE LYS LEU GLY GLY SER SER ILE ARG THR SEQRES 18 A 271 TYR SER ALA LEU GLY SER THR GLY LYS MET GLN ASN GLU SEQRES 19 A 271 LEU GLN VAL TYR GLY LYS THR GLY GLU LYS CYS SER ARG SEQRES 20 A 271 CYS GLY ALA GLU ILE GLN LYS ILE LYS VAL ALA GLY ARG SEQRES 21 A 271 GLY THR HIS PHE CYS PRO VAL CYS GLN GLN LYS SEQRES 1 B 14 DC DT DC DT DT DT 3DR DT DT DT DC DT DC SEQRES 2 B 14 DG SEQRES 1 C 14 DG DC DG DA DG DA DA DA DC DA DA DA DG SEQRES 2 C 14 DA HET 3DR B 7 11 HET 2ON A 301 11 HET GOL A 302 6 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM 2ON 2-SULFANYL-1,9-DIHYDRO-6H-PURIN-6-ONE HETNAM GOL GLYCEROL HETSYN 3DR ABASIC DIDEOXYRIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 3DR C5 H11 O6 P FORMUL 4 2ON C5 H4 N4 O S FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *58(H2 O) HELIX 1 AA1 GLU A 2 VAL A 18 1 17 HELIX 2 AA2 TYR A 29 VAL A 33 5 5 HELIX 3 AA3 GLY A 36 THR A 45 1 10 HELIX 4 AA4 GLN A 121 LYS A 129 1 9 HELIX 5 AA5 ASP A 141 LYS A 151 1 11 HELIX 6 AA6 LYS A 155 GLU A 162 1 8 HELIX 7 AA7 GLY A 170 ALA A 181 1 12 HELIX 8 AA8 GLU A 188 LEU A 192 5 5 HELIX 9 AA9 ILE A 193 LEU A 214 1 22 HELIX 10 AB1 LYS A 230 GLU A 234 5 5 SHEET 1 AA1 4 SER A 24 ALA A 27 0 SHEET 2 AA1 4 ASP A 92 LYS A 97 -1 O THR A 95 N GLU A 26 SHEET 3 AA1 4 GLN A 102 ALA A 106 -1 O TYR A 105 N HIS A 93 SHEET 4 AA1 4 LYS A 78 ALA A 82 -1 N ALA A 82 O GLN A 102 SHEET 1 AA2 4 ILE A 49 ARG A 55 0 SHEET 2 AA2 4 TYR A 58 ILE A 63 -1 O GLU A 62 N GLN A 50 SHEET 3 AA2 4 PHE A 67 HIS A 72 -1 O LEU A 69 N PHE A 61 SHEET 4 AA2 4 THR A 113 SER A 118 -1 O ILE A 117 N ARG A 68 SHEET 1 AA3 2 GLN A 253 VAL A 257 0 SHEET 2 AA3 2 ARG A 260 PHE A 264 -1 O PHE A 264 N GLN A 253 SSBOND 1 CYS A 245 CYS A 265 1555 1555 2.02 SSBOND 2 CYS A 248 2ON A 301 1555 1555 2.00 LINK O3' DT B 6 P 3DR B 7 1555 1555 1.59 LINK O3' 3DR B 7 P DT B 8 1555 1555 1.60 CRYST1 90.550 90.550 139.353 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007176 0.00000