PDB Short entry for 4PH8 HEADER CELL ADHESION 05-MAY-14 4PH8 TITLE CRYSTAL STRUCTURE OF AGGA, THE MAJOR SUBUNIT OF AGGREGATIVE ADHERENCE TITLE 2 FIMBRIAE TYPE I (AAF/I) FROM THE ESCHERICHIA COLI O4H104 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGREGATIVE ADHERENCE FIMBRIAL SUBUNIT AGGA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 41-167; COMPND 5 SYNONYM: AGGREGATIVE ADHERENCE FIMBRIAE, TYPE I (AAF/I), MAJOR COMPND 6 SUBUNIT, AGGA, SHIGA-TOXIN PRODUCING E.COLI; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O104:H4 STR. C227-11; SOURCE 3 ORGANISM_TAXID: 1048254; SOURCE 4 GENE: EUAG_05069; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET101D KEYWDS CELL ADHESION, BETA SANDWICH, DONOR-STRAND COMPLEMENTATION, KEYWDS 2 FIBRONECTIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.A.PAKHARUKOVA,M.TUITILLA,A.V.ZAVIALOV REVDAT 3 11-FEB-15 4PH8 1 REVDAT 2 10-DEC-14 4PH8 1 REVDAT 1 01-OCT-14 4PH8 0 JRNL AUTH A.A.BERRY,Y.YANG,N.PAKHARUKOVA,J.A.GARNETT,W.C.LEE,E.COTA, JRNL AUTH 2 J.MARCHANT,S.ROY,M.TUITTILA,B.LIU,K.G.INMAN,F.RUIZ-PEREZ, JRNL AUTH 3 I.MANDOMANDO,J.P.NATARO,A.V.ZAVIALOV,S.MATTHEWS JRNL TITL STRUCTURAL INSIGHT INTO HOST RECOGNITION BY AGGREGATIVE JRNL TITL 2 ADHERENCE FIMBRIAE OF ENTEROAGGREGATIVE ESCHERICHIA COLI. JRNL REF PLOS PATHOG. V. 10 04404 2014 JRNL REFN ESSN 1553-7374 JRNL PMID 25232738 JRNL DOI 10.1371/JOURNAL.PPAT.1004404 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.PAKHARUKOVA,M.TUITTILA,A.ZAVIALOV REMARK 1 TITL CRYSTALLIZATION AND SULFUR SAD PHASING OF AGGA, THE MAJOR REMARK 1 TITL 2 SUBUNIT OF AGGREGATIVE ADHERENCE FIMBRIAE TYPE I FROM THE REMARK 1 TITL 3 ESCHERICHIA COLI STRAIN THAT CAUSED AN OUTBREAK OF REMARK 1 TITL 4 HAEMOLYTIC-URAEMIC SYNDROME IN GERMANY. REMARK 1 REF ACTA CRYSTALLOGR. SECT. F V. 69 1389 2013 REMARK 1 REF 2 STRUCT. BIOL. CRYST. COMMUN. REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 24316837 REMARK 1 DOI 10.1107/S1744309113029990 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 37875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1854 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2242 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.706 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2308 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2209 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3155 ; 1.344 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5096 ; 0.731 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.657 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;43.882 ;25.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;12.750 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;18.754 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2607 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 493 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1200 ; 3.050 ; 2.220 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1199 ; 3.053 ; 2.218 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1497 ; 3.876 ; 3.333 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4513 ; 1.917 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 100 ;36.272 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4662 ;14.404 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4PH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-12; 11-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : BM14; BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954; 1.75 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40475 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 91.416 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : 0.78700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SINGLE CRYSTAL, DIMENSIONS 0.6 MM X 0.2 MM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 0.1M SODIUM REMARK 280 CACODYLATE, 30% W/V PEG 8000, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.70800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.70800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.91600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.08600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.91600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.08600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.70800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.91600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.08600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.70800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.91600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.08600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A FIMBRIAE MADE OF POLYMERISED OF AGGA REMARK 300 SUBUNITS, AND ON THE TIP OF THE FIMBRIAE MINOR SUBUNIT (AGGB) IS REMARK 300 LOCATED. ASSYMMETRIC UNIT CONSISTS OF TWO AGGA SUBUNITS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 7 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLN A 140 CD OE1 NE2 REMARK 470 GLN B 119 CG CD OE1 NE2 REMARK 470 GLN B 140 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N HIS B 7 O HOH B 301 2.12 REMARK 500 NE2 GLN B 145 O HOH B 302 2.18 REMARK 500 NH2 ARG A 152 O1 GOL A 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 105 78.58 -152.81 REMARK 500 ASN A 138 -164.50 -118.78 REMARK 500 GLN B 91 9.98 59.66 REMARK 500 ASN B 105 80.80 -158.03 REMARK 500 VAL B 120 71.22 64.40 REMARK 500 ASN B 138 -160.08 -123.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OR1 RELATED DB: PDB DBREF 4PH8 A 10 136 UNP G5TBZ9 G5TBZ9_ECOLX 41 167 DBREF 4PH8 B 10 136 UNP G5TBZ9 G5TBZ9_ECOLX 41 167 SEQADV 4PH8 ALA A 1 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 SER A 2 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLN A 3 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS A 4 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS A 5 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS A 6 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS A 7 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS A 8 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS A 9 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ASP A 137 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ASN A 138 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 LYS A 139 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLN A 140 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLY A 141 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLY A 142 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ALA A 143 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 SER A 144 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLN A 145 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLN A 146 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 THR A 147 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 THR A 148 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLN A 149 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 THR A 150 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ILE A 151 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ARG A 152 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 LEU A 153 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 THR A 154 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 VAL A 155 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 THR A 156 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ALA B 1 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 SER B 2 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLN B 3 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS B 4 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS B 5 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS B 6 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS B 7 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS B 8 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 HIS B 9 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ASP B 137 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ASN B 138 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 LYS B 139 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLN B 140 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLY B 141 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLY B 142 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ALA B 143 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 SER B 144 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLN B 145 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLN B 146 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 THR B 147 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 THR B 148 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 GLN B 149 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 THR B 150 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ILE B 151 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 ARG B 152 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 LEU B 153 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 THR B 154 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 VAL B 155 UNP G5TBZ9 EXPRESSION TAG SEQADV 4PH8 THR B 156 UNP G5TBZ9 EXPRESSION TAG SEQRES 1 A 156 ALA SER GLN HIS HIS HIS HIS HIS HIS VAL THR ASN ASP SEQRES 2 A 156 CYS PRO VAL THR ILE THR THR THR PRO PRO GLN THR VAL SEQRES 3 A 156 GLY VAL SER SER THR THR PRO ILE GLY PHE SER ALA LYS SEQRES 4 A 156 VAL THR THR SER ASP GLN CYS ILE LYS ALA GLY ALA LYS SEQRES 5 A 156 VAL TRP LEU TRP GLY THR GLY PRO ALA ASN LYS TRP VAL SEQRES 6 A 156 LEU GLN HIS ALA LYS VAL ALA LYS GLN LYS TYR THR LEU SEQRES 7 A 156 ASN PRO SER ILE ASP GLY GLY ALA ASP PHE VAL ASN GLN SEQRES 8 A 156 GLY THR ASP ALA LYS ILE TYR LYS LYS LEU THR SER GLY SEQRES 9 A 156 ASN LYS PHE LEU ASN ALA SER VAL SER VAL ASN PRO LYS SEQRES 10 A 156 THR GLN VAL LEU ILE PRO GLY GLU TYR THR MET ILE LEU SEQRES 11 A 156 HIS ALA ALA VAL ASP PHE ASP ASN LYS GLN GLY GLY ALA SEQRES 12 A 156 SER GLN GLN THR THR GLN THR ILE ARG LEU THR VAL THR SEQRES 1 B 156 ALA SER GLN HIS HIS HIS HIS HIS HIS VAL THR ASN ASP SEQRES 2 B 156 CYS PRO VAL THR ILE THR THR THR PRO PRO GLN THR VAL SEQRES 3 B 156 GLY VAL SER SER THR THR PRO ILE GLY PHE SER ALA LYS SEQRES 4 B 156 VAL THR THR SER ASP GLN CYS ILE LYS ALA GLY ALA LYS SEQRES 5 B 156 VAL TRP LEU TRP GLY THR GLY PRO ALA ASN LYS TRP VAL SEQRES 6 B 156 LEU GLN HIS ALA LYS VAL ALA LYS GLN LYS TYR THR LEU SEQRES 7 B 156 ASN PRO SER ILE ASP GLY GLY ALA ASP PHE VAL ASN GLN SEQRES 8 B 156 GLY THR ASP ALA LYS ILE TYR LYS LYS LEU THR SER GLY SEQRES 9 B 156 ASN LYS PHE LEU ASN ALA SER VAL SER VAL ASN PRO LYS SEQRES 10 B 156 THR GLN VAL LEU ILE PRO GLY GLU TYR THR MET ILE LEU SEQRES 11 B 156 HIS ALA ALA VAL ASP PHE ASP ASN LYS GLN GLY GLY ALA SEQRES 12 B 156 SER GLN GLN THR THR GLN THR ILE ARG LEU THR VAL THR HET GOL A 201 6 HET GOL B 201 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *295(H2 O) HELIX 1 AA1 SER A 43 GLY A 50 1 8 HELIX 2 AA2 GLY A 59 LYS A 63 5 5 HELIX 3 AA3 ASN A 90 THR A 93 5 4 HELIX 4 AA4 SER B 43 ALA B 49 1 7 HELIX 5 AA5 GLY B 59 LYS B 63 5 5 HELIX 6 AA6 ASN B 90 THR B 93 5 4 HELIX 7 AA7 ASN B 115 VAL B 120 1 6 SHEET 1 AA1 4 THR A 17 THR A 20 0 SHEET 2 AA1 4 ILE A 34 THR A 41 -1 O THR A 41 N THR A 17 SHEET 3 AA1 4 LEU A 108 VAL A 114 -1 O ALA A 110 N ALA A 38 SHEET 4 AA1 4 SER A 81 ILE A 82 -1 N SER A 81 O SER A 111 SHEET 1 AA2 6 GLN A 24 VAL A 26 0 SHEET 2 AA2 6 GLY A 141 VAL A 155 1 O THR A 154 N GLN A 24 SHEET 3 AA2 6 GLY A 124 ASN A 138 -1 N MET A 128 O ILE A 151 SHEET 4 AA2 6 LYS A 52 TRP A 56 -1 N TRP A 56 O HIS A 131 SHEET 5 AA2 6 ILE A 97 LYS A 100 -1 O ILE A 97 N LEU A 55 SHEET 6 AA2 6 ASP A 87 PHE A 88 -1 N ASP A 87 O TYR A 98 SHEET 1 AA3 8 LYS A 75 LEU A 78 0 SHEET 2 AA3 8 TRP A 64 HIS A 68 -1 N TRP A 64 O LEU A 78 SHEET 3 AA3 8 GLY A 124 ASN A 138 -1 O THR A 127 N GLN A 67 SHEET 4 AA3 8 GLY A 141 VAL A 155 -1 O ILE A 151 N MET A 128 SHEET 5 AA3 8 SER B 81 ASP B 83 -1 O ILE B 82 N GLN A 146 SHEET 6 AA3 8 LEU B 108 VAL B 114 -1 O SER B 111 N SER B 81 SHEET 7 AA3 8 ILE B 34 THR B 41 -1 N ILE B 34 O VAL B 114 SHEET 8 AA3 8 THR B 17 THR B 20 -1 N THR B 19 O LYS B 39 SHEET 1 AA4 5 GLN B 24 VAL B 26 0 SHEET 2 AA4 5 GLY B 141 VAL B 155 1 O THR B 154 N GLN B 24 SHEET 3 AA4 5 GLY B 124 ASN B 138 -1 N GLY B 124 O VAL B 155 SHEET 4 AA4 5 TRP B 64 HIS B 68 -1 N GLN B 67 O THR B 127 SHEET 5 AA4 5 LYS B 75 LEU B 78 -1 O LEU B 78 N TRP B 64 SHEET 1 AA5 6 GLN B 24 VAL B 26 0 SHEET 2 AA5 6 GLY B 141 VAL B 155 1 O THR B 154 N GLN B 24 SHEET 3 AA5 6 GLY B 124 ASN B 138 -1 N GLY B 124 O VAL B 155 SHEET 4 AA5 6 LYS B 52 GLY B 57 -1 N TRP B 56 O HIS B 131 SHEET 5 AA5 6 ILE B 97 LYS B 100 -1 O ILE B 97 N LEU B 55 SHEET 6 AA5 6 ASP B 87 PHE B 88 -1 N ASP B 87 O TYR B 98 SSBOND 1 CYS A 14 CYS A 46 1555 1555 2.05 SSBOND 2 CYS B 14 CYS B 46 1555 1555 2.05 SITE 1 AC1 6 ARG A 152 HOH A 322 HOH A 378 HIS B 7 SITE 2 AC1 6 HIS B 8 HOH B 324 SITE 1 AC2 4 TRP B 54 LYS B 96 ASP B 135 HOH B 347 CRYST1 77.832 80.172 91.416 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010939 0.00000