PDB Short entry for 4Q29 HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 07-APR-14 4Q29 TITLE ENSEMBLE REFINEMENT OF PLU4264 PROTEIN FROM PHOTORHABDUS LUMINESCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLU4264 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS LUMINESCENS SUBSP. LAUMONDII; SOURCE 3 ORGANISM_TAXID: 243265; SOURCE 4 STRAIN: TT01; SOURCE 5 GENE: PLU4264; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, ENZYME DISCOVERY KEYWDS 2 FOR NATURAL PRODUCT BIOSYNTHESIS, NATPRO, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, CUPIN, UNKNOWN FUNCTION, PSI-BIOLOGY EXPDTA X-RAY DIFFRACTION NUMMDL 20 AUTHOR F.WANG,K.MICHALSKA,H.LI,R.JEDRZEJCZAK,G.BABNIGG,C.A.BINGMAN, AUTHOR 2 R.YENNAMALLI,S.WEERTH,M.D.MILLER,M.G.THOMAS,A.JOACHIMIAK, AUTHOR 3 G.N.PHILLIPS JR.,ENZYME DISCOVERY FOR NATURAL PRODUCT BIOSYNTHESIS AUTHOR 4 (NATPRO),MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 11-FEB-15 4Q29 1 JRNL REVDAT 2 12-NOV-14 4Q29 1 JRNL REVDAT 1 07-MAY-14 4Q29 0 JRNL AUTH R.S.WEERTH,K.MICHALSKA,C.A.BINGMAN,R.M.YENNAMALLI,H.LI, JRNL AUTH 2 R.JEDRZEJCZAK,F.WANG,G.BABNIGG,A.JOACHIMIAK,M.G.THOMAS, JRNL AUTH 3 G.N.PHILLIPS JRNL TITL STRUCTURE OF A CUPIN PROTEIN PLU4264 FROM PHOTORHABDUS JRNL TITL 2 LUMINESCENS SUBSP. LAUMONDII TTO1 AT 1.35 ANGSTROM JRNL TITL 3 RESOLUTION. JRNL REF PROTEINS V. 83 383 2015 JRNL REFN ISSN 0887-3585 JRNL PMID 25354690 JRNL DOI 10.1002/PROT.24705 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.ENSEMBLE_REFINEMENT: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 75927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.460 REMARK 3 FREE R VALUE TEST SET COUNT : 1111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9019 - 2.6975 0.99 9601 149 0.1451 0.1656 REMARK 3 2 2.6975 - 2.1415 1.00 9404 154 0.1083 0.1443 REMARK 3 3 2.1415 - 1.8709 1.00 9404 127 0.1064 0.1447 REMARK 3 4 1.8709 - 1.6999 1.00 9321 143 0.0997 0.1321 REMARK 3 5 1.6999 - 1.5780 1.00 9303 123 0.1050 0.1233 REMARK 3 6 1.5780 - 1.4850 1.00 9295 135 0.1219 0.1511 REMARK 3 7 1.4850 - 1.4107 1.00 9255 155 0.1591 0.1904 REMARK 3 8 1.4107 - 1.3493 0.99 9233 125 0.1897 0.2327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 NULL REMARK 3 ANGLE : 2.097 NULL REMARK 3 CHIRALITY : 0.121 NULL REMARK 3 PLANARITY : 0.011 NULL REMARK 3 DIHEDRAL : 17.180 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-14. REMARK 100 THE RCSB ID CODE IS RCSB085512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.349 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, MLPHARE, DM, ARP/WARP, COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LI2SO4, 0.1 M TRIS/HCL 8.5, 25% REMARK 280 PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.92150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.92150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.86900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.84350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.86900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.84350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.92150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.86900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.84350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.92150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.86900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.84350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 MSE A 1 REMARK 465 1 HIS A 123 REMARK 465 1 HIS A 124 REMARK 465 1 HIS A 125 REMARK 465 1 HIS A 126 REMARK 465 1 HIS A 127 REMARK 465 1 HIS A 128 REMARK 465 1 MSE B 1 REMARK 465 1 ASP B 122 REMARK 465 1 HIS B 123 REMARK 465 1 HIS B 124 REMARK 465 1 HIS B 125 REMARK 465 1 HIS B 126 REMARK 465 1 HIS B 127 REMARK 465 1 HIS B 128 REMARK 465 2 MSE A 1 REMARK 465 2 HIS A 123 REMARK 465 2 HIS A 124 REMARK 465 2 HIS A 125 REMARK 465 2 HIS A 126 REMARK 465 2 HIS A 127 REMARK 465 2 HIS A 128 REMARK 465 2 MSE B 1 REMARK 465 2 ASP B 122 REMARK 465 2 HIS B 123 REMARK 465 2 HIS B 124 REMARK 465 2 HIS B 125 REMARK 465 2 HIS B 126 REMARK 465 2 HIS B 127 REMARK 465 2 HIS B 128 REMARK 465 3 MSE A 1 REMARK 465 3 HIS A 123 REMARK 465 3 HIS A 124 REMARK 465 3 HIS A 125 REMARK 465 3 HIS A 126 REMARK 465 3 HIS A 127 REMARK 465 3 HIS A 128 REMARK 465 3 MSE B 1 REMARK 465 3 ASP B 122 REMARK 465 3 HIS B 123 REMARK 465 3 HIS B 124 REMARK 465 3 HIS B 125 REMARK 465 3 HIS B 126 REMARK 465 3 HIS B 127 REMARK 465 3 HIS B 128 REMARK 465 4 MSE A 1 REMARK 465 4 HIS A 123 REMARK 465 4 HIS A 124 REMARK 465 4 HIS A 125 REMARK 465 4 HIS A 126 REMARK 465 4 HIS A 127 REMARK 465 4 HIS A 128 REMARK 465 4 MSE B 1 REMARK 465 4 ASP B 122 REMARK 465 4 HIS B 123 REMARK 465 4 HIS B 124 REMARK 465 4 HIS B 125 REMARK 465 4 HIS B 126 REMARK 465 4 HIS B 127 REMARK 465 4 HIS B 128 REMARK 465 5 MSE A 1 REMARK 465 5 HIS A 123 REMARK 465 5 HIS A 124 REMARK 465 5 HIS A 125 REMARK 465 5 HIS A 126 REMARK 465 5 HIS A 127 REMARK 465 5 HIS A 128 REMARK 465 5 MSE B 1 REMARK 465 5 ASP B 122 REMARK 465 5 HIS B 123 REMARK 465 5 HIS B 124 REMARK 465 5 HIS B 125 REMARK 465 5 HIS B 126 REMARK 465 5 HIS B 127 REMARK 465 5 HIS B 128 REMARK 465 6 MSE A 1 REMARK 465 6 HIS A 123 REMARK 465 6 HIS A 124 REMARK 465 6 HIS A 125 REMARK 465 6 HIS A 126 REMARK 465 6 HIS A 127 REMARK 465 6 HIS A 128 REMARK 465 6 MSE B 1 REMARK 465 6 ASP B 122 REMARK 465 6 HIS B 123 REMARK 465 6 HIS B 124 REMARK 465 6 HIS B 125 REMARK 465 6 HIS B 126 REMARK 465 6 HIS B 127 REMARK 465 6 HIS B 128 REMARK 465 7 MSE A 1 REMARK 465 7 HIS A 123 REMARK 465 7 HIS A 124 REMARK 465 7 HIS A 125 REMARK 465 7 HIS A 126 REMARK 465 7 HIS A 127 REMARK 465 7 HIS A 128 REMARK 465 7 MSE B 1 REMARK 465 7 ASP B 122 REMARK 465 7 HIS B 123 REMARK 465 7 HIS B 124 REMARK 465 7 HIS B 125 REMARK 465 7 HIS B 126 REMARK 465 7 HIS B 127 REMARK 465 7 HIS B 128 REMARK 465 8 MSE A 1 REMARK 465 8 HIS A 123 REMARK 465 8 HIS A 124 REMARK 465 8 HIS A 125 REMARK 465 8 HIS A 126 REMARK 465 8 HIS A 127 REMARK 465 8 HIS A 128 REMARK 465 8 MSE B 1 REMARK 465 8 ASP B 122 REMARK 465 8 HIS B 123 REMARK 465 8 HIS B 124 REMARK 465 8 HIS B 125 REMARK 465 8 HIS B 126 REMARK 465 8 HIS B 127 REMARK 465 8 HIS B 128 REMARK 465 9 MSE A 1 REMARK 465 9 HIS A 123 REMARK 465 9 HIS A 124 REMARK 465 9 HIS A 125 REMARK 465 9 HIS A 126 REMARK 465 9 HIS A 127 REMARK 465 9 HIS A 128 REMARK 465 9 MSE B 1 REMARK 465 9 ASP B 122 REMARK 465 9 HIS B 123 REMARK 465 9 HIS B 124 REMARK 465 9 HIS B 125 REMARK 465 9 HIS B 126 REMARK 465 9 HIS B 127 REMARK 465 9 HIS B 128 REMARK 465 10 MSE A 1 REMARK 465 10 HIS A 123 REMARK 465 10 HIS A 124 REMARK 465 10 HIS A 125 REMARK 465 10 HIS A 126 REMARK 465 10 HIS A 127 REMARK 465 10 HIS A 128 REMARK 465 10 MSE B 1 REMARK 465 10 ASP B 122 REMARK 465 10 HIS B 123 REMARK 465 10 HIS B 124 REMARK 465 10 HIS B 125 REMARK 465 10 HIS B 126 REMARK 465 10 HIS B 127 REMARK 465 10 HIS B 128 REMARK 465 11 MSE A 1 REMARK 465 11 HIS A 123 REMARK 465 11 HIS A 124 REMARK 465 11 HIS A 125 REMARK 465 11 HIS A 126 REMARK 465 11 HIS A 127 REMARK 465 11 HIS A 128 REMARK 465 11 MSE B 1 REMARK 465 11 ASP B 122 REMARK 465 11 HIS B 123 REMARK 465 11 HIS B 124 REMARK 465 11 HIS B 125 REMARK 465 11 HIS B 126 REMARK 465 11 HIS B 127 REMARK 465 11 HIS B 128 REMARK 465 12 MSE A 1 REMARK 465 12 HIS A 123 REMARK 465 12 HIS A 124 REMARK 465 12 HIS A 125 REMARK 465 12 HIS A 126 REMARK 465 12 HIS A 127 REMARK 465 12 HIS A 128 REMARK 465 12 MSE B 1 REMARK 465 12 ASP B 122 REMARK 465 12 HIS B 123 REMARK 465 12 HIS B 124 REMARK 465 12 HIS B 125 REMARK 465 12 HIS B 126 REMARK 465 12 HIS B 127 REMARK 465 12 HIS B 128 REMARK 465 13 MSE A 1 REMARK 465 13 HIS A 123 REMARK 465 13 HIS A 124 REMARK 465 13 HIS A 125 REMARK 465 13 HIS A 126 REMARK 465 13 HIS A 127 REMARK 465 13 HIS A 128 REMARK 465 13 MSE B 1 REMARK 465 13 ASP B 122 REMARK 465 13 HIS B 123 REMARK 465 13 HIS B 124 REMARK 465 13 HIS B 125 REMARK 465 13 HIS B 126 REMARK 465 13 HIS B 127 REMARK 465 13 HIS B 128 REMARK 465 14 MSE A 1 REMARK 465 14 HIS A 123 REMARK 465 14 HIS A 124 REMARK 465 14 HIS A 125 REMARK 465 14 HIS A 126 REMARK 465 14 HIS A 127 REMARK 465 14 HIS A 128 REMARK 465 14 MSE B 1 REMARK 465 14 ASP B 122 REMARK 465 14 HIS B 123 REMARK 465 14 HIS B 124 REMARK 465 14 HIS B 125 REMARK 465 14 HIS B 126 REMARK 465 14 HIS B 127 REMARK 465 14 HIS B 128 REMARK 465 15 MSE A 1 REMARK 465 15 HIS A 123 REMARK 465 15 HIS A 124 REMARK 465 15 HIS A 125 REMARK 465 15 HIS A 126 REMARK 465 15 HIS A 127 REMARK 465 15 HIS A 128 REMARK 465 15 MSE B 1 REMARK 465 15 ASP B 122 REMARK 465 15 HIS B 123 REMARK 465 15 HIS B 124 REMARK 465 15 HIS B 125 REMARK 465 15 HIS B 126 REMARK 465 15 HIS B 127 REMARK 465 15 HIS B 128 REMARK 465 16 MSE A 1 REMARK 465 16 HIS A 123 REMARK 465 16 HIS A 124 REMARK 465 16 HIS A 125 REMARK 465 16 HIS A 126 REMARK 465 16 HIS A 127 REMARK 465 16 HIS A 128 REMARK 465 16 MSE B 1 REMARK 465 16 ASP B 122 REMARK 465 16 HIS B 123 REMARK 465 16 HIS B 124 REMARK 465 16 HIS B 125 REMARK 465 16 HIS B 126 REMARK 465 16 HIS B 127 REMARK 465 16 HIS B 128 REMARK 465 17 MSE A 1 REMARK 465 17 HIS A 123 REMARK 465 17 HIS A 124 REMARK 465 17 HIS A 125 REMARK 465 17 HIS A 126 REMARK 465 17 HIS A 127 REMARK 465 17 HIS A 128 REMARK 465 17 MSE B 1 REMARK 465 17 ASP B 122 REMARK 465 17 HIS B 123 REMARK 465 17 HIS B 124 REMARK 465 17 HIS B 125 REMARK 465 17 HIS B 126 REMARK 465 17 HIS B 127 REMARK 465 17 HIS B 128 REMARK 465 18 MSE A 1 REMARK 465 18 HIS A 123 REMARK 465 18 HIS A 124 REMARK 465 18 HIS A 125 REMARK 465 18 HIS A 126 REMARK 465 18 HIS A 127 REMARK 465 18 HIS A 128 REMARK 465 18 MSE B 1 REMARK 465 18 ASP B 122 REMARK 465 18 HIS B 123 REMARK 465 18 HIS B 124 REMARK 465 18 HIS B 125 REMARK 465 18 HIS B 126 REMARK 465 18 HIS B 127 REMARK 465 18 HIS B 128 REMARK 465 19 MSE A 1 REMARK 465 19 HIS A 123 REMARK 465 19 HIS A 124 REMARK 465 19 HIS A 125 REMARK 465 19 HIS A 126 REMARK 465 19 HIS A 127 REMARK 465 19 HIS A 128 REMARK 465 19 MSE B 1 REMARK 465 19 ASP B 122 REMARK 465 19 HIS B 123 REMARK 465 19 HIS B 124 REMARK 465 19 HIS B 125 REMARK 465 19 HIS B 126 REMARK 465 19 HIS B 127 REMARK 465 19 HIS B 128 REMARK 465 20 MSE A 1 REMARK 465 20 HIS A 123 REMARK 465 20 HIS A 124 REMARK 465 20 HIS A 125 REMARK 465 20 HIS A 126 REMARK 465 20 HIS A 127 REMARK 465 20 HIS A 128 REMARK 465 20 MSE B 1 REMARK 465 20 ASP B 122 REMARK 465 20 HIS B 123 REMARK 465 20 HIS B 124 REMARK 465 20 HIS B 125 REMARK 465 20 HIS B 126 REMARK 465 20 HIS B 127 REMARK 465 20 HIS B 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLN B 62 CG GLN B 62 CD -0.169 REMARK 500 2 GLU A 54 CB GLU A 54 CG 0.136 REMARK 500 3 THR A 45 CB THR A 45 CG2 -0.207 REMARK 500 4 GLU B 98 CB GLU B 98 CG 0.187 REMARK 500 4 GLU B 98 CG GLU B 98 CD 0.193 REMARK 500 5 GLU A 44 CD GLU A 44 OE2 0.073 REMARK 500 5 GLU A 54 CD GLU A 54 OE2 0.107 REMARK 500 5 TYR B 17 CE2 TYR B 17 CD2 -0.126 REMARK 500 5 ARG B 23 CG ARG B 23 CD 0.154 REMARK 500 5 ARG B 23 CZ ARG B 23 NH2 -0.112 REMARK 500 5 SER B 88 N SER B 88 CA 0.124 REMARK 500 8 GLN B 62 CG GLN B 62 CD 0.169 REMARK 500 9 GLU A 120 CB GLU A 120 CG 0.156 REMARK 500 9 GLN B 62 CB GLN B 62 CG -0.275 REMARK 500 10 GLN A 97 CB GLN A 97 CG 0.181 REMARK 500 10 ASN B 3 CB ASN B 3 CG 0.176 REMARK 500 10 ARG B 23 CG ARG B 23 CD 0.164 REMARK 500 10 GLU B 44 CG GLU B 44 CD -0.107 REMARK 500 11 ASP B 11 CG ASP B 11 OD2 0.206 REMARK 500 12 GLU A 98 CB GLU A 98 CG 0.151 REMARK 500 12 GLU A 98 CG GLU A 98 CD 0.091 REMARK 500 12 GLU A 98 CD GLU A 98 OE2 0.130 REMARK 500 14 TYR A 17 CE2 TYR A 17 CD2 0.104 REMARK 500 15 GLU A 28 CB GLU A 28 CG 0.124 REMARK 500 15 THR A 45 CB THR A 45 CG2 -0.424 REMARK 500 15 GLU A 89 N GLU A 89 CA 0.154 REMARK 500 16 GLU A 98 CG GLU A 98 CD -0.125 REMARK 500 16 SER B 12 CA SER B 12 CB 0.105 REMARK 500 17 GLU A 44 CB GLU A 44 CG -0.127 REMARK 500 18 SER B 12 CA SER B 12 CB 0.141 REMARK 500 18 SER B 12 CB SER B 12 OG 0.122 REMARK 500 19 MSE B 13 CB MSE B 13 CG 0.310 REMARK 500 19 GLU B 44 CB GLU B 44 CG 0.138 REMARK 500 20 TYR A 17 CZ TYR A 17 CE2 -0.081 REMARK 500 20 GLU A 98 CG GLU A 98 CD -0.185 REMARK 500 20 GLU A 98 CD GLU A 98 OE2 -0.124 REMARK 500 20 SER B 12 CA SER B 12 CB 0.100 REMARK 500 20 SER B 12 CB SER B 12 OG 0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 2 PHE A 48 CB - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 2 PHE A 48 CB - CG - CD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 2 SER A 88 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 2 ASP A 108 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 2 ARG B 68 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 3 THR A 45 CB - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 3 THR A 45 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 3 ARG B 23 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 3 LEU B 57 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 3 LEU B 57 CB - CG - CD1 ANGL. DEV. = -12.2 DEGREES REMARK 500 3 ARG B 68 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 3 ARG B 118 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 4 ILE A 4 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 4 GLN B 97 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 4 GLU B 98 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 5 ASP A 18 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 5 ASP A 20 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 5 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 5 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 5 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 5 ASP A 108 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 5 ASP B 20 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 5 ARG B 23 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 5 ARG B 23 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 5 ARG B 68 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 5 ASP B 99 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 6 THR A 45 OG1 - CB - CG2 ANGL. DEV. = 15.1 DEGREES REMARK 500 6 ARG B 23 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 LEU B 57 CB - CG - CD1 ANGL. DEV. = 17.3 DEGREES REMARK 500 6 LEU B 57 CB - CG - CD2 ANGL. DEV. = -18.8 DEGREES REMARK 500 6 ARG B 118 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 7 LYS B 7 CD - CE - NZ ANGL. DEV. = -15.5 DEGREES REMARK 500 8 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 8 MSE B 2 CB - CG - SE ANGL. DEV. = -25.5 DEGREES REMARK 500 9 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 9 GLN B 62 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 10 ASP A 20 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 10 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 10 ARG A 49 CG - CD - NE ANGL. DEV. = 13.0 DEGREES REMARK 500 10 ASP A 108 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 10 GLU B 44 OE1 - CD - OE2 ANGL. DEV. = 8.6 DEGREES REMARK 500 11 HIS A 52 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 11 ASP B 11 CB - CG - OD1 ANGL. DEV. = -14.6 DEGREES REMARK 500 11 ASP B 11 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 11 LEU B 57 CB - CG - CD1 ANGL. DEV. = 16.0 DEGREES REMARK 500 12 MSE A 2 CG - SE - CE ANGL. DEV. = -19.9 DEGREES REMARK 500 12 GLU A 98 CG - CD - OE1 ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 93 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 71 -24.46 72.55 REMARK 500 1 LYS A 78 119.67 -19.53 REMARK 500 1 GLU B 54 116.58 -164.09 REMARK 500 1 ASN B 70 -126.14 48.31 REMARK 500 1 ASP B 87 16.31 83.84 REMARK 500 2 ILE A 4 -37.26 126.52 REMARK 500 2 ASN A 70 73.61 35.05 REMARK 500 2 ASP A 71 -20.43 78.35 REMARK 500 2 GLU A 89 110.34 57.40 REMARK 500 2 HIS B 52 -177.07 -171.40 REMARK 500 2 ASN B 70 -105.04 60.68 REMARK 500 3 ASN A 70 -41.53 54.42 REMARK 500 3 ASP A 71 18.37 -175.71 REMARK 500 3 SER B 47 -153.78 -95.33 REMARK 500 3 ASN B 70 -123.33 42.23 REMARK 500 3 ASP B 108 -168.26 -167.10 REMARK 500 4 ASN A 53 -55.25 -29.82 REMARK 500 4 ASN A 70 -103.71 55.50 REMARK 500 4 GLN A 121 1.59 -63.92 REMARK 500 4 ASN B 3 137.16 -38.62 REMARK 500 4 GLU B 54 132.48 163.26 REMARK 500 4 ASN B 70 -121.57 59.09 REMARK 500 4 LYS B 78 124.51 -39.74 REMARK 500 4 ASP B 87 37.22 73.31 REMARK 500 4 GLN B 97 33.40 -61.63 REMARK 500 5 ASN A 70 -125.33 61.89 REMARK 500 5 TYR B 17 48.95 36.50 REMARK 500 5 SER B 51 115.05 -162.40 REMARK 500 5 ASN B 70 -119.95 45.44 REMARK 500 5 ASP B 87 -125.05 90.91 REMARK 500 5 SER B 88 144.82 68.54 REMARK 500 6 TYR A 17 19.93 56.32 REMARK 500 6 HIS A 52 150.70 175.51 REMARK 500 6 ASN A 53 -60.17 -26.00 REMARK 500 6 ASN A 70 -120.54 48.97 REMARK 500 6 ASP A 87 -7.66 76.72 REMARK 500 6 GLU A 89 3.63 -66.85 REMARK 500 6 HIS A 90 144.18 -31.91 REMARK 500 6 GLN A 121 62.09 -69.07 REMARK 500 6 HIS B 52 137.43 -170.25 REMARK 500 6 GLU B 54 145.59 -177.03 REMARK 500 6 ASN B 70 -114.36 60.65 REMARK 500 6 ASP B 87 -23.34 92.15 REMARK 500 6 SER B 88 112.18 -20.74 REMARK 500 6 ASP B 99 154.71 -46.99 REMARK 500 6 ASP B 108 -167.45 -162.40 REMARK 500 7 HIS A 50 -154.86 -124.97 REMARK 500 7 ASN A 70 -131.54 57.69 REMARK 500 7 LYS A 78 122.38 -37.37 REMARK 500 7 ILE B 4 -39.76 79.23 REMARK 500 REMARK 500 THIS ENTRY HAS 180 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MSE A 2 ASN A 3 4 135.37 REMARK 500 MSE B 2 ASN B 3 6 147.26 REMARK 500 MSE B 2 ASN B 3 9 138.44 REMARK 500 MSE B 2 ASN B 3 12 148.47 REMARK 500 HIS A 50 SER A 51 14 -136.58 REMARK 500 SER A 51 HIS A 52 14 -143.12 REMARK 500 ASP A 71 GLU A 72 14 146.12 REMARK 500 LEU A 30 ASN A 31 17 -147.15 REMARK 500 MSE A 2 ASN A 3 18 144.18 REMARK 500 SER A 47 PHE A 48 20 -124.07 REMARK 500 PHE A 48 ARG A 49 20 -145.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ASN A 64 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 1 ASN A 96 20.0 L L OUTSIDE RANGE REMARK 500 2 ASN A 70 23.5 L L OUTSIDE RANGE REMARK 500 2 SER A 88 21.0 L L OUTSIDE RANGE REMARK 500 3 ASN A 70 23.6 L L OUTSIDE RANGE REMARK 500 5 SER A 88 21.9 L L OUTSIDE RANGE REMARK 500 6 HIS A 90 24.7 L L OUTSIDE RANGE REMARK 500 8 ASN A 3 24.6 L L OUTSIDE RANGE REMARK 500 9 ASP A 71 20.4 L L OUTSIDE RANGE REMARK 500 10 HIS A 50 17.0 L L OUTSIDE RANGE REMARK 500 10 ILE B 4 22.4 L L OUTSIDE RANGE REMARK 500 11 HIS A 52 24.5 L L OUTSIDE RANGE REMARK 500 11 ASP A 71 23.0 L L OUTSIDE RANGE REMARK 500 14 SER A 47 22.8 L L OUTSIDE RANGE REMARK 500 14 GLN A 97 24.1 L L OUTSIDE RANGE REMARK 500 15 GLU A 89 24.2 L L OUTSIDE RANGE REMARK 500 16 ILE B 4 24.6 L L OUTSIDE RANGE REMARK 500 17 HIS B 52 23.8 L L OUTSIDE RANGE REMARK 500 20 HIS A 90 23.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 397 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 NI A 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 334 O REMARK 620 2 HIS A 52 NE2 142.7 REMARK 620 3 HIS A 50 NE2 60.6 88.9 REMARK 620 4 GLU A 56 OE2 125.7 86.0 173.2 REMARK 620 5 HIS A 90 NE2 66.5 130.6 76.7 103.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 NI B 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 52 NE2 REMARK 620 2 HIS B 90 NE2 80.8 REMARK 620 3 GLU B 56 OE2 78.6 114.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MV2 RELATED DB: PDB REMARK 900 REGULAR CRYSTAL STRUCTURE OF PLU4264 PROTEIN FROM REMARK 900 PHOTORHABDUS LUMINESCENS REMARK 900 RELATED ID: NATPRO-GO.119869 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: MCSG-APC109028 RELATED DB: TARGETTRACK DBREF 4Q29 A 1 122 UNP Q7MZL9 Q7MZL9_PHOLL 1 122 DBREF 4Q29 B 1 122 UNP Q7MZL9 Q7MZL9_PHOLL 1 122 SEQADV 4Q29 HIS A 123 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS A 124 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS A 125 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS A 126 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS A 127 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS A 128 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS B 123 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS B 124 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS B 125 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS B 126 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS B 127 UNP Q7MZL9 EXPRESSION TAG SEQADV 4Q29 HIS B 128 UNP Q7MZL9 EXPRESSION TAG SEQRES 1 A 128 MSE MSE ASN ILE ILE ARG LYS MSE ASP TRP ASP SER MSE SEQRES 2 A 128 VAL HIS GLU TYR ASP LEU ASP GLY SER ARG LEU LEU PRO SEQRES 3 A 128 TRP GLU GLY LEU ASN THR PRO PHE GLY GLY ALA TRP CYS SEQRES 4 A 128 ILE VAL ARG PRO GLU THR LYS SER PHE ARG HIS SER HIS SEQRES 5 A 128 ASN GLU TYR GLU LEU PHE ILE VAL ILE GLN GLY ASN ALA SEQRES 6 A 128 ILE ILE ARG ILE ASN ASP GLU ASP PHE PRO VAL THR LYS SEQRES 7 A 128 GLY ASP LEU ILE ILE ILE PRO LEU ASP SER GLU HIS HIS SEQRES 8 A 128 VAL ILE ASN ASN ASN GLN GLU ASP PHE HIS PHE TYR THR SEQRES 9 A 128 ILE TRP TRP ASP LYS GLU SER THR LEU ASN PHE LEU THR SEQRES 10 A 128 ARG LEU GLU GLN ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 128 MSE MSE ASN ILE ILE ARG LYS MSE ASP TRP ASP SER MSE SEQRES 2 B 128 VAL HIS GLU TYR ASP LEU ASP GLY SER ARG LEU LEU PRO SEQRES 3 B 128 TRP GLU GLY LEU ASN THR PRO PHE GLY GLY ALA TRP CYS SEQRES 4 B 128 ILE VAL ARG PRO GLU THR LYS SER PHE ARG HIS SER HIS SEQRES 5 B 128 ASN GLU TYR GLU LEU PHE ILE VAL ILE GLN GLY ASN ALA SEQRES 6 B 128 ILE ILE ARG ILE ASN ASP GLU ASP PHE PRO VAL THR LYS SEQRES 7 B 128 GLY ASP LEU ILE ILE ILE PRO LEU ASP SER GLU HIS HIS SEQRES 8 B 128 VAL ILE ASN ASN ASN GLN GLU ASP PHE HIS PHE TYR THR SEQRES 9 B 128 ILE TRP TRP ASP LYS GLU SER THR LEU ASN PHE LEU THR SEQRES 10 B 128 ARG LEU GLU GLN ASP HIS HIS HIS HIS HIS HIS MODRES 4Q29 MSE A 2 MET SELENOMETHIONINE MODRES 4Q29 MSE A 8 MET SELENOMETHIONINE MODRES 4Q29 MSE A 13 MET SELENOMETHIONINE MODRES 4Q29 MSE B 2 MET SELENOMETHIONINE MODRES 4Q29 MSE B 8 MET SELENOMETHIONINE MODRES 4Q29 MSE B 13 MET SELENOMETHIONINE HET MSE A 2 16 HET MSE A 8 16 HET MSE A 13 17 HET MSE B 2 16 HET MSE B 8 17 HET MSE B 13 17 HET NI A 201 1 HET NA A 202 1 HET NI B 201 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM NA SODIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 NI 2(NI 2+) FORMUL 4 NA NA 1+ FORMUL 6 HOH *198(H2 O) HELIX 1 1 ASP A 9 MSE A 13 5 5 HELIX 2 2 ASP A 108 ASP A 122 1 15 HELIX 3 3 ASP B 108 GLN B 121 1 14 SHEET 1 A 7 ILE A 5 ARG A 6 0 SHEET 2 A 7 LEU B 81 ILE B 84 -1 O LEU B 81 N ARG A 6 SHEET 3 A 7 TYR B 55 GLN B 62 -1 N PHE B 58 O ILE B 82 SHEET 4 A 7 PHE B 100 TRP B 107 -1 O TYR B 103 N ILE B 59 SHEET 5 A 7 GLY B 35 VAL B 41 -1 N CYS B 39 O PHE B 102 SHEET 6 A 7 LEU B 19 ARG B 23 -1 N ASP B 20 O ILE B 40 SHEET 7 A 7 VAL B 14 GLU B 16 -1 N VAL B 14 O GLY B 21 SHEET 1 B 7 VAL A 14 GLU A 16 0 SHEET 2 B 7 LEU A 19 ARG A 23 -1 O GLY A 21 N VAL A 14 SHEET 3 B 7 GLY A 35 VAL A 41 -1 O ILE A 40 N ASP A 20 SHEET 4 B 7 PHE A 100 TRP A 107 -1 O PHE A 102 N CYS A 39 SHEET 5 B 7 TYR A 55 GLN A 62 -1 N ILE A 59 O TYR A 103 SHEET 6 B 7 LEU A 81 ILE A 84 -1 O ILE A 82 N PHE A 58 SHEET 7 B 7 ILE B 5 ARG B 6 -1 O ARG B 6 N LEU A 81 SHEET 1 C 4 THR A 45 LYS A 46 0 SHEET 2 C 4 HIS A 90 ASN A 94 -1 O ASN A 94 N THR A 45 SHEET 3 C 4 ASN A 64 ILE A 69 -1 N ILE A 66 O ILE A 93 SHEET 4 C 4 GLU A 72 THR A 77 -1 O PHE A 74 N ILE A 67 SHEET 1 D 4 THR B 45 LYS B 46 0 SHEET 2 D 4 HIS B 90 ASN B 94 -1 O ASN B 94 N THR B 45 SHEET 3 D 4 ASN B 64 ILE B 69 -1 N ILE B 66 O ILE B 93 SHEET 4 D 4 GLU B 72 THR B 77 -1 O VAL B 76 N ALA B 65 LINK C MSE A 2 N ASN A 3 1555 1555 1.33 LINK C LYS A 7 N MSE A 8 1555 1555 1.32 LINK C MSE A 8 N ASP A 9 1555 1555 1.34 LINK C SER A 12 N MSE A 13 1555 1555 1.31 LINK C MSE A 13 N VAL A 14 1555 1555 1.34 LINK C MSE B 2 N ASN B 3 1555 1555 1.33 LINK C LYS B 7 N MSE B 8 1555 1555 1.33 LINK C MSE B 8 N ASP B 9 1555 1555 1.31 LINK C SER B 12 N MSE B 13 1555 1555 1.30 LINK C MSE B 13 N VAL B 14 1555 1555 1.33 LINK NI NI A 201 O HOH A 334 1555 1555 2.00 LINK NE2AHIS B 52 NI NI B 201 1555 1555 2.16 LINK NE2AHIS B 90 NI NI B 201 1555 1555 2.17 LINK NE2 HIS A 52 NI NI A 201 1555 1555 2.17 LINK NE2 HIS A 50 NI NI A 201 1555 1555 2.19 LINK OE2 GLU A 56 NI NI A 201 1555 1555 2.26 LINK OE2 GLU B 56 NI NI B 201 1555 1555 2.29 LINK NE2 HIS A 90 NI NI A 201 1555 1555 2.46 LINK NA NA A 202 O HOH A 381 1555 1555 2.50 CISPEP 1 LEU A 25 PRO A 26 1 -9.74 CISPEP 2 LEU B 25 PRO B 26 1 3.38 CISPEP 3 LEU A 25 PRO A 26 2 -5.75 CISPEP 4 LEU B 25 PRO B 26 2 23.40 CISPEP 5 LEU A 25 PRO A 26 3 1.51 CISPEP 6 LEU B 25 PRO B 26 3 12.30 CISPEP 7 LEU A 25 PRO A 26 4 0.08 CISPEP 8 LEU B 25 PRO B 26 4 7.81 CISPEP 9 LEU A 25 PRO A 26 5 0.19 CISPEP 10 LEU B 25 PRO B 26 5 17.84 CISPEP 11 LEU A 25 PRO A 26 6 -5.87 CISPEP 12 LEU B 25 PRO B 26 6 -9.82 CISPEP 13 LEU A 25 PRO A 26 7 1.39 CISPEP 14 LEU B 25 PRO B 26 7 0.81 CISPEP 15 LEU A 25 PRO A 26 8 4.20 CISPEP 16 LEU B 25 PRO B 26 8 6.10 CISPEP 17 LEU A 25 PRO A 26 9 -1.44 CISPEP 18 LEU B 25 PRO B 26 9 15.61 CISPEP 19 LEU A 25 PRO A 26 10 1.92 CISPEP 20 LEU B 25 PRO B 26 10 3.06 CISPEP 21 LEU A 25 PRO A 26 11 -5.12 CISPEP 22 LEU B 25 PRO B 26 11 3.07 CISPEP 23 LEU A 25 PRO A 26 12 0.41 CISPEP 24 LEU B 25 PRO B 26 12 2.68 CISPEP 25 LEU A 25 PRO A 26 13 3.50 CISPEP 26 LEU B 25 PRO B 26 13 -7.85 CISPEP 27 LEU A 25 PRO A 26 14 -1.65 CISPEP 28 LEU B 25 PRO B 26 14 4.96 CISPEP 29 LEU A 25 PRO A 26 15 1.40 CISPEP 30 LEU B 25 PRO B 26 15 3.49 CISPEP 31 LEU A 25 PRO A 26 16 -5.98 CISPEP 32 LEU B 25 PRO B 26 16 0.65 CISPEP 33 LEU A 25 PRO A 26 17 -9.46 CISPEP 34 LEU B 25 PRO B 26 17 0.21 CISPEP 35 LEU A 25 PRO A 26 18 -4.76 CISPEP 36 LEU B 25 PRO B 26 18 -3.22 CISPEP 37 LEU A 25 PRO A 26 19 0.84 CISPEP 38 LEU B 25 PRO B 26 19 5.27 CISPEP 39 LEU A 25 PRO A 26 20 0.58 CISPEP 40 LEU B 25 PRO B 26 20 0.30 SITE 1 AC1 5 HIS A 50 HIS A 52 GLU A 56 HIS A 90 SITE 2 AC1 5 HOH A 334 SITE 1 AC2 2 HOH A 381 ASP B 11 SITE 1 AC3 4 HIS B 50 HIS B 52 GLU B 56 HIS B 90 CRYST1 55.738 147.687 83.843 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011927 0.00000