PDB Short entry for 4PKG HEADER CONTRACTILE PROTEIN/ACTIN-BINDING PROTEI14-MAY-14 4PKG TITLE COMPLEX OF ATP-ACTIN WITH THE N-TERMINAL ACTIN-BINDING DOMAIN OF TITLE 2 TROPOMODULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-ACTIN-1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GELSOLIN,TROPOMODULIN-1 CHIMERA; COMPND 7 CHAIN: G; COMPND 8 FRAGMENT: GELSOLIN (UNP RESIDUES 12-136), GGSGGSGGS LINKER, TMOD1 COMPND 9 ACTIN-BINDING SITE 1 (UNP RESIDUES 50-101); COMPND 10 SYNONYM: AGEL,ACTIN-DEPOLYMERIZING FACTOR,ADF,BREVIN,ERYTHROCYTE COMPND 11 TROPOMODULIN,E-TMOD; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: SKELETAL MUSCLE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: GSN, TMOD1, D9S57E, TMOD; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PTYB11 KEYWDS TMOD, ACTIN FILAMENT, POINTED-END CAPPING PROTEIN, TROPOMYOSIN, KEYWDS 2 CONTRACTILE PROTEIN, ACTIN-BINDING PROTEIN, CONTRACTILE PROTEIN- KEYWDS 3 ACTIN-BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.N.RAO,R.DOMINGUEZ REVDAT 5 27-SEP-23 4PKG 1 REMARK LINK REVDAT 4 25-DEC-19 4PKG 1 REMARK REVDAT 3 06-SEP-17 4PKG 1 SOURCE JRNL REMARK REVDAT 2 06-AUG-14 4PKG 1 JRNL REVDAT 1 30-JUL-14 4PKG 0 JRNL AUTH J.N.RAO,Y.MADASU,R.DOMINGUEZ JRNL TITL ACTIN CYTOSKELETON. MECHANISM OF ACTIN FILAMENT POINTED-END JRNL TITL 2 CAPPING BY TROPOMODULIN. JRNL REF SCIENCE V. 345 463 2014 JRNL REFN ESSN 1095-9203 JRNL PMID 25061212 JRNL DOI 10.1126/SCIENCE.1256159 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 67450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9414 - 4.3352 0.99 4925 151 0.1349 0.1479 REMARK 3 2 4.3352 - 3.4417 1.00 4770 145 0.1337 0.1574 REMARK 3 3 3.4417 - 3.0069 1.00 4715 144 0.1684 0.2115 REMARK 3 4 3.0069 - 2.7320 1.00 4716 144 0.1631 0.2114 REMARK 3 5 2.7320 - 2.5362 1.00 4677 143 0.1555 0.1711 REMARK 3 6 2.5362 - 2.3867 1.00 4663 143 0.1479 0.1825 REMARK 3 7 2.3867 - 2.2672 1.00 4655 142 0.1505 0.2000 REMARK 3 8 2.2672 - 2.1685 1.00 4623 141 0.1573 0.1917 REMARK 3 9 2.1685 - 2.0851 1.00 4680 144 0.1692 0.2005 REMARK 3 10 2.0851 - 2.0131 1.00 4627 141 0.1738 0.2137 REMARK 3 11 2.0131 - 1.9502 1.00 4629 141 0.1852 0.2275 REMARK 3 12 1.9502 - 1.8944 1.00 4622 141 0.2101 0.2476 REMARK 3 13 1.8944 - 1.8446 1.00 4617 141 0.2348 0.2820 REMARK 3 14 1.8446 - 1.7996 0.98 4528 139 0.2710 0.2994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4511 REMARK 3 ANGLE : 1.295 6137 REMARK 3 CHIRALITY : 0.053 666 REMARK 3 PLANARITY : 0.006 789 REMARK 3 DIHEDRAL : 15.048 1723 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6131 15.0960 -14.0957 REMARK 3 T TENSOR REMARK 3 T11: 0.4272 T22: 0.2097 REMARK 3 T33: 0.3206 T12: 0.0414 REMARK 3 T13: -0.1205 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.7707 L22: 2.7609 REMARK 3 L33: 1.6133 L12: 0.2425 REMARK 3 L13: 0.4254 L23: -1.5110 REMARK 3 S TENSOR REMARK 3 S11: -0.1821 S12: -0.0025 S13: 0.3041 REMARK 3 S21: 0.0379 S22: 0.0505 S23: 0.2303 REMARK 3 S31: -0.7469 S32: -0.1207 S33: -0.0131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5471 2.9500 -7.7872 REMARK 3 T TENSOR REMARK 3 T11: 0.1871 T22: 0.1857 REMARK 3 T33: 0.2046 T12: -0.0060 REMARK 3 T13: -0.0479 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.9794 L22: 2.2596 REMARK 3 L33: 1.6798 L12: 0.2588 REMARK 3 L13: 0.5396 L23: -0.2177 REMARK 3 S TENSOR REMARK 3 S11: -0.1078 S12: -0.1164 S13: 0.2007 REMARK 3 S21: 0.0007 S22: 0.0155 S23: -0.1041 REMARK 3 S31: -0.2992 S32: 0.0821 S33: 0.0999 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8432 -6.4368 -26.6969 REMARK 3 T TENSOR REMARK 3 T11: 0.3787 T22: 0.2290 REMARK 3 T33: 0.2715 T12: -0.0390 REMARK 3 T13: -0.1712 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.3810 L22: 1.9649 REMARK 3 L33: 2.1259 L12: -0.5604 REMARK 3 L13: 0.2737 L23: -0.7841 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: 0.1468 S13: -0.0267 REMARK 3 S21: -0.6181 S22: 0.0283 S23: 0.3808 REMARK 3 S31: 0.0519 S32: -0.2619 S33: -0.0188 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4158 -6.2962 -4.2221 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.1955 REMARK 3 T33: 0.2058 T12: 0.0197 REMARK 3 T13: -0.0502 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.4892 L22: 2.3579 REMARK 3 L33: 1.6426 L12: 0.5865 REMARK 3 L13: -0.2374 L23: -0.4579 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: -0.4007 S13: -0.0531 REMARK 3 S21: 0.1219 S22: -0.0914 S23: -0.1993 REMARK 3 S31: 0.0969 S32: 0.0562 S33: 0.0364 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 52 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8247 -19.5376 11.5093 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.7106 REMARK 3 T33: 0.3117 T12: -0.0623 REMARK 3 T13: -0.1055 T23: 0.2898 REMARK 3 L TENSOR REMARK 3 L11: 2.7172 L22: 2.6422 REMARK 3 L33: 2.6786 L12: -1.1610 REMARK 3 L13: 0.8161 L23: -0.7245 REMARK 3 S TENSOR REMARK 3 S11: 0.1889 S12: -0.7916 S13: 0.0392 REMARK 3 S21: 0.4444 S22: -0.3826 S23: -0.6621 REMARK 3 S31: -0.0676 S32: 0.8391 S33: 0.0950 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 75 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9545 -23.6240 5.0599 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.3869 REMARK 3 T33: 0.3215 T12: -0.0031 REMARK 3 T13: -0.0033 T23: 0.1892 REMARK 3 L TENSOR REMARK 3 L11: 2.1836 L22: 1.4015 REMARK 3 L33: 1.2726 L12: 0.6738 REMARK 3 L13: 0.0230 L23: 0.0915 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.6382 S13: -0.5896 REMARK 3 S21: 0.2054 S22: -0.0300 S23: 0.0344 REMARK 3 S31: 0.0997 S32: 0.0632 S33: -0.0272 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1058 THROUGH 1076 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1858 19.5303 -28.8396 REMARK 3 T TENSOR REMARK 3 T11: 0.8082 T22: 0.6079 REMARK 3 T33: 0.7728 T12: 0.2334 REMARK 3 T13: -0.2050 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.6238 L22: 3.5672 REMARK 3 L33: 5.3095 L12: -0.9456 REMARK 3 L13: 0.0952 L23: 0.3039 REMARK 3 S TENSOR REMARK 3 S11: 0.1595 S12: 0.0975 S13: 0.5393 REMARK 3 S21: -0.1405 S22: -0.1930 S23: 0.9484 REMARK 3 S31: -0.4880 S32: -1.0750 S33: 0.0015 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1077 THROUGH 1091 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0964 23.6439 -7.4851 REMARK 3 T TENSOR REMARK 3 T11: 0.9314 T22: 0.5490 REMARK 3 T33: 0.9100 T12: 0.1543 REMARK 3 T13: -0.0247 T23: -0.1356 REMARK 3 L TENSOR REMARK 3 L11: 2.1362 L22: 2.3622 REMARK 3 L33: 1.9189 L12: -0.4016 REMARK 3 L13: -0.0782 L23: -0.5909 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: 0.0400 S13: 0.3848 REMARK 3 S21: 0.1348 S22: -0.1948 S23: -0.1585 REMARK 3 S31: -0.9144 S32: -0.4909 S33: 0.0530 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1092 THROUGH 1099 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2357 12.7814 0.0111 REMARK 3 T TENSOR REMARK 3 T11: 0.5744 T22: 0.7132 REMARK 3 T33: 0.8847 T12: -0.1922 REMARK 3 T13: -0.0926 T23: -0.2169 REMARK 3 L TENSOR REMARK 3 L11: 1.5999 L22: 2.8284 REMARK 3 L33: 3.4202 L12: 1.1113 REMARK 3 L13: 0.9375 L23: -0.5959 REMARK 3 S TENSOR REMARK 3 S11: -0.1704 S12: -0.4251 S13: 0.3869 REMARK 3 S21: 0.3649 S22: 0.0514 S23: -0.7328 REMARK 3 S31: -0.5479 S32: 0.4057 S33: 0.2113 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PKG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67450 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 43.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1EQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M SODIUM FLUORIDE, 11% W/V REMARK 280 PEG3350, 1% V/V PEG1000, 1% V/V PEG400, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.73550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.19800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.93300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.19800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.73550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.93300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 CYS A 0 REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 GLY G 178 REMARK 465 SER G 179 REMARK 465 GLY G 180 REMARK 465 GLY G 181 REMARK 465 SER G 182 REMARK 465 GLY G 183 REMARK 465 GLY G 184 REMARK 465 SER G 185 REMARK 465 GLN G 1050 REMARK 465 LYS G 1051 REMARK 465 ASP G 1052 REMARK 465 GLN G 1053 REMARK 465 THR G 1054 REMARK 465 THR G 1055 REMARK 465 LYS G 1056 REMARK 465 ALA G 1057 REMARK 465 GLN G 1100 REMARK 465 LYS G 1101 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 169 OD2 ASP G 137 1.48 REMARK 500 OH TYR A 169 OD2 ASP G 137 2.15 REMARK 500 OG SER A 271 O HOH A 718 2.15 REMARK 500 O HOH G 1429 O HOH G 1460 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 47 -174.68 -61.15 REMARK 500 MET A 47 -173.69 -62.95 REMARK 500 LYS A 50 107.64 -57.49 REMARK 500 ALA A 181 -158.97 -161.28 REMARK 500 ASN A 296 56.21 -143.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 167 OE1 REMARK 620 2 HOH A 699 O 70.4 REMARK 620 3 ASP G 136 OD1 142.7 145.5 REMARK 620 4 ASP G 136 OD2 93.5 163.4 49.7 REMARK 620 5 GLY G 141 O 139.5 78.9 74.7 117.4 REMARK 620 6 ALA G 143 O 95.5 84.4 82.7 93.2 107.4 REMARK 620 7 HOH G1422 O 76.3 89.0 106.2 91.3 77.4 170.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O3G REMARK 620 2 ATP A 401 O1B 77.1 REMARK 620 3 HOH A 556 O 77.3 92.3 REMARK 620 4 HOH A 557 O 147.4 82.6 78.3 REMARK 620 5 HOH A 719 O 135.6 92.8 147.0 70.1 REMARK 620 6 HOH A 720 O 96.0 170.7 80.1 100.7 96.5 REMARK 620 7 HOH A 736 O 67.2 98.5 139.3 141.9 71.8 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G1201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY G 92 O REMARK 620 2 ASP G 93 OD1 75.1 REMARK 620 3 GLU G 124 OE1 76.5 100.7 REMARK 620 4 GLU G 124 OE2 123.2 88.8 53.2 REMARK 620 5 VAL G 172 O 148.2 88.7 134.3 82.8 REMARK 620 6 HOH G1348 O 103.6 175.8 75.1 88.7 94.2 REMARK 620 7 HOH G1360 O 78.3 97.8 143.4 158.5 77.0 85.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA G 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PKH RELATED DB: PDB REMARK 900 RELATED ID: 4PKI RELATED DB: PDB DBREF 4PKG A -1 375 UNP P68135 ACTS_RABIT 1 377 DBREF 4PKG G 52 176 UNP P06396 GELS_HUMAN 12 136 DBREF 4PKG G 1050 1101 UNP P28289 TMOD1_HUMAN 50 101 SEQADV 4PKG GLY G 177 UNP P06396 LINKER SEQADV 4PKG GLY G 178 UNP P06396 LINKER SEQADV 4PKG SER G 179 UNP P06396 LINKER SEQADV 4PKG GLY G 180 UNP P06396 LINKER SEQADV 4PKG GLY G 181 UNP P06396 LINKER SEQADV 4PKG SER G 182 UNP P06396 LINKER SEQADV 4PKG GLY G 183 UNP P06396 LINKER SEQADV 4PKG GLY G 184 UNP P06396 LINKER SEQADV 4PKG SER G 185 UNP P06396 LINKER SEQRES 1 A 377 MET CYS ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP SEQRES 2 A 377 ASN GLY SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP SEQRES 3 A 377 ASP ALA PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG SEQRES 4 A 377 PRO ARG HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS SEQRES 5 A 377 ASP SER TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY SEQRES 6 A 377 ILE LEU THR LEU LYS TYR PRO ILE GLU HIC GLY ILE ILE SEQRES 7 A 377 THR ASN TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR SEQRES 8 A 377 PHE TYR ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO SEQRES 9 A 377 THR LEU LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN SEQRES 10 A 377 ARG GLU LYS MET THR GLN ILE MET PHE GLU THR PHE ASN SEQRES 11 A 377 VAL PRO ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER SEQRES 12 A 377 LEU TYR ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SEQRES 13 A 377 SER GLY ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU SEQRES 14 A 377 GLY TYR ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU SEQRES 15 A 377 ALA GLY ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU SEQRES 16 A 377 THR GLU ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG SEQRES 17 A 377 GLU ILE VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL SEQRES 18 A 377 ALA LEU ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SEQRES 19 A 377 SER SER SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY SEQRES 20 A 377 GLN VAL ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO SEQRES 21 A 377 GLU THR LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER SEQRES 22 A 377 ALA GLY ILE HIS GLU THR THR TYR ASN SER ILE MET LYS SEQRES 23 A 377 CYS ASP ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN SEQRES 24 A 377 VAL MET SER GLY GLY THR THR MET TYR PRO GLY ILE ALA SEQRES 25 A 377 ASP ARG MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER SEQRES 26 A 377 THR MET LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS SEQRES 27 A 377 TYR SER VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SEQRES 28 A 377 SER THR PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR SEQRES 29 A 377 ASP GLU ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 G 186 MET VAL VAL GLU HIS PRO GLU PHE LEU LYS ALA GLY LYS SEQRES 2 G 186 GLU PRO GLY LEU GLN ILE TRP ARG VAL GLU LYS PHE ASP SEQRES 3 G 186 LEU VAL PRO VAL PRO THR ASN LEU TYR GLY ASP PHE PHE SEQRES 4 G 186 THR GLY ASP ALA TYR VAL ILE LEU LYS THR VAL GLN LEU SEQRES 5 G 186 ARG ASN GLY ASN LEU GLN TYR ASP LEU HIS TYR TRP LEU SEQRES 6 G 186 GLY ASN GLU CYS SER GLN ASP GLU SER GLY ALA ALA ALA SEQRES 7 G 186 ILE PHE THR VAL GLN LEU ASP ASP TYR LEU ASN GLY ARG SEQRES 8 G 186 ALA VAL GLN HIS ARG GLU VAL GLN GLY PHE GLU SER ALA SEQRES 9 G 186 THR PHE LEU GLY TYR PHE LYS SER GLY LEU LYS TYR LYS SEQRES 10 G 186 LYS GLY GLY VAL ALA SER GLY PHE GLY GLY SER GLY GLY SEQRES 11 G 186 SER GLY GLY SER GLN LYS ASP GLN THR THR LYS ALA PRO SEQRES 12 G 186 THR GLY PRO PHE LYS ARG GLU GLU LEU LEU ASP HIS LEU SEQRES 13 G 186 GLU LYS GLN ALA LYS GLU PHE LYS ASP ARG GLU ASP LEU SEQRES 14 G 186 VAL PRO TYR THR GLY GLU LYS ARG GLY LYS VAL TRP VAL SEQRES 15 G 186 PRO LYS GLN LYS MODRES 4PKG HIC A 73 HIS MODIFIED RESIDUE HET HIC A 73 20 HET ATP A 401 42 HET CA A 402 1 HET CA A 403 1 HET CA G1201 1 HETNAM HIC 4-METHYL-HISTIDINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 1 HIC C7 H11 N3 O2 FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *511(H2 O) HELIX 1 AA1 GLY A 55 LYS A 61 1 7 HELIX 2 AA2 ASN A 78 GLU A 93 1 16 HELIX 3 AA3 ALA A 97 HIS A 101 5 5 HELIX 4 AA4 PRO A 112 THR A 126 1 15 HELIX 5 AA5 GLN A 137 SER A 145 1 9 HELIX 6 AA6 PRO A 172 ILE A 175 5 4 HELIX 7 AA7 ALA A 181 GLY A 197 1 17 HELIX 8 AA8 THR A 202 ALA A 204 5 3 HELIX 9 AA9 GLU A 205 CYS A 217 1 13 HELIX 10 AB1 ASP A 222 SER A 233 1 12 HELIX 11 AB2 ASN A 252 GLN A 263 1 12 HELIX 12 AB3 PRO A 264 GLY A 268 5 5 HELIX 13 AB4 GLY A 273 LYS A 284 1 12 HELIX 14 AB5 ASP A 286 ALA A 295 1 10 HELIX 15 AB6 GLY A 301 MET A 305 5 5 HELIX 16 AB7 GLY A 308 ALA A 321 1 14 HELIX 17 AB8 TYR A 337 LEU A 349 1 13 HELIX 18 AB9 SER A 350 GLN A 353 5 4 HELIX 19 AC1 LYS A 359 GLY A 366 1 8 HELIX 20 AC2 ILE A 369 CYS A 374 1 6 HELIX 21 AC3 HIS G 56 ALA G 62 1 7 HELIX 22 AC4 PRO G 82 TYR G 86 5 5 HELIX 23 AC5 SER G 121 LEU G 139 1 19 HELIX 24 AC6 SER G 154 TYR G 160 1 7 HELIX 25 AC7 LYS G 1063 GLU G 1077 1 15 SHEET 1 AA1 6 ALA A 29 PRO A 32 0 SHEET 2 AA1 6 LEU A 16 PHE A 21 -1 N VAL A 17 O PHE A 31 SHEET 3 AA1 6 LEU A 8 ASN A 12 -1 N ASP A 11 O LYS A 18 SHEET 4 AA1 6 THR A 103 GLU A 107 1 O LEU A 104 N CYS A 10 SHEET 5 AA1 6 ALA A 131 ILE A 136 1 O TYR A 133 N LEU A 105 SHEET 6 AA1 6 ILE A 357 THR A 358 -1 O ILE A 357 N MET A 132 SHEET 1 AA2 3 TYR A 53 VAL A 54 0 SHEET 2 AA2 3 VAL A 35 PRO A 38 -1 N GLY A 36 O TYR A 53 SHEET 3 AA2 3 LEU A 65 LYS A 68 -1 O THR A 66 N ARG A 37 SHEET 1 AA3 2 ILE A 71 GLU A 72 0 SHEET 2 AA3 2 ILE A 75 ILE A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 AA4 3 TYR A 169 ALA A 170 0 SHEET 2 AA4 3 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 AA4 3 MET A 176 LEU A 178 -1 O LEU A 178 N THR A 160 SHEET 1 AA5 5 TYR A 169 ALA A 170 0 SHEET 2 AA5 5 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 AA5 5 GLY A 150 SER A 155 -1 N GLY A 150 O ILE A 165 SHEET 4 AA5 5 ASN A 297 SER A 300 1 O SER A 300 N LEU A 153 SHEET 5 AA5 5 ILE A 329 ILE A 330 1 O ILE A 330 N ASN A 297 SHEET 1 AA6 2 LYS A 238 GLU A 241 0 SHEET 2 AA6 2 VAL A 247 ILE A 250 -1 O ILE A 248 N TYR A 240 SHEET 1 AA7 5 ASP G 77 PRO G 80 0 SHEET 2 AA7 5 GLY G 67 GLU G 74 -1 N ARG G 72 O VAL G 79 SHEET 3 AA7 5 ALA G 94 GLN G 102 -1 O THR G 100 N GLY G 67 SHEET 4 AA7 5 LEU G 108 LEU G 116 -1 O HIS G 113 N ILE G 97 SHEET 5 AA7 5 ALA G 143 VAL G 149 1 O GLU G 148 N TYR G 114 SHEET 1 AA8 2 ASP G 88 PHE G 90 0 SHEET 2 AA8 2 LYS G 166 LYS G 168 1 O LYS G 166 N PHE G 89 LINK C GLU A 72 N HIC A 73 1555 1555 1.32 LINK C HIC A 73 N GLY A 74 1555 1555 1.34 LINK OE1 GLU A 167 CA CA A 403 1555 1555 2.88 LINK O3G ATP A 401 CA CA A 402 1555 1555 2.37 LINK O1B ATP A 401 CA CA A 402 1555 1555 2.28 LINK CA CA A 402 O HOH A 556 1555 1555 2.41 LINK CA CA A 402 O HOH A 557 1555 1555 2.32 LINK CA CA A 402 O HOH A 719 1555 1555 2.36 LINK CA CA A 402 O HOH A 720 1555 1555 2.28 LINK CA CA A 402 O HOH A 736 1555 1555 2.55 LINK CA CA A 403 O HOH A 699 1555 1555 2.58 LINK CA CA A 403 OD1 ASP G 136 1555 1555 2.78 LINK CA CA A 403 OD2 ASP G 136 1555 1555 2.29 LINK CA CA A 403 O GLY G 141 1555 1555 2.56 LINK CA CA A 403 O ALA G 143 1555 1555 2.33 LINK CA CA A 403 O HOH G1422 1555 1555 2.48 LINK O GLY G 92 CA CA G1201 1555 1555 2.22 LINK OD1 ASP G 93 CA CA G1201 1555 1555 2.31 LINK OE1 GLU G 124 CA CA G1201 1555 1555 2.48 LINK OE2 GLU G 124 CA CA G1201 1555 1555 2.43 LINK O VAL G 172 CA CA G1201 1555 1555 2.38 LINK CA CA G1201 O HOH G1348 1555 1555 2.29 LINK CA CA G1201 O HOH G1360 1555 1555 2.35 CISPEP 1 VAL A 45 GLY A 46 0 8.70 CISPEP 2 MET G 52 VAL G 53 0 4.24 SITE 1 AC1 28 GLY A 13 SER A 14 GLY A 15 LEU A 16 SITE 2 AC1 28 LYS A 18 GLY A 156 ASP A 157 GLY A 158 SITE 3 AC1 28 VAL A 159 GLY A 182 ARG A 210 LYS A 213 SITE 4 AC1 28 GLU A 214 GLY A 301 GLY A 302 THR A 303 SITE 5 AC1 28 MET A 305 TYR A 306 LYS A 336 CA A 402 SITE 6 AC1 28 HOH A 555 HOH A 556 HOH A 557 HOH A 561 SITE 7 AC1 28 HOH A 571 HOH A 579 HOH A 731 HOH A 736 SITE 1 AC2 6 ATP A 401 HOH A 556 HOH A 557 HOH A 719 SITE 2 AC2 6 HOH A 720 HOH A 736 SITE 1 AC3 6 GLU A 167 HOH A 699 ASP G 136 GLY G 141 SITE 2 AC3 6 ALA G 143 HOH G1422 SITE 1 AC4 6 GLY G 92 ASP G 93 GLU G 124 VAL G 172 SITE 2 AC4 6 HOH G1348 HOH G1360 CRYST1 69.471 75.866 136.396 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007332 0.00000