PDB Short entry for 4PIM HEADER TRANSFERASE 09-MAY-14 4PIM TITLE ERGOTHIONEINE-BIOSYNTHETIC METHYLTRANSFERASE EGTD, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE-SPECIFIC METHYLTRANSFERASE EGTD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTIDINE-ALPHA-N-METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.44; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 STRAIN: ATCC 607; SOURCE 5 GENE: EGTD, MSMEG_6247, MSMEI_6086; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19M KEYWDS METHYLTRANSFERASE, ERGOTHIONEINE, HISTIDINE BETAINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VIT,F.P.SEEBECK,W.BLANKENFELDT REVDAT 4 27-DEC-23 4PIM 1 REMARK REVDAT 3 22-NOV-17 4PIM 1 SOURCE REMARK REVDAT 2 07-JAN-15 4PIM 1 JRNL REVDAT 1 03-DEC-14 4PIM 0 JRNL AUTH A.VIT,L.MISSON,W.BLANKENFELDT,F.P.SEEBECK JRNL TITL ERGOTHIONEINE BIOSYNTHETIC METHYLTRANSFERASE EGTD REVEALS JRNL TITL 2 THE STRUCTURAL BASIS OF AROMATIC AMINO ACID BETAINE JRNL TITL 3 BIOSYNTHESIS. JRNL REF CHEMBIOCHEM V. 16 119 2015 JRNL REFN ESSN 1439-7633 JRNL PMID 25404173 JRNL DOI 10.1002/CBIC.201402522 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.VIT,L.MISSON,W.BLANKENFELDT,F.P.SEEBECK REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF THE REMARK 1 TITL 2 ERGOTHIONEINE-BIOSYNTHETIC METHYLTRANSFERASE EGTD REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F 676 2014 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 24817736 REMARK 1 DOI 10.1107/S2053230X1400805X REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 74476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7360 - 5.2479 0.99 2878 158 0.2065 0.1961 REMARK 3 2 5.2479 - 4.1662 0.99 2745 130 0.1339 0.1422 REMARK 3 3 4.1662 - 3.6397 0.99 2731 149 0.1361 0.1812 REMARK 3 4 3.6397 - 3.3070 0.98 2699 133 0.1456 0.1672 REMARK 3 5 3.3070 - 3.0700 0.98 2685 130 0.1490 0.1949 REMARK 3 6 3.0700 - 2.8891 0.98 2623 152 0.1538 0.1887 REMARK 3 7 2.8891 - 2.7444 0.98 2660 138 0.1491 0.1867 REMARK 3 8 2.7444 - 2.6249 0.98 2654 150 0.1537 0.1747 REMARK 3 9 2.6249 - 2.5239 0.98 2592 160 0.1457 0.1945 REMARK 3 10 2.5239 - 2.4368 0.98 2623 130 0.1478 0.1941 REMARK 3 11 2.4368 - 2.3606 0.97 2612 147 0.1448 0.1704 REMARK 3 12 2.3606 - 2.2931 0.97 2598 152 0.1382 0.1987 REMARK 3 13 2.2931 - 2.2328 0.97 2605 141 0.1423 0.1723 REMARK 3 14 2.2328 - 2.1783 0.97 2611 118 0.1470 0.1978 REMARK 3 15 2.1783 - 2.1288 0.97 2605 146 0.1487 0.1789 REMARK 3 16 2.1288 - 2.0835 0.97 2553 159 0.1513 0.1749 REMARK 3 17 2.0835 - 2.0418 0.97 2601 127 0.1504 0.1747 REMARK 3 18 2.0418 - 2.0033 0.96 2571 134 0.1597 0.1830 REMARK 3 19 2.0033 - 1.9675 0.96 2603 129 0.1676 0.2096 REMARK 3 20 1.9675 - 1.9341 0.96 2557 137 0.1749 0.2422 REMARK 3 21 1.9341 - 1.9029 0.96 2590 134 0.1737 0.2404 REMARK 3 22 1.9029 - 1.8736 0.96 2585 122 0.1828 0.2087 REMARK 3 23 1.8736 - 1.8461 0.96 2537 133 0.1865 0.2050 REMARK 3 24 1.8461 - 1.8201 0.96 2589 131 0.2059 0.2425 REMARK 3 25 1.8201 - 1.7955 0.96 2508 123 0.2134 0.2458 REMARK 3 26 1.7955 - 1.7722 0.96 2585 144 0.2242 0.2695 REMARK 3 27 1.7722 - 1.7500 0.96 2530 139 0.2288 0.2654 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5106 REMARK 3 ANGLE : 1.116 6957 REMARK 3 CHIRALITY : 0.043 800 REMARK 3 PLANARITY : 0.006 920 REMARK 3 DIHEDRAL : 12.106 1854 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8356 13.9656 26.7693 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.2113 REMARK 3 T33: 0.1954 T12: -0.0290 REMARK 3 T13: -0.0354 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.0040 L22: 0.0103 REMARK 3 L33: 0.0147 L12: -0.0075 REMARK 3 L13: -0.0147 L23: 0.0154 REMARK 3 S TENSOR REMARK 3 S11: 0.0560 S12: -0.0854 S13: 0.0312 REMARK 3 S21: 0.0597 S22: -0.0399 S23: -0.0339 REMARK 3 S31: 0.0161 S32: 0.0913 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5388 27.2526 8.5892 REMARK 3 T TENSOR REMARK 3 T11: 0.1797 T22: 0.1889 REMARK 3 T33: 0.1946 T12: 0.0003 REMARK 3 T13: -0.0188 T23: 0.0441 REMARK 3 L TENSOR REMARK 3 L11: 0.0026 L22: 0.0017 REMARK 3 L33: 0.0027 L12: 0.0016 REMARK 3 L13: 0.0005 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.0231 S13: -0.0357 REMARK 3 S21: -0.0038 S22: -0.0025 S23: -0.0036 REMARK 3 S31: -0.0387 S32: 0.0347 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4247 28.7180 20.1177 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.2546 REMARK 3 T33: 0.1491 T12: -0.0381 REMARK 3 T13: -0.0057 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.0100 L22: 0.0102 REMARK 3 L33: 0.0123 L12: -0.0080 REMARK 3 L13: 0.0048 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: 0.0965 S13: 0.0204 REMARK 3 S21: -0.0321 S22: 0.0365 S23: -0.0387 REMARK 3 S31: 0.0568 S32: 0.0585 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2322 16.8622 17.0831 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.0554 REMARK 3 T33: 0.0555 T12: -0.0068 REMARK 3 T13: -0.0145 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.0423 L22: 0.0500 REMARK 3 L33: 0.0681 L12: 0.0217 REMARK 3 L13: -0.0101 L23: -0.0041 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: -0.0305 S13: 0.0040 REMARK 3 S21: 0.0242 S22: 0.0143 S23: 0.0947 REMARK 3 S31: 0.0046 S32: -0.0262 S33: 0.1127 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8926 -5.7259 10.0793 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.1871 REMARK 3 T33: 0.2111 T12: -0.0334 REMARK 3 T13: -0.0255 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.0185 L22: 0.0039 REMARK 3 L33: 0.0325 L12: -0.0076 REMARK 3 L13: 0.0038 L23: 0.0098 REMARK 3 S TENSOR REMARK 3 S11: -0.0763 S12: 0.0059 S13: -0.0197 REMARK 3 S21: -0.1075 S22: 0.0359 S23: -0.0278 REMARK 3 S31: 0.0166 S32: 0.0151 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6873 1.4928 24.9543 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.2022 REMARK 3 T33: 0.1892 T12: 0.0088 REMARK 3 T13: -0.0381 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.0043 L22: 0.0081 REMARK 3 L33: 0.0054 L12: 0.0034 REMARK 3 L13: -0.0037 L23: 0.0011 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.0010 S13: 0.0374 REMARK 3 S21: -0.0269 S22: 0.0260 S23: 0.0344 REMARK 3 S31: -0.0243 S32: 0.0080 S33: 0.0061 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1789 5.2010 13.3818 REMARK 3 T TENSOR REMARK 3 T11: 0.0756 T22: 0.0419 REMARK 3 T33: 0.0199 T12: -0.0211 REMARK 3 T13: -0.0315 T23: 0.0799 REMARK 3 L TENSOR REMARK 3 L11: 0.0249 L22: 0.0419 REMARK 3 L33: 0.0266 L12: -0.0314 REMARK 3 L13: 0.0214 L23: -0.0322 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: -0.0285 S13: 0.0229 REMARK 3 S21: 0.0745 S22: 0.0119 S23: -0.0283 REMARK 3 S31: -0.0200 S32: -0.0128 S33: -0.0209 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2443 -10.7662 15.7953 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.1682 REMARK 3 T33: 0.1822 T12: 0.0065 REMARK 3 T13: -0.0253 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: -0.0000 L22: 0.0061 REMARK 3 L33: 0.0014 L12: -0.0004 REMARK 3 L13: -0.0001 L23: 0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: 0.0105 S13: 0.0250 REMARK 3 S21: -0.0296 S22: -0.0276 S23: -0.0088 REMARK 3 S31: 0.0234 S32: -0.0094 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7459 -12.2632 20.6229 REMARK 3 T TENSOR REMARK 3 T11: 0.0029 T22: 0.0530 REMARK 3 T33: 0.0426 T12: -0.0012 REMARK 3 T13: -0.0749 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.1110 L22: 0.0536 REMARK 3 L33: 0.1567 L12: 0.0115 REMARK 3 L13: -0.0869 L23: -0.0127 REMARK 3 S TENSOR REMARK 3 S11: -0.0875 S12: -0.0258 S13: -0.0578 REMARK 3 S21: -0.0481 S22: 0.0335 S23: 0.0650 REMARK 3 S31: 0.1235 S32: -0.0803 S33: -0.1748 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 41.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 1.26900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% W/V PEG8000, 20% W/V GLYCEROL, REMARK 280 0.08 M MES, PH 6.3, 0.16 M MAGNESIUM ACETATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.90600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.33700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.33700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.90600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 SER B 87 OG REMARK 470 ASP B 141 CG OD1 OD2 REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 48 HG1 THR A 51 1.59 REMARK 500 O HOH A 815 O HOH B 825 2.01 REMARK 500 O HOH B 565 O HOH B 767 2.11 REMARK 500 O HOH B 581 O HOH B 916 2.12 REMARK 500 O HOH B 845 O HOH B 852 2.13 REMARK 500 O HOH B 577 O HOH B 913 2.14 REMARK 500 O HOH A 580 O HOH A 581 2.15 REMARK 500 O HOH A 788 O HOH A 904 2.15 REMARK 500 O HOH A 892 O HOH A 893 2.16 REMARK 500 O HOH B 832 O HOH B 861 2.16 REMARK 500 OE2 GLU A 91 O HOH A 901 2.16 REMARK 500 O HOH B 845 O HOH B 865 2.17 REMARK 500 O HOH A 712 O HOH A 780 2.18 REMARK 500 O HOH B 558 O HOH B 569 2.18 REMARK 500 O HOH B 552 O HOH B 567 2.18 REMARK 500 O HOH A 844 O HOH A 867 2.19 REMARK 500 O HOH B 776 O HOH B 793 2.19 REMARK 500 O HOH A 722 O HOH A 781 2.19 REMARK 500 O HOH B 826 O HOH B 842 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 507 O HOH B 555 1565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 39 58.25 -112.01 REMARK 500 SER A 87 -109.58 94.10 REMARK 500 GLU A 144 -24.17 -140.07 REMARK 500 ASP A 207 58.89 -154.50 REMARK 500 THR A 281 -106.52 -119.83 REMARK 500 TYR B 39 51.64 -101.98 REMARK 500 GLU B 144 -31.53 -131.77 REMARK 500 ASP B 207 62.57 -154.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 869 DISTANCE = 5.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PIN RELATED DB: PDB REMARK 900 EGTD IN COMPLEX WITH N,N-DIMETHYLHISTIDINE REMARK 900 RELATED ID: 4PIO RELATED DB: PDB REMARK 900 EGTD IN COMPLEX WITH N,N-DIMETHYLHISTIDINE AND SAH REMARK 900 RELATED ID: 4PIP RELATED DB: PDB REMARK 900 EGTD DOUBLE MUTANT (M252V,E282A) HYOA IN COMPLEX WITH TRYPTOPHAN REMARK 900 AND SAH DBREF 4PIM A 1 321 UNP A0R5M8 EGTD_MYCS2 1 321 DBREF 4PIM B 1 321 UNP A0R5M8 EGTD_MYCS2 1 321 SEQADV 4PIM GLY A -1 UNP A0R5M8 EXPRESSION TAG SEQADV 4PIM HIS A 0 UNP A0R5M8 EXPRESSION TAG SEQADV 4PIM ALA A 2 UNP A0R5M8 THR 2 ENGINEERED MUTATION SEQADV 4PIM THR A 29 UNP A0R5M8 ALA 29 ENGINEERED MUTATION SEQADV 4PIM GLN A 30 UNP A0R5M8 PRO 30 ENGINEERED MUTATION SEQADV 4PIM SER A 75 UNP A0R5M8 ALA 75 ENGINEERED MUTATION SEQADV 4PIM GLY B -1 UNP A0R5M8 EXPRESSION TAG SEQADV 4PIM HIS B 0 UNP A0R5M8 EXPRESSION TAG SEQADV 4PIM ALA B 2 UNP A0R5M8 THR 2 ENGINEERED MUTATION SEQADV 4PIM THR B 29 UNP A0R5M8 ALA 29 ENGINEERED MUTATION SEQADV 4PIM GLN B 30 UNP A0R5M8 PRO 30 ENGINEERED MUTATION SEQADV 4PIM SER B 75 UNP A0R5M8 ALA 75 ENGINEERED MUTATION SEQRES 1 A 323 GLY HIS MSE ALA LEU SER LEU ALA ASN TYR LEU ALA ALA SEQRES 2 A 323 ASP SER ALA ALA GLU ALA LEU ARG ARG ASP VAL ARG ALA SEQRES 3 A 323 GLY LEU THR ALA THR GLN LYS SER LEU PRO PRO LYS TRP SEQRES 4 A 323 PHE TYR ASP ALA VAL GLY SER ASP LEU PHE ASP GLN ILE SEQRES 5 A 323 THR ARG LEU PRO GLU TYR TYR PRO THR ARG THR GLU ALA SEQRES 6 A 323 GLN ILE LEU ARG THR ARG SER ALA GLU ILE ILE SER ALA SEQRES 7 A 323 ALA GLY ALA ASP THR LEU VAL GLU LEU GLY SER GLY THR SEQRES 8 A 323 SER GLU LYS THR ARG MSE LEU LEU ASP ALA MSE ARG ASP SEQRES 9 A 323 ALA GLU LEU LEU ARG ARG PHE ILE PRO PHE ASP VAL ASP SEQRES 10 A 323 ALA GLY VAL LEU ARG SER ALA GLY ALA ALA ILE GLY ALA SEQRES 11 A 323 GLU TYR PRO GLY ILE GLU ILE ASP ALA VAL CYS GLY ASP SEQRES 12 A 323 PHE GLU GLU HIS LEU GLY LYS ILE PRO HIS VAL GLY ARG SEQRES 13 A 323 ARG LEU VAL VAL PHE LEU GLY SER THR ILE GLY ASN LEU SEQRES 14 A 323 THR PRO ALA PRO ARG ALA GLU PHE LEU SER THR LEU ALA SEQRES 15 A 323 ASP THR LEU GLN PRO GLY ASP SER LEU LEU LEU GLY THR SEQRES 16 A 323 ASP LEU VAL LYS ASP THR GLY ARG LEU VAL ARG ALA TYR SEQRES 17 A 323 ASP ASP ALA ALA GLY VAL THR ALA ALA PHE ASN ARG ASN SEQRES 18 A 323 VAL LEU ALA VAL VAL ASN ARG GLU LEU SER ALA ASP PHE SEQRES 19 A 323 ASP LEU ASP ALA PHE GLU HIS VAL ALA LYS TRP ASN SER SEQRES 20 A 323 ASP GLU GLU ARG ILE GLU MSE TRP LEU ARG ALA ARG THR SEQRES 21 A 323 ALA GLN HIS VAL ARG VAL ALA ALA LEU ASP LEU GLU VAL SEQRES 22 A 323 ASP PHE ALA ALA GLY GLU GLU MSE LEU THR GLU VAL SER SEQRES 23 A 323 CYS LYS PHE ARG PRO GLU ASN VAL VAL ALA GLU LEU ALA SEQRES 24 A 323 GLU ALA GLY LEU ARG GLN THR HIS TRP TRP THR ASP PRO SEQRES 25 A 323 ALA GLY ASP PHE GLY LEU SER LEU ALA VAL ARG SEQRES 1 B 323 GLY HIS MSE ALA LEU SER LEU ALA ASN TYR LEU ALA ALA SEQRES 2 B 323 ASP SER ALA ALA GLU ALA LEU ARG ARG ASP VAL ARG ALA SEQRES 3 B 323 GLY LEU THR ALA THR GLN LYS SER LEU PRO PRO LYS TRP SEQRES 4 B 323 PHE TYR ASP ALA VAL GLY SER ASP LEU PHE ASP GLN ILE SEQRES 5 B 323 THR ARG LEU PRO GLU TYR TYR PRO THR ARG THR GLU ALA SEQRES 6 B 323 GLN ILE LEU ARG THR ARG SER ALA GLU ILE ILE SER ALA SEQRES 7 B 323 ALA GLY ALA ASP THR LEU VAL GLU LEU GLY SER GLY THR SEQRES 8 B 323 SER GLU LYS THR ARG MSE LEU LEU ASP ALA MSE ARG ASP SEQRES 9 B 323 ALA GLU LEU LEU ARG ARG PHE ILE PRO PHE ASP VAL ASP SEQRES 10 B 323 ALA GLY VAL LEU ARG SER ALA GLY ALA ALA ILE GLY ALA SEQRES 11 B 323 GLU TYR PRO GLY ILE GLU ILE ASP ALA VAL CYS GLY ASP SEQRES 12 B 323 PHE GLU GLU HIS LEU GLY LYS ILE PRO HIS VAL GLY ARG SEQRES 13 B 323 ARG LEU VAL VAL PHE LEU GLY SER THR ILE GLY ASN LEU SEQRES 14 B 323 THR PRO ALA PRO ARG ALA GLU PHE LEU SER THR LEU ALA SEQRES 15 B 323 ASP THR LEU GLN PRO GLY ASP SER LEU LEU LEU GLY THR SEQRES 16 B 323 ASP LEU VAL LYS ASP THR GLY ARG LEU VAL ARG ALA TYR SEQRES 17 B 323 ASP ASP ALA ALA GLY VAL THR ALA ALA PHE ASN ARG ASN SEQRES 18 B 323 VAL LEU ALA VAL VAL ASN ARG GLU LEU SER ALA ASP PHE SEQRES 19 B 323 ASP LEU ASP ALA PHE GLU HIS VAL ALA LYS TRP ASN SER SEQRES 20 B 323 ASP GLU GLU ARG ILE GLU MSE TRP LEU ARG ALA ARG THR SEQRES 21 B 323 ALA GLN HIS VAL ARG VAL ALA ALA LEU ASP LEU GLU VAL SEQRES 22 B 323 ASP PHE ALA ALA GLY GLU GLU MSE LEU THR GLU VAL SER SEQRES 23 B 323 CYS LYS PHE ARG PRO GLU ASN VAL VAL ALA GLU LEU ALA SEQRES 24 B 323 GLU ALA GLY LEU ARG GLN THR HIS TRP TRP THR ASP PRO SEQRES 25 B 323 ALA GLY ASP PHE GLY LEU SER LEU ALA VAL ARG MODRES 4PIM MSE A 1 MET MODIFIED RESIDUE MODRES 4PIM MSE A 95 MET MODIFIED RESIDUE MODRES 4PIM MSE A 100 MET MODIFIED RESIDUE MODRES 4PIM MSE A 252 MET MODIFIED RESIDUE MODRES 4PIM MSE A 279 MET MODIFIED RESIDUE MODRES 4PIM MSE B 1 MET MODIFIED RESIDUE MODRES 4PIM MSE B 95 MET MODIFIED RESIDUE MODRES 4PIM MSE B 100 MET MODIFIED RESIDUE MODRES 4PIM MSE B 252 MET MODIFIED RESIDUE MODRES 4PIM MSE B 279 MET MODIFIED RESIDUE HET MSE A 1 17 HET MSE A 95 17 HET MSE A 100 17 HET MSE A 252 17 HET MSE A 279 17 HET MSE B 1 17 HET MSE B 95 17 HET MSE B 100 17 HET MSE B 252 17 HET MSE B 279 17 HET ACT A 401 7 HET ACT B 401 7 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 HOH *834(H2 O) HELIX 1 AA1 ALA A 10 ALA A 28 1 19 HELIX 2 AA2 PRO A 34 PHE A 38 5 5 HELIX 3 AA3 ASP A 40 THR A 51 1 12 HELIX 4 AA4 TYR A 57 GLY A 78 1 22 HELIX 5 AA5 SER A 90 ALA A 103 1 14 HELIX 6 AA6 ASP A 115 TYR A 130 1 16 HELIX 7 AA7 HIS A 145 ILE A 149 5 5 HELIX 8 AA8 SER A 162 LEU A 167 5 6 HELIX 9 AA9 THR A 168 THR A 182 1 15 HELIX 10 AB1 ASP A 198 TYR A 206 1 9 HELIX 11 AB2 GLY A 211 SER A 229 1 19 HELIX 12 AB3 ASP A 233 ASP A 235 5 3 HELIX 13 AB4 ALA A 265 ASP A 268 5 4 HELIX 14 AB5 ARG A 288 ALA A 299 1 12 HELIX 15 AB6 ASP B 12 ALA B 28 1 17 HELIX 16 AB7 PRO B 34 TYR B 39 5 6 HELIX 17 AB8 ASP B 40 THR B 51 1 12 HELIX 18 AB9 TYR B 57 GLY B 78 1 22 HELIX 19 AC1 SER B 90 ALA B 103 1 14 HELIX 20 AC2 ASP B 115 TYR B 130 1 16 HELIX 21 AC3 HIS B 145 ILE B 149 5 5 HELIX 22 AC4 SER B 162 LEU B 167 5 6 HELIX 23 AC5 THR B 168 THR B 182 1 15 HELIX 24 AC6 ASP B 198 TYR B 206 1 9 HELIX 25 AC7 GLY B 211 LEU B 228 1 18 HELIX 26 AC8 ASP B 233 ASP B 235 5 3 HELIX 27 AC9 ALA B 265 ASP B 268 5 4 HELIX 28 AD1 ARG B 288 GLY B 300 1 13 SHEET 1 AA1 8 SER A 4 ASN A 7 0 SHEET 2 AA1 8 GLU A 134 CYS A 139 1 O CYS A 139 N ALA A 6 SHEET 3 AA1 8 ARG A 108 ASP A 113 1 N PHE A 109 O GLU A 134 SHEET 4 AA1 8 THR A 81 LEU A 85 1 N LEU A 82 O ILE A 110 SHEET 5 AA1 8 ARG A 155 PHE A 159 1 O VAL A 158 N VAL A 83 SHEET 6 AA1 8 SER A 188 ASP A 194 1 O SER A 188 N VAL A 157 SHEET 7 AA1 8 PHE A 314 VAL A 320 -1 O GLY A 315 N THR A 193 SHEET 8 AA1 8 ARG A 302 THR A 308 -1 N ARG A 302 O VAL A 320 SHEET 1 AA2 3 PHE A 237 ASN A 244 0 SHEET 2 AA2 3 ARG A 249 ALA A 256 -1 O ARG A 249 N ASN A 244 SHEET 3 AA2 3 GLU A 278 CYS A 285 -1 O THR A 281 N MSE A 252 SHEET 1 AA3 2 GLN A 260 VAL A 264 0 SHEET 2 AA3 2 LEU A 269 PHE A 273 -1 O VAL A 271 N VAL A 262 SHEET 1 AA4 8 SER B 4 ASN B 7 0 SHEET 2 AA4 8 GLU B 134 CYS B 139 1 O CYS B 139 N ALA B 6 SHEET 3 AA4 8 ARG B 108 PHE B 112 1 N PHE B 109 O GLU B 134 SHEET 4 AA4 8 THR B 81 LEU B 85 1 N LEU B 82 O ILE B 110 SHEET 5 AA4 8 ARG B 155 PHE B 159 1 O VAL B 158 N VAL B 83 SHEET 6 AA4 8 SER B 188 ASP B 194 1 O SER B 188 N VAL B 157 SHEET 7 AA4 8 PHE B 314 VAL B 320 -1 O ALA B 319 N LEU B 189 SHEET 8 AA4 8 ARG B 302 THR B 308 -1 N THR B 304 O LEU B 318 SHEET 1 AA5 3 PHE B 237 ASN B 244 0 SHEET 2 AA5 3 ARG B 249 ALA B 256 -1 O TRP B 253 N VAL B 240 SHEET 3 AA5 3 GLU B 278 CYS B 285 -1 O GLU B 282 N MSE B 252 SHEET 1 AA6 2 GLN B 260 VAL B 264 0 SHEET 2 AA6 2 LEU B 269 PHE B 273 -1 O LEU B 269 N VAL B 264 LINK C HIS A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C ARG A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N LEU A 96 1555 1555 1.33 LINK C ALA A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N ARG A 101 1555 1555 1.33 LINK C GLU A 251 N MSE A 252 1555 1555 1.33 LINK C MSE A 252 N TRP A 253 1555 1555 1.33 LINK C GLU A 278 N MSE A 279 1555 1555 1.33 LINK C MSE A 279 N LEU A 280 1555 1555 1.34 LINK C HIS B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ALA B 2 1555 1555 1.34 LINK C ARG B 94 N MSE B 95 1555 1555 1.34 LINK C MSE B 95 N LEU B 96 1555 1555 1.33 LINK C ALA B 99 N MSE B 100 1555 1555 1.32 LINK C MSE B 100 N ARG B 101 1555 1555 1.33 LINK C GLU B 251 N MSE B 252 1555 1555 1.33 LINK C MSE B 252 N TRP B 253 1555 1555 1.33 LINK C GLU B 278 N MSE B 279 1555 1555 1.33 LINK C MSE B 279 N LEU B 280 1555 1555 1.32 SITE 1 AC1 7 TYR A 56 GLY A 161 ASN A 166 TYR A 206 SITE 2 AC1 7 SER A 284 HOH A 640 HOH A 912 SITE 1 AC2 6 TYR B 56 ASN B 166 TYR B 206 SER B 284 SITE 2 AC2 6 HOH B 639 HOH B 819 CRYST1 71.812 75.500 138.674 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007211 0.00000