PDB Short entry for 4Q0R HEADER HYDROLASE/DNA 02-APR-14 4Q0R TITLE THE CATALYTIC CORE OF RAD2 (COMPLEX I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN RAD2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ENZYME CATALYTIC CORE, UNP RESIDUES 2-111, UNP RESIDUES COMPND 5 732-986; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*TP*GP*AP*GP*TP*CP*AP*GP*AP*GP*CP*AP*AP*A)- COMPND 10 3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: RAD2, YGR258C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) ROSSETA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS NUCLEASE, NUCLEOTIDE EXCISION REPAIR, NUCLEUS, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.MIETUS,E.NOWAK,M.JACIUK,P.KUSTOSZ,M.NOWOTNY REVDAT 4 09-AUG-17 4Q0R 1 SOURCE REVDAT 3 01-OCT-14 4Q0R 1 JRNL REVDAT 2 17-SEP-14 4Q0R 1 TITLE REVDAT 1 27-AUG-14 4Q0R 0 JRNL AUTH M.MIETUS,E.NOWAK,M.JACIUK,P.KUSTOSZ,J.STUDNICKA,M.NOWOTNY JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC CORE OF RAD2: INSIGHTS JRNL TITL 2 INTO THE MECHANISM OF SUBSTRATE BINDING. JRNL REF NUCLEIC ACIDS RES. V. 42 10762 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 25120270 JRNL DOI 10.1093/NAR/GKU729 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 39066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4101 - 6.6189 1.00 2708 153 0.2342 0.2585 REMARK 3 2 6.6189 - 5.2576 1.00 2707 134 0.2561 0.3080 REMARK 3 3 5.2576 - 4.5941 1.00 2770 108 0.2290 0.3234 REMARK 3 4 4.5941 - 4.1746 1.00 2713 128 0.2108 0.2763 REMARK 3 5 4.1746 - 3.8757 1.00 2673 156 0.2225 0.3312 REMARK 3 6 3.8757 - 3.6473 1.00 2711 165 0.2430 0.2602 REMARK 3 7 3.6473 - 3.4648 1.00 2681 160 0.2565 0.3499 REMARK 3 8 3.4648 - 3.3140 1.00 2711 154 0.2721 0.3615 REMARK 3 9 3.3140 - 3.1865 1.00 2715 126 0.2649 0.3633 REMARK 3 10 3.1865 - 3.0766 1.00 2710 147 0.2634 0.3272 REMARK 3 11 3.0766 - 2.9804 1.00 2735 130 0.2730 0.3260 REMARK 3 12 2.9804 - 2.8953 0.98 2612 170 0.2841 0.3375 REMARK 3 13 2.8953 - 2.8191 0.92 2442 158 0.2887 0.3462 REMARK 3 14 2.8191 - 2.7503 0.80 2167 122 0.3175 0.4244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4587 REMARK 3 ANGLE : 1.163 6241 REMARK 3 CHIRALITY : 0.042 697 REMARK 3 PLANARITY : 0.005 791 REMARK 3 DIHEDRAL : 15.922 1629 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9799 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.50933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.75467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.75467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.50933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 LEU A 39 REMARK 465 LYS A 40 REMARK 465 ALA A 41 REMARK 465 VAL A 42 REMARK 465 ARG A 43 REMARK 465 ASP A 44 REMARK 465 GLN A 45 REMARK 465 GLU A 46 REMARK 465 GLY A 47 REMARK 465 ASN A 48 REMARK 465 ALA A 49 REMARK 465 VAL A 50 REMARK 465 LYS A 51 REMARK 465 ASN A 52 REMARK 465 GLU A 713 REMARK 465 ARG A 714 REMARK 465 ARG A 715 REMARK 465 GLN A 716 REMARK 465 GLY A 717 REMARK 465 LYS A 718 REMARK 465 ARG A 719 REMARK 465 GLU A 720 REMARK 465 SER A 721 REMARK 465 ALA A 722 REMARK 465 LYS A 723 REMARK 465 SER A 724 REMARK 465 THR A 725 REMARK 465 ALA A 726 REMARK 465 ARG A 727 REMARK 465 LYS A 728 REMARK 465 LEU A 729 REMARK 465 LEU A 730 REMARK 465 ALA A 731 REMARK 465 ASN A 732 REMARK 465 THR A 733 REMARK 465 THR A 734 REMARK 465 LEU A 735 REMARK 465 SER A 736 REMARK 465 THR A 737 REMARK 465 SER A 738 REMARK 465 ALA A 739 REMARK 465 GLU A 740 REMARK 465 ARG A 741 REMARK 465 ASN A 742 REMARK 465 VAL A 743 REMARK 465 ALA A 744 REMARK 465 GLU A 745 REMARK 465 ASN A 746 REMARK 465 ALA A 747 REMARK 465 PHE A 748 REMARK 465 VAL A 749 REMARK 465 GLU A 750 REMARK 465 ASP A 751 REMARK 465 GLU A 752 REMARK 465 LEU A 753 REMARK 465 PHE A 754 REMARK 465 GLU A 755 REMARK 465 GLN A 756 REMARK 465 GLN A 757 REMARK 465 MSE A 758 REMARK 465 LYS A 759 REMARK 465 ASP A 760 REMARK 465 LYS A 761 REMARK 465 ARG A 762 REMARK 465 ASP A 763 REMARK 465 SER A 764 REMARK 465 ASP A 765 REMARK 465 GLU A 766 REMARK 465 VAL A 767 REMARK 465 ILE A 983 REMARK 465 ARG A 984 REMARK 465 ASP A 985 REMARK 465 VAL A 986 REMARK 465 ILE B 35 REMARK 465 TYR B 36 REMARK 465 GLN B 37 REMARK 465 PHE B 38 REMARK 465 LEU B 39 REMARK 465 LYS B 40 REMARK 465 ALA B 41 REMARK 465 VAL B 42 REMARK 465 ARG B 43 REMARK 465 ASP B 44 REMARK 465 GLN B 45 REMARK 465 GLU B 46 REMARK 465 GLY B 47 REMARK 465 ASN B 48 REMARK 465 ALA B 49 REMARK 465 VAL B 50 REMARK 465 LYS B 51 REMARK 465 ASN B 52 REMARK 465 ILE B 708 REMARK 465 ARG B 709 REMARK 465 GLN B 710 REMARK 465 ARG B 711 REMARK 465 LYS B 712 REMARK 465 GLU B 713 REMARK 465 ARG B 714 REMARK 465 ARG B 715 REMARK 465 GLN B 716 REMARK 465 GLY B 717 REMARK 465 LYS B 718 REMARK 465 ARG B 719 REMARK 465 GLU B 720 REMARK 465 SER B 721 REMARK 465 ALA B 722 REMARK 465 LYS B 723 REMARK 465 SER B 724 REMARK 465 THR B 725 REMARK 465 ALA B 726 REMARK 465 ARG B 727 REMARK 465 LYS B 728 REMARK 465 LEU B 729 REMARK 465 LEU B 730 REMARK 465 ALA B 731 REMARK 465 ASN B 732 REMARK 465 THR B 733 REMARK 465 THR B 734 REMARK 465 LEU B 735 REMARK 465 SER B 736 REMARK 465 THR B 737 REMARK 465 SER B 738 REMARK 465 ALA B 739 REMARK 465 GLU B 740 REMARK 465 ARG B 741 REMARK 465 ASN B 742 REMARK 465 VAL B 743 REMARK 465 ALA B 744 REMARK 465 GLU B 745 REMARK 465 ASN B 746 REMARK 465 ALA B 747 REMARK 465 PHE B 748 REMARK 465 VAL B 749 REMARK 465 GLU B 750 REMARK 465 ASP B 751 REMARK 465 GLU B 752 REMARK 465 LEU B 753 REMARK 465 PHE B 754 REMARK 465 GLU B 755 REMARK 465 GLN B 756 REMARK 465 GLN B 757 REMARK 465 MSE B 758 REMARK 465 LYS B 759 REMARK 465 ASP B 760 REMARK 465 LYS B 761 REMARK 465 ARG B 762 REMARK 465 ASP B 763 REMARK 465 SER B 764 REMARK 465 ASP B 765 REMARK 465 GLU B 766 REMARK 465 VAL B 767 REMARK 465 ASP B 900 REMARK 465 LYS B 901 REMARK 465 ARG B 902 REMARK 465 LYS B 903 REMARK 465 GLN B 904 REMARK 465 GLU B 905 REMARK 465 THR B 906 REMARK 465 GLU B 907 REMARK 465 ASN B 908 REMARK 465 ARG B 984 REMARK 465 ASP B 985 REMARK 465 VAL B 986 REMARK 465 DC D 3 REMARK 465 DT D 4 REMARK 465 DG D 5 REMARK 465 DA D 6 REMARK 465 DG D 11 REMARK 465 DA D 12 REMARK 465 DG D 13 REMARK 465 DC D 14 REMARK 465 DA D 15 REMARK 465 DA D 16 REMARK 465 DA D 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 3 CG1 CG2 REMARK 470 TYR A 36 CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 38 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 53 OG REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 91 CZ NH1 NH2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 MSE A 769 CG SE CE REMARK 470 ASP A 770 CG OD1 OD2 REMARK 470 MSE A 771 CG SE CE REMARK 470 LYS A 773 CD CE NZ REMARK 470 GLU A 841 CD OE1 OE2 REMARK 470 LYS A 852 NZ REMARK 470 LYS A 870 CE NZ REMARK 470 LYS A 901 CG CD CE NZ REMARK 470 ARG A 902 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 903 CG CD CE NZ REMARK 470 GLU A 905 CG CD OE1 OE2 REMARK 470 THR A 906 OG1 CG2 REMARK 470 LYS A 916 NZ REMARK 470 ARG A 940 CZ NH1 NH2 REMARK 470 THR A 948 OG1 CG2 REMARK 470 VAL A 954 CG1 CG2 REMARK 470 ARG A 961 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 965 CG CD CE NZ REMARK 470 LEU A 968 CG CD1 CD2 REMARK 470 GLU A 973 CG CD OE1 OE2 REMARK 470 LYS A 974 CE NZ REMARK 470 GLU A 977 CG CD OE1 OE2 REMARK 470 ILE A 980 CG1 CG2 CD1 REMARK 470 LEU A 982 CG CD1 CD2 REMARK 470 SER B 0 OG REMARK 470 MSE B 1 CG SE CE REMARK 470 HIS B 4 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 54 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 60 NE CZ NH1 NH2 REMARK 470 VAL B 80 CG1 CG2 REMARK 470 ARG B 85 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 ASP B 770 CG OD1 OD2 REMARK 470 MSE B 771 SE CE REMARK 470 LYS B 773 CG CD CE NZ REMARK 470 GLU B 841 OE1 OE2 REMARK 470 LYS B 845 CG CD CE NZ REMARK 470 LYS B 852 CG CD CE NZ REMARK 470 ASN B 867 CG OD1 ND2 REMARK 470 LYS B 870 CG CD CE NZ REMARK 470 GLU B 883 CG CD OE1 OE2 REMARK 470 LYS B 888 CG CD CE NZ REMARK 470 GLN B 898 CG CD OE1 NE2 REMARK 470 PHE B 899 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 909 CG CD CE NZ REMARK 470 GLU B 911 CG CD OE1 OE2 REMARK 470 LYS B 912 CG CD CE NZ REMARK 470 LYS B 916 CG CD CE NZ REMARK 470 VAL B 919 CG1 CG2 REMARK 470 ASN B 920 CG OD1 ND2 REMARK 470 ASN B 921 CG OD1 ND2 REMARK 470 GLU B 922 CG CD OE1 OE2 REMARK 470 ASP B 928 CG OD1 OD2 REMARK 470 ARG B 940 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 957 CG CD1 CD2 REMARK 470 ARG B 961 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 965 CG CD CE NZ REMARK 470 GLU B 973 CG CD OE1 OE2 REMARK 470 ILE B 980 CG1 CG2 CD1 REMARK 470 ILE B 983 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 876 OP1 DT D 8 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 12 -6.42 -54.41 REMARK 500 TYR A 36 -6.46 -59.94 REMARK 500 GLN A 37 -101.79 -129.69 REMARK 500 MSE A 791 -80.76 -117.20 REMARK 500 ASN A 827 40.16 71.07 REMARK 500 LEU A 860 -60.97 -93.69 REMARK 500 SER A 863 -165.27 -172.14 REMARK 500 HIS A 945 13.13 -69.95 REMARK 500 MSE B 1 -158.49 68.33 REMARK 500 VAL B 3 107.03 -58.15 REMARK 500 SER B 5 14.61 58.97 REMARK 500 PRO B 81 150.82 -38.98 REMARK 500 MSE B 791 -112.21 -136.29 REMARK 500 ASN B 889 2.68 -69.71 REMARK 500 GLU B 922 62.07 60.21 REMARK 500 ASP B 926 -157.33 -71.89 REMARK 500 SER B 931 104.73 -49.58 REMARK 500 ASP B 946 129.71 -30.87 REMARK 500 PRO B 981 37.57 -62.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q0W RELATED DB: PDB REMARK 900 RELATED ID: 4Q0Z RELATED DB: PDB REMARK 900 RELATED ID: 4Q10 RELATED DB: PDB DBREF 4Q0R A 2 731 UNP P07276 RAD2_YEAST 2 111 DBREF 4Q0R A 732 986 UNP P07276 RAD2_YEAST 732 986 DBREF 4Q0R B 2 731 UNP P07276 RAD2_YEAST 2 111 DBREF 4Q0R B 732 986 UNP P07276 RAD2_YEAST 732 986 DBREF 4Q0R D 3 17 PDB 4Q0R 4Q0R 3 17 SEQADV 4Q0R SER A 0 UNP P07276 EXPRESSION TAG SEQADV 4Q0R MSE A 1 UNP P07276 EXPRESSION TAG SEQADV 4Q0R SER B 0 UNP P07276 EXPRESSION TAG SEQADV 4Q0R MSE B 1 UNP P07276 EXPRESSION TAG SEQRES 1 A 367 SER MSE GLY VAL HIS SER PHE TRP ASP ILE ALA GLY PRO SEQRES 2 A 367 THR ALA ARG PRO VAL ARG LEU GLU SER LEU GLU ASP LYS SEQRES 3 A 367 ARG MSE ALA VAL ASP ALA SER ILE TRP ILE TYR GLN PHE SEQRES 4 A 367 LEU LYS ALA VAL ARG ASP GLN GLU GLY ASN ALA VAL LYS SEQRES 5 A 367 ASN SER HIS ILE THR GLY PHE PHE ARG ARG ILE CYS LYS SEQRES 6 A 367 LEU LEU TYR PHE GLY ILE ARG PRO VAL PHE VAL PHE ASP SEQRES 7 A 367 GLY GLY VAL PRO VAL LEU LYS ARG GLU THR ILE ARG GLN SEQRES 8 A 367 ARG LYS GLU ARG ARG GLN GLY LYS ARG GLU SER ALA LYS SEQRES 9 A 367 SER THR ALA ARG LYS LEU LEU ALA ASN THR THR LEU SER SEQRES 10 A 367 THR SER ALA GLU ARG ASN VAL ALA GLU ASN ALA PHE VAL SEQRES 11 A 367 GLU ASP GLU LEU PHE GLU GLN GLN MSE LYS ASP LYS ARG SEQRES 12 A 367 ASP SER ASP GLU VAL THR MSE ASP MSE ILE LYS GLU VAL SEQRES 13 A 367 GLN GLU LEU LEU SER ARG PHE GLY ILE PRO TYR ILE THR SEQRES 14 A 367 ALA PRO MSE GLU ALA GLU ALA GLN CYS ALA GLU LEU LEU SEQRES 15 A 367 GLN LEU ASN LEU VAL ASP GLY ILE ILE THR ASP ASP SER SEQRES 16 A 367 ASP VAL PHE LEU PHE GLY GLY THR LYS ILE TYR LYS ASN SEQRES 17 A 367 MSE PHE HIS GLU LYS ASN TYR VAL GLU PHE TYR ASP ALA SEQRES 18 A 367 GLU SER ILE LEU LYS LEU LEU GLY LEU ASP ARG LYS ASN SEQRES 19 A 367 MSE ILE GLU LEU ALA GLN LEU LEU GLY SER ASP TYR THR SEQRES 20 A 367 ASN GLY LEU LYS GLY MSE GLY PRO VAL SER SER ILE GLU SEQRES 21 A 367 VAL ILE ALA GLU PHE GLY ASN LEU LYS ASN PHE LYS ASP SEQRES 22 A 367 TRP TYR ASN ASN GLY GLN PHE ASP LYS ARG LYS GLN GLU SEQRES 23 A 367 THR GLU ASN LYS PHE GLU LYS ASP LEU ARG LYS LYS LEU SEQRES 24 A 367 VAL ASN ASN GLU ILE ILE LEU ASP ASP ASP PHE PRO SER SEQRES 25 A 367 VAL MSE VAL TYR ASP ALA TYR MSE ARG PRO GLU VAL ASP SEQRES 26 A 367 HIS ASP THR THR PRO PHE VAL TRP GLY VAL PRO ASP LEU SEQRES 27 A 367 ASP MSE LEU ARG SER PHE MSE LYS THR GLN LEU GLY TRP SEQRES 28 A 367 PRO HIS GLU LYS SER ASP GLU ILE LEU ILE PRO LEU ILE SEQRES 29 A 367 ARG ASP VAL SEQRES 1 B 367 SER MSE GLY VAL HIS SER PHE TRP ASP ILE ALA GLY PRO SEQRES 2 B 367 THR ALA ARG PRO VAL ARG LEU GLU SER LEU GLU ASP LYS SEQRES 3 B 367 ARG MSE ALA VAL ASP ALA SER ILE TRP ILE TYR GLN PHE SEQRES 4 B 367 LEU LYS ALA VAL ARG ASP GLN GLU GLY ASN ALA VAL LYS SEQRES 5 B 367 ASN SER HIS ILE THR GLY PHE PHE ARG ARG ILE CYS LYS SEQRES 6 B 367 LEU LEU TYR PHE GLY ILE ARG PRO VAL PHE VAL PHE ASP SEQRES 7 B 367 GLY GLY VAL PRO VAL LEU LYS ARG GLU THR ILE ARG GLN SEQRES 8 B 367 ARG LYS GLU ARG ARG GLN GLY LYS ARG GLU SER ALA LYS SEQRES 9 B 367 SER THR ALA ARG LYS LEU LEU ALA ASN THR THR LEU SER SEQRES 10 B 367 THR SER ALA GLU ARG ASN VAL ALA GLU ASN ALA PHE VAL SEQRES 11 B 367 GLU ASP GLU LEU PHE GLU GLN GLN MSE LYS ASP LYS ARG SEQRES 12 B 367 ASP SER ASP GLU VAL THR MSE ASP MSE ILE LYS GLU VAL SEQRES 13 B 367 GLN GLU LEU LEU SER ARG PHE GLY ILE PRO TYR ILE THR SEQRES 14 B 367 ALA PRO MSE GLU ALA GLU ALA GLN CYS ALA GLU LEU LEU SEQRES 15 B 367 GLN LEU ASN LEU VAL ASP GLY ILE ILE THR ASP ASP SER SEQRES 16 B 367 ASP VAL PHE LEU PHE GLY GLY THR LYS ILE TYR LYS ASN SEQRES 17 B 367 MSE PHE HIS GLU LYS ASN TYR VAL GLU PHE TYR ASP ALA SEQRES 18 B 367 GLU SER ILE LEU LYS LEU LEU GLY LEU ASP ARG LYS ASN SEQRES 19 B 367 MSE ILE GLU LEU ALA GLN LEU LEU GLY SER ASP TYR THR SEQRES 20 B 367 ASN GLY LEU LYS GLY MSE GLY PRO VAL SER SER ILE GLU SEQRES 21 B 367 VAL ILE ALA GLU PHE GLY ASN LEU LYS ASN PHE LYS ASP SEQRES 22 B 367 TRP TYR ASN ASN GLY GLN PHE ASP LYS ARG LYS GLN GLU SEQRES 23 B 367 THR GLU ASN LYS PHE GLU LYS ASP LEU ARG LYS LYS LEU SEQRES 24 B 367 VAL ASN ASN GLU ILE ILE LEU ASP ASP ASP PHE PRO SER SEQRES 25 B 367 VAL MSE VAL TYR ASP ALA TYR MSE ARG PRO GLU VAL ASP SEQRES 26 B 367 HIS ASP THR THR PRO PHE VAL TRP GLY VAL PRO ASP LEU SEQRES 27 B 367 ASP MSE LEU ARG SER PHE MSE LYS THR GLN LEU GLY TRP SEQRES 28 B 367 PRO HIS GLU LYS SER ASP GLU ILE LEU ILE PRO LEU ILE SEQRES 29 B 367 ARG ASP VAL SEQRES 1 D 15 DC DT DG DA DG DT DC DA DG DA DG DC DA SEQRES 2 D 15 DA DA MODRES 4Q0R MSE A 1 MET SELENOMETHIONINE MODRES 4Q0R MSE A 27 MET SELENOMETHIONINE MODRES 4Q0R MSE A 769 MET SELENOMETHIONINE MODRES 4Q0R MSE A 771 MET SELENOMETHIONINE MODRES 4Q0R MSE A 791 MET SELENOMETHIONINE MODRES 4Q0R MSE A 828 MET SELENOMETHIONINE MODRES 4Q0R MSE A 854 MET SELENOMETHIONINE MODRES 4Q0R MSE A 872 MET SELENOMETHIONINE MODRES 4Q0R MSE A 933 MET SELENOMETHIONINE MODRES 4Q0R MSE A 939 MET SELENOMETHIONINE MODRES 4Q0R MSE A 959 MET SELENOMETHIONINE MODRES 4Q0R MSE A 964 MET SELENOMETHIONINE MODRES 4Q0R MSE B 1 MET SELENOMETHIONINE MODRES 4Q0R MSE B 27 MET SELENOMETHIONINE MODRES 4Q0R MSE B 769 MET SELENOMETHIONINE MODRES 4Q0R MSE B 771 MET SELENOMETHIONINE MODRES 4Q0R MSE B 791 MET SELENOMETHIONINE MODRES 4Q0R MSE B 828 MET SELENOMETHIONINE MODRES 4Q0R MSE B 854 MET SELENOMETHIONINE MODRES 4Q0R MSE B 872 MET SELENOMETHIONINE MODRES 4Q0R MSE B 933 MET SELENOMETHIONINE MODRES 4Q0R MSE B 939 MET SELENOMETHIONINE MODRES 4Q0R MSE B 959 MET SELENOMETHIONINE MODRES 4Q0R MSE B 964 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 27 8 HET MSE A 769 5 HET MSE A 771 5 HET MSE A 791 8 HET MSE A 828 8 HET MSE A 854 8 HET MSE A 872 8 HET MSE A 933 8 HET MSE A 939 8 HET MSE A 959 8 HET MSE A 964 8 HET MSE B 1 5 HET MSE B 27 8 HET MSE B 769 8 HET MSE B 771 6 HET MSE B 791 8 HET MSE B 828 8 HET MSE B 854 8 HET MSE B 872 8 HET MSE B 933 8 HET MSE B 939 8 HET MSE B 959 8 HET MSE B 964 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 24(C5 H11 N O2 SE) FORMUL 4 HOH *79(H2 O) HELIX 1 1 SER A 5 GLY A 11 1 7 HELIX 2 2 PRO A 12 ALA A 14 5 3 HELIX 3 3 GLU A 20 GLU A 23 5 4 HELIX 4 4 ALA A 31 TYR A 36 1 6 HELIX 5 5 HIS A 54 PHE A 68 1 15 HELIX 6 6 PRO A 81 LYS A 92 1 12 HELIX 7 7 ASP A 770 PHE A 782 1 13 HELIX 8 8 GLU A 792 LEU A 803 1 12 HELIX 9 9 SER A 814 PHE A 819 1 6 HELIX 10 10 ALA A 840 GLY A 848 1 9 HELIX 11 11 ASP A 850 GLY A 862 1 13 HELIX 12 12 GLY A 873 GLY A 885 1 13 HELIX 13 13 ASN A 886 GLY A 897 1 12 HELIX 14 14 ARG A 902 THR A 906 5 5 HELIX 15 15 ASN A 908 ASN A 921 1 14 HELIX 16 16 SER A 931 ARG A 940 1 10 HELIX 17 17 ASP A 956 GLY A 969 1 14 HELIX 18 18 PRO A 971 ILE A 980 1 10 HELIX 19 19 SER B 5 GLY B 11 1 7 HELIX 20 20 PRO B 12 ALA B 14 5 3 HELIX 21 21 GLU B 20 LEU B 22 5 3 HELIX 22 22 ALA B 31 TRP B 34 5 4 HELIX 23 23 HIS B 54 PHE B 68 1 15 HELIX 24 24 PRO B 81 THR B 87 1 7 HELIX 25 25 MSE B 769 PHE B 782 1 14 HELIX 26 26 GLU B 792 LEU B 803 1 12 HELIX 27 27 SER B 814 PHE B 819 1 6 HELIX 28 28 ALA B 840 LEU B 847 1 8 HELIX 29 29 ASP B 850 GLY B 862 1 13 HELIX 30 30 GLY B 873 GLY B 885 1 13 HELIX 31 31 LEU B 887 GLY B 897 1 11 HELIX 32 32 PHE B 910 GLU B 922 1 13 HELIX 33 33 SER B 931 ARG B 940 1 10 HELIX 34 34 ASP B 956 GLY B 969 1 14 HELIX 35 35 PRO B 971 ILE B 980 1 10 SHEET 1 A 7 ARG A 15 ARG A 18 0 SHEET 2 A 7 TYR A 834 ASP A 839 -1 O VAL A 835 N VAL A 17 SHEET 3 A 7 LYS A 823 LYS A 826 -1 N LYS A 826 O GLU A 836 SHEET 4 A 7 GLY A 808 ILE A 810 1 N ILE A 809 O TYR A 825 SHEET 5 A 7 ARG A 26 ASP A 30 1 N ALA A 28 O ILE A 810 SHEET 6 A 7 ARG A 71 PHE A 76 1 O VAL A 73 N VAL A 29 SHEET 7 A 7 TYR A 786 THR A 788 1 O ILE A 787 N PHE A 74 SHEET 1 B 7 ARG B 15 ARG B 18 0 SHEET 2 B 7 TYR B 834 ASP B 839 -1 O VAL B 835 N VAL B 17 SHEET 3 B 7 LYS B 823 LYS B 826 -1 N ILE B 824 O TYR B 838 SHEET 4 B 7 GLY B 808 ILE B 810 1 N ILE B 809 O TYR B 825 SHEET 5 B 7 ARG B 26 VAL B 29 1 N ALA B 28 O ILE B 810 SHEET 6 B 7 ARG B 71 PHE B 76 1 O VAL B 75 N VAL B 29 SHEET 7 B 7 TYR B 786 THR B 788 1 O ILE B 787 N PHE B 74 LINK C MSE A 1 N GLY A 2 1555 1555 1.33 LINK C ARG A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N ALA A 28 1555 1555 1.33 LINK C THR A 768 N MSE A 769 1555 1555 1.33 LINK C MSE A 769 N ASP A 770 1555 1555 1.33 LINK C ASP A 770 N MSE A 771 1555 1555 1.33 LINK C MSE A 771 N ILE A 772 1555 1555 1.33 LINK C PRO A 790 N MSE A 791 1555 1555 1.33 LINK C MSE A 791 N GLU A 792 1555 1555 1.32 LINK C ASN A 827 N MSE A 828 1555 1555 1.33 LINK C MSE A 828 N PHE A 829 1555 1555 1.33 LINK C ASN A 853 N MSE A 854 1555 1555 1.33 LINK C MSE A 854 N ILE A 855 1555 1555 1.34 LINK C GLY A 871 N MSE A 872 1555 1555 1.33 LINK C MSE A 872 N GLY A 873 1555 1555 1.33 LINK C VAL A 932 N MSE A 933 1555 1555 1.33 LINK C MSE A 933 N VAL A 934 1555 1555 1.34 LINK C TYR A 938 N MSE A 939 1555 1555 1.33 LINK C MSE A 939 N ARG A 940 1555 1555 1.32 LINK C ASP A 958 N MSE A 959 1555 1555 1.33 LINK C MSE A 959 N LEU A 960 1555 1555 1.33 LINK C PHE A 963 N MSE A 964 1555 1555 1.33 LINK C MSE A 964 N LYS A 965 1555 1555 1.33 LINK C SER B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N GLY B 2 1555 1555 1.33 LINK C ARG B 26 N MSE B 27 1555 1555 1.33 LINK C MSE B 27 N ALA B 28 1555 1555 1.33 LINK C THR B 768 N MSE B 769 1555 1555 1.33 LINK C MSE B 769 N ASP B 770 1555 1555 1.33 LINK C ASP B 770 N MSE B 771 1555 1555 1.33 LINK C MSE B 771 N ILE B 772 1555 1555 1.34 LINK C PRO B 790 N MSE B 791 1555 1555 1.33 LINK C MSE B 791 N GLU B 792 1555 1555 1.33 LINK C ASN B 827 N MSE B 828 1555 1555 1.33 LINK C MSE B 828 N PHE B 829 1555 1555 1.33 LINK C ASN B 853 N MSE B 854 1555 1555 1.33 LINK C MSE B 854 N ILE B 855 1555 1555 1.33 LINK C GLY B 871 N MSE B 872 1555 1555 1.33 LINK C MSE B 872 N GLY B 873 1555 1555 1.33 LINK C VAL B 932 N MSE B 933 1555 1555 1.33 LINK C MSE B 933 N VAL B 934 1555 1555 1.33 LINK C TYR B 938 N MSE B 939 1555 1555 1.33 LINK C MSE B 939 N ARG B 940 1555 1555 1.32 LINK C ASP B 958 N MSE B 959 1555 1555 1.33 LINK C MSE B 959 N LEU B 960 1555 1555 1.33 LINK C PHE B 963 N MSE B 964 1555 1555 1.33 LINK C MSE B 964 N LYS B 965 1555 1555 1.33 CISPEP 1 PHE A 929 PRO A 930 0 1.63 CISPEP 2 PHE B 929 PRO B 930 0 -4.65 CRYST1 94.085 94.085 155.264 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010629 0.006136 0.000000 0.00000 SCALE2 0.000000 0.012273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006441 0.00000 HETATM 1 N MSE A 1 15.041 29.493 181.808 1.00 46.07 N HETATM 2 CA MSE A 1 15.620 29.394 180.457 1.00 45.19 C HETATM 3 C MSE A 1 15.196 30.524 179.504 1.00 44.17 C HETATM 4 O MSE A 1 14.488 31.474 179.881 1.00 43.63 O HETATM 5 CB MSE A 1 15.249 28.052 179.797 1.00 45.28 C HETATM 6 CG MSE A 1 15.347 26.822 180.683 1.00 47.26 C HETATM 7 SE MSE A 1 13.578 26.273 181.344 1.00 55.37 SE HETATM 8 CE MSE A 1 13.605 26.976 183.208 1.00 49.05 C