PDB Short entry for 4PO7 HEADER PROTEIN BINDING 25-FEB-14 4PO7 TITLE STRUCTURE OF THE SORTILIN:NEUROTENSIN COMPLEX AT EXCESS NEUROTENSIN TITLE 2 CONCENTRATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTILIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 78-756; COMPND 5 SYNONYM: 100 KDA NT RECEPTOR, GLYCOPROTEIN 95, GP95, NEUROTENSIN COMPND 6 RECEPTOR 3, NT3, NTR3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NEUROTENSIN/NEUROMEDIN N; COMPND 10 CHAIN: N, P; COMPND 11 FRAGMENT: UNP RESIDUES 151-163; COMPND 12 SYNONYM: LARGE NEUROMEDIN N, NMN-125, NEUROMEDIN N, NN, NMN, COMPND 13 NEUROTENSIN, NT, TAIL PEPTIDE; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SORT1; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: CHO-K1; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS 10 BLADED BETA-PROPELLER, PROTEIN SORTING RECEPTOR, NEUROTENSIN, KEYWDS 2 GLYCOSYLATION, TRANS GOLGI NETWORK, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR E.M.QUISTGAARD,M.K.GROFTEHAUGE,S.S.THIRUP REVDAT 7 21-OCT-20 4PO7 1 REMARK HETSYN REVDAT 6 29-JUL-20 4PO7 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 25-DEC-19 4PO7 1 SEQADV SEQRES LINK REVDAT 4 07-MAR-18 4PO7 1 REMARK REVDAT 3 24-SEP-14 4PO7 1 JRNL REVDAT 2 30-JUL-14 4PO7 1 SOURCE REVDAT 1 23-JUL-14 4PO7 0 JRNL AUTH E.M.QUISTGAARD,M.K.GRFTEHAUGE,P.MADSEN,L.T.PALLESEN, JRNL AUTH 2 B.CHRISTENSEN,E.S.SRENSEN,P.NISSEN,C.M.PETERSEN,S.S.THIRUP JRNL TITL REVISITING THE STRUCTURE OF THE VPS10 DOMAIN OF HUMAN JRNL TITL 2 SORTILIN AND ITS INTERACTION WITH NEUROTENSIN. JRNL REF PROTEIN SCI. V. 23 1291 2014 JRNL REFN ISSN 0961-8368 JRNL PMID 24985322 JRNL DOI 10.1002/PRO.2512 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.3_1479) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 31988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.9688 - 6.0450 0.96 2535 129 0.1587 0.1944 REMARK 3 2 6.0450 - 4.8172 1.00 2579 134 0.1416 0.1635 REMARK 3 3 4.8172 - 4.2139 0.99 2543 135 0.1274 0.1602 REMARK 3 4 4.2139 - 3.8312 1.00 2565 138 0.1449 0.2122 REMARK 3 5 3.8312 - 3.5580 0.99 2524 141 0.1693 0.2060 REMARK 3 6 3.5580 - 3.3491 1.00 2538 133 0.1789 0.2588 REMARK 3 7 3.3491 - 3.1820 0.99 2489 153 0.1999 0.2561 REMARK 3 8 3.1820 - 3.0439 0.99 2540 138 0.2109 0.2771 REMARK 3 9 3.0439 - 2.9271 0.99 2502 143 0.2225 0.3030 REMARK 3 10 2.9271 - 2.8263 0.99 2554 113 0.2411 0.2904 REMARK 3 11 2.8263 - 2.7381 0.99 2500 132 0.2485 0.3344 REMARK 3 12 2.7381 - 2.6600 0.99 2499 131 0.2416 0.2861 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5548 REMARK 3 ANGLE : 0.756 7508 REMARK 3 CHIRALITY : 0.031 835 REMARK 3 PLANARITY : 0.003 953 REMARK 3 DIHEDRAL : 12.208 2009 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 96) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8992 -10.7658 41.0406 REMARK 3 T TENSOR REMARK 3 T11: 0.8528 T22: 1.1599 REMARK 3 T33: 0.6391 T12: -0.0821 REMARK 3 T13: -0.2160 T23: 0.2688 REMARK 3 L TENSOR REMARK 3 L11: 3.8101 L22: 8.6691 REMARK 3 L33: 1.0346 L12: -1.9952 REMARK 3 L13: -0.2655 L23: -0.6054 REMARK 3 S TENSOR REMARK 3 S11: -0.3265 S12: -1.0704 S13: -0.6142 REMARK 3 S21: 0.6219 S22: 0.1501 S23: 0.1421 REMARK 3 S31: 0.4335 S32: 0.4570 S33: 0.1450 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 97 THROUGH 137 ) OR (RESID REMARK 3 807)) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0383 4.3984 49.0542 REMARK 3 T TENSOR REMARK 3 T11: 1.0668 T22: 0.9889 REMARK 3 T33: 0.5300 T12: -0.1331 REMARK 3 T13: -0.1364 T23: 0.1018 REMARK 3 L TENSOR REMARK 3 L11: 9.2328 L22: 5.0679 REMARK 3 L33: 1.6789 L12: -5.6548 REMARK 3 L13: -2.0466 L23: 1.7258 REMARK 3 S TENSOR REMARK 3 S11: -0.1941 S12: -1.1508 S13: -0.4142 REMARK 3 S21: 0.7250 S22: 0.3225 S23: 0.2594 REMARK 3 S31: -0.3320 S32: 0.7003 S33: -0.0957 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1647 15.3997 38.7501 REMARK 3 T TENSOR REMARK 3 T11: 1.0365 T22: 0.7712 REMARK 3 T33: 0.6005 T12: -0.2867 REMARK 3 T13: -0.0484 T23: -0.0577 REMARK 3 L TENSOR REMARK 3 L11: 7.6992 L22: 3.8265 REMARK 3 L33: 3.6422 L12: -2.1466 REMARK 3 L13: -0.0759 L23: -1.6156 REMARK 3 S TENSOR REMARK 3 S11: 0.0656 S12: -0.6829 S13: 0.1304 REMARK 3 S21: 0.5737 S22: 0.2301 S23: -0.4786 REMARK 3 S31: -0.9462 S32: 0.2535 S33: -0.2380 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5309 17.5234 15.6405 REMARK 3 T TENSOR REMARK 3 T11: 0.8425 T22: 0.5140 REMARK 3 T33: 0.5468 T12: 0.0483 REMARK 3 T13: 0.1189 T23: 0.1080 REMARK 3 L TENSOR REMARK 3 L11: 2.0832 L22: 4.3309 REMARK 3 L33: 6.0000 L12: -0.1428 REMARK 3 L13: 0.6259 L23: 2.5685 REMARK 3 S TENSOR REMARK 3 S11: 0.2146 S12: 0.1959 S13: 0.4843 REMARK 3 S21: -0.1999 S22: -0.1943 S23: 0.0045 REMARK 3 S31: -1.4986 S32: -0.1700 S33: 0.0163 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 353 THROUGH 470 ) OR (RESID REMARK 3 801 THROUGH 803)) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9660 -12.4021 13.1552 REMARK 3 T TENSOR REMARK 3 T11: 0.2867 T22: 0.5138 REMARK 3 T33: 0.4152 T12: -0.0149 REMARK 3 T13: 0.0065 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 5.4614 L22: 6.5693 REMARK 3 L33: 5.0163 L12: -0.1584 REMARK 3 L13: -1.6274 L23: -1.0582 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: 0.3507 S13: -0.3781 REMARK 3 S21: -0.0356 S22: -0.2088 S23: 0.1496 REMARK 3 S31: 0.1855 S32: -0.4445 S33: 0.1159 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 471 THROUGH 627 ) OR (RESID REMARK 3 804 THROUGH 806)) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1186 -16.7815 26.1538 REMARK 3 T TENSOR REMARK 3 T11: 0.5605 T22: 0.6477 REMARK 3 T33: 0.7290 T12: 0.0316 REMARK 3 T13: -0.1046 T23: 0.2045 REMARK 3 L TENSOR REMARK 3 L11: 3.0613 L22: 2.0626 REMARK 3 L33: 4.6445 L12: 0.0096 REMARK 3 L13: -0.6726 L23: 0.3180 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: -0.5136 S13: -0.4638 REMARK 3 S21: 0.4810 S22: -0.2073 S23: -0.5930 REMARK 3 S31: 0.6065 S32: 0.7477 S33: 0.1782 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 628 THROUGH 714 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5481 7.5846 -9.6565 REMARK 3 T TENSOR REMARK 3 T11: 0.7871 T22: 1.4612 REMARK 3 T33: 1.0291 T12: 0.2732 REMARK 3 T13: 0.1181 T23: 0.2589 REMARK 3 L TENSOR REMARK 3 L11: 5.3921 L22: 7.3110 REMARK 3 L33: 1.4556 L12: -7.8735 REMARK 3 L13: 3.2706 L23: -4.7663 REMARK 3 S TENSOR REMARK 3 S11: 0.5995 S12: 1.5686 S13: 0.8871 REMARK 3 S21: -0.7645 S22: -1.1992 S23: -0.9263 REMARK 3 S31: -0.0294 S32: 0.5133 S33: 0.4447 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'N' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3875 2.1551 27.8553 REMARK 3 T TENSOR REMARK 3 T11: 1.1643 T22: 1.0911 REMARK 3 T33: 0.7040 T12: -0.1460 REMARK 3 T13: -0.1901 T23: -0.0758 REMARK 3 L TENSOR REMARK 3 L11: 5.5103 L22: 5.8794 REMARK 3 L33: 3.0321 L12: -2.8527 REMARK 3 L13: 3.9668 L23: -1.3452 REMARK 3 S TENSOR REMARK 3 S11: 0.6988 S12: 1.0507 S13: -1.0463 REMARK 3 S21: 2.5242 S22: -1.3427 S23: -0.1027 REMARK 3 S31: -1.5751 S32: 2.1848 S33: 0.1679 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 9 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5904 21.6120 50.5864 REMARK 3 T TENSOR REMARK 3 T11: 1.5314 T22: 1.7008 REMARK 3 T33: 1.0833 T12: -0.1106 REMARK 3 T13: -0.4326 T23: 0.3531 REMARK 3 L TENSOR REMARK 3 L11: 9.4509 L22: 8.2422 REMARK 3 L33: 1.6172 L12: -7.7308 REMARK 3 L13: -0.4605 L23: 0.4648 REMARK 3 S TENSOR REMARK 3 S11: -0.7897 S12: 0.0204 S13: 1.1561 REMARK 3 S21: -0.3001 S22: 0.0859 S23: -0.8536 REMARK 3 S31: 0.5480 S32: -1.2689 S33: 0.9624 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000085013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90736 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 20.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.37 REMARK 200 R MERGE FOR SHELL (I) : 0.74400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6K, 300 MM SODIUM MALONATE, 3% REMARK 280 GLYCEROL AND 100 MM TRISHCL, PH 7.9, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.00500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.00500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, N, P, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 45 REMARK 465 ALA A 46 REMARK 465 PRO A 47 REMARK 465 GLY A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 GLU A 51 REMARK 465 GLU A 52 REMARK 465 PHE A 559 REMARK 465 GLU A 650 REMARK 465 ASN A 651 REMARK 465 ASP A 652 REMARK 465 GLU A 715 REMARK 465 LYS A 716 REMARK 465 GLN A 717 REMARK 465 ASN A 718 REMARK 465 SER A 719 REMARK 465 LYS A 720 REMARK 465 SER A 721 REMARK 465 ASN A 722 REMARK 465 SER A 723 REMARK 465 HIS A 724 REMARK 465 HIS A 725 REMARK 465 HIS A 726 REMARK 465 HIS A 727 REMARK 465 HIS A 728 REMARK 465 HIS A 729 REMARK 465 LYS N 6 REMARK 465 PRO N 7 REMARK 465 ARG N 8 REMARK 465 ARG N 9 REMARK 465 PCA P 1 REMARK 465 LEU P 2 REMARK 465 TYR P 3 REMARK 465 GLU P 4 REMARK 465 ASN P 5 REMARK 465 LYS P 6 REMARK 465 PRO P 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE P 12 CG1 CG2 CD1 REMARK 470 LEU P 13 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 144 -132.30 56.33 REMARK 500 ASP A 247 38.48 -91.75 REMARK 500 ASN A 324 -151.71 -125.96 REMARK 500 TYR A 362 102.49 -170.69 REMARK 500 CYS A 425 -155.29 -165.83 REMARK 500 ALA A 431 -152.72 -142.53 REMARK 500 ASN A 512 26.84 -140.25 REMARK 500 LEU A 575 64.84 -104.32 REMARK 500 ASP A 593 82.25 -150.12 REMARK 500 ARG A 698 -132.58 -156.50 REMARK 500 VAL A 700 -58.35 -22.15 REMARK 500 ARG P 9 76.02 43.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 PG4 A 808 DBREF 4PO7 A 45 723 UNP Q99523 SORT_HUMAN 78 756 DBREF 4PO7 N 1 13 UNP P30990 NEUT_HUMAN 151 163 DBREF 4PO7 P 1 13 UNP P30990 NEUT_HUMAN 151 163 SEQADV 4PO7 MET A 617 UNP Q99523 VAL 650 VARIANT SEQADV 4PO7 HIS A 724 UNP Q99523 EXPRESSION TAG SEQADV 4PO7 HIS A 725 UNP Q99523 EXPRESSION TAG SEQADV 4PO7 HIS A 726 UNP Q99523 EXPRESSION TAG SEQADV 4PO7 HIS A 727 UNP Q99523 EXPRESSION TAG SEQADV 4PO7 HIS A 728 UNP Q99523 EXPRESSION TAG SEQADV 4PO7 HIS A 729 UNP Q99523 EXPRESSION TAG SEQRES 1 A 685 SER ALA PRO GLY GLU ASP GLU GLU CYS GLY ARG VAL ARG SEQRES 2 A 685 ASP PHE VAL ALA LYS LEU ALA ASN ASN THR HIS GLN HIS SEQRES 3 A 685 VAL PHE ASP ASP LEU ARG GLY SER VAL SER LEU SER TRP SEQRES 4 A 685 VAL GLY ASP SER THR GLY VAL ILE LEU VAL LEU THR THR SEQRES 5 A 685 PHE HIS VAL PRO LEU VAL ILE MET THR PHE GLY GLN SER SEQRES 6 A 685 LYS LEU TYR ARG SER GLU ASP TYR GLY LYS ASN PHE LYS SEQRES 7 A 685 ASP ILE THR ASP LEU ILE ASN ASN THR PHE ILE ARG THR SEQRES 8 A 685 GLU PHE GLY MET ALA ILE GLY PRO GLU ASN SER GLY LYS SEQRES 9 A 685 VAL VAL LEU THR ALA GLU VAL SER GLY GLY SER ARG GLY SEQRES 10 A 685 GLY ARG ILE PHE ARG SER SER ASP PHE ALA LYS ASN PHE SEQRES 11 A 685 VAL GLN THR ASP LEU PRO PHE HIS PRO LEU THR GLN MET SEQRES 12 A 685 MET TYR SER PRO GLN ASN SER ASP TYR LEU LEU ALA LEU SEQRES 13 A 685 SER THR GLU ASN GLY LEU TRP VAL SER LYS ASN PHE GLY SEQRES 14 A 685 GLY LYS TRP GLU GLU ILE HIS LYS ALA VAL CYS LEU ALA SEQRES 15 A 685 LYS TRP GLY SER ASP ASN THR ILE PHE PHE THR THR TYR SEQRES 16 A 685 ALA ASN GLY SER CYS LYS ALA ASP LEU GLY ALA LEU GLU SEQRES 17 A 685 LEU TRP ARG THR SER ASP LEU GLY LYS SER PHE LYS THR SEQRES 18 A 685 ILE GLY VAL LYS ILE TYR SER PHE GLY LEU GLY GLY ARG SEQRES 19 A 685 PHE LEU PHE ALA SER VAL MET ALA ASP LYS ASP THR THR SEQRES 20 A 685 ARG ARG ILE HIS VAL SER THR ASP GLN GLY ASP THR TRP SEQRES 21 A 685 SER MET ALA GLN LEU PRO SER VAL GLY GLN GLU GLN PHE SEQRES 22 A 685 TYR SER ILE LEU ALA ALA ASN ASP ASP MET VAL PHE MET SEQRES 23 A 685 HIS VAL ASP GLU PRO GLY ASP THR GLY PHE GLY THR ILE SEQRES 24 A 685 PHE THR SER ASP ASP ARG GLY ILE VAL TYR SER LYS SER SEQRES 25 A 685 LEU ASP ARG HIS LEU TYR THR THR THR GLY GLY GLU THR SEQRES 26 A 685 ASP PHE THR ASN VAL THR SER LEU ARG GLY VAL TYR ILE SEQRES 27 A 685 THR SER VAL LEU SER GLU ASP ASN SER ILE GLN THR MET SEQRES 28 A 685 ILE THR PHE ASP GLN GLY GLY ARG TRP THR HIS LEU ARG SEQRES 29 A 685 LYS PRO GLU ASN SER GLU CYS ASP ALA THR ALA LYS ASN SEQRES 30 A 685 LYS ASN GLU CYS SER LEU HIS ILE HIS ALA SER TYR SER SEQRES 31 A 685 ILE SER GLN LYS LEU ASN VAL PRO MET ALA PRO LEU SER SEQRES 32 A 685 GLU PRO ASN ALA VAL GLY ILE VAL ILE ALA HIS GLY SER SEQRES 33 A 685 VAL GLY ASP ALA ILE SER VAL MET VAL PRO ASP VAL TYR SEQRES 34 A 685 ILE SER ASP ASP GLY GLY TYR SER TRP THR LYS MET LEU SEQRES 35 A 685 GLU GLY PRO HIS TYR TYR THR ILE LEU ASP SER GLY GLY SEQRES 36 A 685 ILE ILE VAL ALA ILE GLU HIS SER SER ARG PRO ILE ASN SEQRES 37 A 685 VAL ILE LYS PHE SER THR ASP GLU GLY GLN CYS TRP GLN SEQRES 38 A 685 THR TYR THR PHE THR ARG ASP PRO ILE TYR PHE THR GLY SEQRES 39 A 685 LEU ALA SER GLU PRO GLY ALA ARG SER MET ASN ILE SER SEQRES 40 A 685 ILE TRP GLY PHE THR GLU SER PHE LEU THR SER GLN TRP SEQRES 41 A 685 VAL SER TYR THR ILE ASP PHE LYS ASP ILE LEU GLU ARG SEQRES 42 A 685 ASN CYS GLU GLU LYS ASP TYR THR ILE TRP LEU ALA HIS SEQRES 43 A 685 SER THR ASP PRO GLU ASP TYR GLU ASP GLY CYS ILE LEU SEQRES 44 A 685 GLY TYR LYS GLU GLN PHE LEU ARG LEU ARG LYS SER SER SEQRES 45 A 685 MET CYS GLN ASN GLY ARG ASP TYR VAL VAL THR LYS GLN SEQRES 46 A 685 PRO SER ILE CYS LEU CYS SER LEU GLU ASP PHE LEU CYS SEQRES 47 A 685 ASP PHE GLY TYR TYR ARG PRO GLU ASN ASP SER LYS CYS SEQRES 48 A 685 VAL GLU GLN PRO GLU LEU LYS GLY HIS ASP LEU GLU PHE SEQRES 49 A 685 CYS LEU TYR GLY ARG GLU GLU HIS LEU THR THR ASN GLY SEQRES 50 A 685 TYR ARG LYS ILE PRO GLY ASP LYS CYS GLN GLY GLY VAL SEQRES 51 A 685 ASN PRO VAL ARG GLU VAL LYS ASP LEU LYS LYS LYS CYS SEQRES 52 A 685 THR SER ASN PHE LEU SER PRO GLU LYS GLN ASN SER LYS SEQRES 53 A 685 SER ASN SER HIS HIS HIS HIS HIS HIS SEQRES 1 N 13 PCA LEU TYR GLU ASN LYS PRO ARG ARG PRO TYR ILE LEU SEQRES 1 P 13 PCA LEU TYR GLU ASN LYS PRO ARG ARG PRO TYR ILE LEU MODRES 4PO7 ASN A 373 ASN GLYCOSYLATION SITE MODRES 4PO7 ASN A 129 ASN GLYCOSYLATION SITE MODRES 4PO7 ASN A 549 ASN GLYCOSYLATION SITE MODRES 4PO7 PCA N 1 GLN PYROGLUTAMIC ACID HET PCA N 1 8 HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG A 807 14 HET PG4 A 808 13 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 PCA C5 H7 N O3 FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 7 PG4 C8 H18 O5 FORMUL 8 HOH *108(H2 O) HELIX 1 1 ASP A 58 ASN A 65 1 8 HELIX 2 2 THR A 125 ASN A 129 5 5 HELIX 3 3 SER A 230 ASN A 232 5 3 HELIX 4 4 ALA A 431 GLN A 437 1 7 HELIX 5 5 ASP A 496 GLY A 499 5 4 HELIX 6 6 LYS A 572 ILE A 574 5 3 HELIX 7 7 GLU A 580 LYS A 582 5 3 HELIX 8 8 SER A 636 GLU A 638 5 3 HELIX 9 9 GLY A 663 GLY A 672 1 10 HELIX 10 10 ARG A 673 THR A 678 1 6 HELIX 11 11 LEU A 703 SER A 709 1 7 SHEET 1 A 4 THR A 67 PHE A 72 0 SHEET 2 A 4 TRP A 564 ASP A 570 -1 O THR A 568 N HIS A 68 SHEET 3 A 4 ASN A 549 THR A 556 -1 N GLY A 554 O VAL A 565 SHEET 4 A 4 ILE A 534 ALA A 540 -1 N ALA A 540 O SER A 551 SHEET 1 B 5 LYS A 122 ASP A 123 0 SHEET 2 B 5 LEU A 111 SER A 114 -1 N ARG A 113 O LYS A 122 SHEET 3 B 5 ILE A 91 THR A 96 -1 N VAL A 93 O TYR A 112 SHEET 4 B 5 SER A 78 TRP A 83 -1 N SER A 82 O LEU A 92 SHEET 5 B 5 LEU N 2 GLU N 4 1 O TYR N 3 N VAL A 79 SHEET 1 C 4 MET A 139 ILE A 141 0 SHEET 2 C 4 VAL A 149 THR A 152 -1 O VAL A 150 N ALA A 140 SHEET 3 C 4 ARG A 163 SER A 167 -1 O SER A 167 N VAL A 149 SHEET 4 C 4 VAL A 175 ASP A 178 -1 O VAL A 175 N ARG A 166 SHEET 1 D 4 MET A 188 SER A 190 0 SHEET 2 D 4 ASN A 193 LEU A 200 -1 O LEU A 198 N MET A 188 SHEET 3 D 4 LEU A 206 SER A 209 -1 O TRP A 207 N ALA A 199 SHEET 4 D 4 GLU A 217 HIS A 220 -1 O ILE A 219 N LEU A 206 SHEET 1 E 4 VAL A 223 TRP A 228 0 SHEET 2 E 4 ILE A 234 THR A 238 -1 O PHE A 235 N LYS A 227 SHEET 3 E 4 GLU A 252 THR A 256 -1 O TRP A 254 N PHE A 236 SHEET 4 E 4 LYS A 264 THR A 265 -1 O LYS A 264 N ARG A 255 SHEET 1 F 4 ILE A 270 GLY A 276 0 SHEET 2 F 4 PHE A 279 MET A 285 -1 O SER A 283 N TYR A 271 SHEET 3 F 4 ARG A 292 SER A 297 -1 O SER A 297 N LEU A 280 SHEET 4 F 4 SER A 305 MET A 306 -1 O SER A 305 N VAL A 296 SHEET 1 G 5 TYR A 353 LEU A 361 0 SHEET 2 G 5 PHE A 340 SER A 346 -1 N GLY A 341 O HIS A 360 SHEET 3 G 5 VAL A 328 ASP A 333 -1 N MET A 330 O PHE A 344 SHEET 4 G 5 TYR A 318 ALA A 323 -1 N ALA A 322 O PHE A 329 SHEET 5 G 5 TYR N 11 ILE N 12 -1 O TYR N 11 N ILE A 320 SHEET 1 H 4 THR A 372 ASN A 373 0 SHEET 2 H 4 TYR A 381 LEU A 386 -1 O ILE A 382 N THR A 372 SHEET 3 H 4 ILE A 392 THR A 397 -1 O GLN A 393 N VAL A 385 SHEET 4 H 4 TRP A 404 HIS A 406 -1 O THR A 405 N ILE A 396 SHEET 1 I 4 SER A 426 ILE A 429 0 SHEET 2 I 4 VAL A 455 GLY A 462 -1 O SER A 460 N HIS A 428 SHEET 3 I 4 ASP A 471 SER A 475 -1 O TYR A 473 N ALA A 457 SHEET 4 I 4 THR A 483 LEU A 486 -1 O LEU A 486 N VAL A 472 SHEET 1 J 4 HIS A 490 LEU A 495 0 SHEET 2 J 4 ILE A 500 GLU A 505 -1 O ILE A 500 N LEU A 495 SHEET 3 J 4 VAL A 513 SER A 517 -1 O LYS A 515 N ALA A 503 SHEET 4 J 4 GLN A 525 THR A 528 -1 O TYR A 527 N ILE A 514 SHEET 1 K 3 TYR A 584 LEU A 588 0 SHEET 2 K 3 TYR A 605 LEU A 612 -1 O PHE A 609 N TRP A 587 SHEET 3 K 3 LYS A 628 ILE A 632 -1 O SER A 631 N LYS A 606 SHEET 1 L 2 PHE A 640 CYS A 642 0 SHEET 2 L 2 TYR A 682 LYS A 684 -1 O ARG A 683 N LEU A 641 SHEET 1 M 2 TYR A 646 TYR A 647 0 SHEET 2 M 2 VAL A 656 GLU A 657 -1 O VAL A 656 N TYR A 647 SSBOND 1 CYS A 53 CYS A 523 1555 1555 2.03 SSBOND 2 CYS A 224 CYS A 244 1555 1555 2.04 SSBOND 3 CYS A 415 CYS A 425 1555 1555 2.03 SSBOND 4 CYS A 579 CYS A 618 1555 1555 2.03 SSBOND 5 CYS A 601 CYS A 633 1555 1555 2.03 SSBOND 6 CYS A 635 CYS A 690 1555 1555 2.03 SSBOND 7 CYS A 642 CYS A 655 1555 1555 2.03 SSBOND 8 CYS A 669 CYS A 707 1555 1555 2.03 LINK ND2 ASN A 129 C1 NAG A 807 1555 1555 1.44 LINK ND2 ASN A 373 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 549 C1 NAG C 1 1555 1555 1.44 LINK C PCA N 1 N LEU N 2 1555 1555 1.33 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 CRYST1 162.010 78.650 110.980 90.00 126.62 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006172 0.000000 0.004587 0.00000 SCALE2 0.000000 0.012715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011227 0.00000