PDB Short entry for 4Q9Z HEADER TRANSFERASE/TRANSFERASE INHIBITOR 02-MAY-14 4Q9Z TITLE HUMAN PROTEIN KINASE C THETA IN COMPLEX WITH COMPOUND35 ((1R)-9- TITLE 2 (AZETIDIN-3-YLAMINO)-1,8-DIMETHYL-3,5-DIHYDRO[1,2,4]TRIAZINO[3,4- TITLE 3 C][1,4]BENZOXAZIN-2(1H)-ONE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN PROTEIN KINASE C THETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: NPKC-THETA; COMPND 6 EC: 2.7.11.13; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKCQ, PRKCT; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PKC THETA KINASE, KINASE CATALYTIC DOMAIN, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ARGIRIADI,D.M.GEORGE REVDAT 4 21-JAN-15 4Q9Z 1 JRNL REVDAT 3 17-SEP-14 4Q9Z 1 SOURCE REVDAT 2 30-JUL-14 4Q9Z 1 JRNL REVDAT 1 02-JUL-14 4Q9Z 0 JRNL AUTH D.M.GEORGE,E.C.BREINLINGER,M.FRIEDMAN,Y.ZHANG,J.WANG, JRNL AUTH 2 M.ARGIRIADI,P.BANSAL-PAKALA,M.BARTH,D.B.DUIGNAN,P.HONORE, JRNL AUTH 3 Q.LANG,S.MITTELSTADT,D.POTIN,L.RUNDELL,J.J.EDMUNDS JRNL TITL DISCOVERY OF SELECTIVE AND ORALLY BIOAVAILABLE PROTEIN JRNL TITL 2 KINASE C THETA (PKC THETA ) INHIBITORS FROM A FRAGMENT HIT. JRNL REF J.MED.CHEM. V. 58 222 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25000588 JRNL DOI 10.1021/JM500669M REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 26124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15000 REMARK 3 B22 (A**2) : 3.71000 REMARK 3 B33 (A**2) : -1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.572 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5272 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3708 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7141 ; 1.077 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8845 ; 0.994 ; 2.982 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 641 ; 5.444 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;34.582 ;23.992 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 855 ;12.773 ;15.053 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.124 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 756 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5901 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1147 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3204 ; 0.820 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1293 ; 0.139 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5121 ; 1.601 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2068 ; 2.459 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2016 ; 3.978 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 375 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): 14.173 -0.895 -10.560 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.1311 REMARK 3 T33: 0.2961 T12: 0.1324 REMARK 3 T13: 0.0295 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 3.8300 L22: 3.2733 REMARK 3 L33: 6.4474 L12: 1.0549 REMARK 3 L13: 1.4014 L23: -1.9060 REMARK 3 S TENSOR REMARK 3 S11: -0.0702 S12: 0.0643 S13: 0.6609 REMARK 3 S21: 0.1574 S22: 0.0213 S23: 0.2733 REMARK 3 S31: -0.8064 S32: -0.2182 S33: 0.0489 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 461 A 707 REMARK 3 ORIGIN FOR THE GROUP (A): 18.590 -20.588 -5.864 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.1257 REMARK 3 T33: 0.0846 T12: 0.0214 REMARK 3 T13: 0.0186 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.3602 L22: 1.8220 REMARK 3 L33: 2.6108 L12: -0.3861 REMARK 3 L13: -0.0476 L23: 0.2368 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.0976 S13: 0.1225 REMARK 3 S21: 0.0264 S22: 0.0800 S23: -0.0375 REMARK 3 S31: -0.1173 S32: 0.0076 S33: -0.0337 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 374 B 460 REMARK 3 ORIGIN FOR THE GROUP (A): 10.495 -11.756 -46.384 REMARK 3 T TENSOR REMARK 3 T11: 0.5450 T22: 0.5370 REMARK 3 T33: 0.4888 T12: -0.1950 REMARK 3 T13: -0.0042 T23: 0.1828 REMARK 3 L TENSOR REMARK 3 L11: 3.1414 L22: 2.9324 REMARK 3 L33: 6.1489 L12: -0.7779 REMARK 3 L13: 1.1706 L23: 3.0916 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: -0.0028 S13: -0.5905 REMARK 3 S21: -0.6519 S22: -0.1229 S23: 0.5605 REMARK 3 S31: -0.2975 S32: -1.0078 S33: 0.1981 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 461 B 704 REMARK 3 ORIGIN FOR THE GROUP (A): 34.407 -10.967 -45.586 REMARK 3 T TENSOR REMARK 3 T11: 0.3332 T22: 0.1788 REMARK 3 T33: 0.2878 T12: -0.0996 REMARK 3 T13: 0.0494 T23: 0.1115 REMARK 3 L TENSOR REMARK 3 L11: 3.9838 L22: 2.0034 REMARK 3 L33: 3.2390 L12: 0.8076 REMARK 3 L13: -1.1756 L23: -0.6090 REMARK 3 S TENSOR REMARK 3 S11: -0.2327 S12: -0.1219 S13: -0.4798 REMARK 3 S21: -0.0069 S22: 0.0963 S23: -0.0194 REMARK 3 S31: 0.3922 S32: -0.1235 S33: 0.1363 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Q9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-14. REMARK 100 THE RCSB ID CODE IS RCSB085790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 73.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.47700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.48300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.28750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.48300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.47700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.28750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 374 REMARK 465 GLU B 667 REMARK 465 PHE B 668 REMARK 465 LEU B 669 REMARK 465 ASN B 670 REMARK 465 GLU B 671 REMARK 465 LYS B 672 REMARK 465 PRO B 673 REMARK 465 ARG B 674 REMARK 465 LEU B 675 REMARK 465 SEP B 676 REMARK 465 PHE B 677 REMARK 465 ALA B 678 REMARK 465 ASP B 679 REMARK 465 ARG B 680 REMARK 465 ALA B 681 REMARK 465 LEU B 682 REMARK 465 ILE B 683 REMARK 465 ASN B 684 REMARK 465 SER B 685 REMARK 465 MET B 686 REMARK 465 ASP B 687 REMARK 465 GLN B 688 REMARK 465 ILE B 705 REMARK 465 SER B 706 REMARK 465 HIS B 707 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 376 CG CD CE NZ REMARK 480 LYS A 384 CE NZ REMARK 480 LYS A 388 NZ REMARK 480 LYS A 393 NZ REMARK 480 LYS A 400 NZ REMARK 480 LYS A 401 CG CD CE NZ REMARK 480 ASN A 403 CG OD1 ND2 REMARK 480 GLU A 437 CG CD OE1 OE2 REMARK 480 LYS A 451 CD CE NZ REMARK 480 LYS A 498 NZ REMARK 480 LYS A 555 CE NZ REMARK 480 GLN A 582 CD OE1 NE2 REMARK 480 GLU A 617 CD OE1 OE2 REMARK 480 GLU A 619 CG CD OE1 OE2 REMARK 480 LYS A 620 NZ REMARK 480 GLU A 636 CD OE1 OE2 REMARK 480 ARG A 652 CD NE CZ NH1 NH2 REMARK 480 LYS A 654 NZ REMARK 480 LYS A 656 CD CE NZ REMARK 480 LYS A 666 CD CE NZ REMARK 480 GLU A 667 CG CD OE1 OE2 REMARK 480 GLU A 671 CD OE1 OE2 REMARK 480 LYS A 672 CG CD CE NZ REMARK 480 ARG A 680 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 688 CD OE1 NE2 REMARK 480 ARG A 703 CG CD NE CZ NH1 NH2 REMARK 480 LEU A 704 CG CD1 CD2 REMARK 480 ILE A 705 CD1 REMARK 480 HIS A 707 CG ND1 CD2 CE1 NE2 REMARK 480 LYS B 374 CG CD CE NZ REMARK 480 LEU B 375 CD1 CD2 REMARK 480 LYS B 376 CG CD CE NZ REMARK 480 ILE B 377 CD1 REMARK 480 GLU B 378 CG CD OE1 OE2 REMARK 480 GLU B 381 CG CD OE1 OE2 REMARK 480 LYS B 384 NZ REMARK 480 LYS B 388 CD CE NZ REMARK 480 SER B 390 OG REMARK 480 PHE B 391 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS B 393 CD CE NZ REMARK 480 LYS B 400 CG CD CE NZ REMARK 480 LYS B 401 CG CD CE NZ REMARK 480 ILE B 408 CD1 REMARK 480 LYS B 409 CE NZ REMARK 480 LYS B 412 CD CE NZ REMARK 480 ASP B 414 CG OD1 OD2 REMARK 480 LEU B 417 CG CD1 CD2 REMARK 480 MET B 418 CE REMARK 480 ASP B 419 CG OD1 OD2 REMARK 480 ASP B 420 CG OD1 OD2 REMARK 480 VAL B 422 CG1 CG2 REMARK 480 LYS B 429 NZ REMARK 480 LEU B 434 CD1 CD2 REMARK 480 TRP B 436 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 480 TRP B 436 CZ3 CH2 REMARK 480 GLU B 437 CG CD OE1 OE2 REMARK 480 LYS B 451 CG CD CE NZ REMARK 480 GLU B 452 CD OE1 OE2 REMARK 480 LYS B 475 CE NZ REMARK 480 LYS B 498 CD CE NZ REMARK 480 LYS B 527 NZ REMARK 480 ASP B 533 CG OD1 OD2 REMARK 480 LYS B 535 NZ REMARK 480 LYS B 555 CG CD CE NZ REMARK 480 ARG B 600 CD NE CZ NH1 NH2 REMARK 480 GLU B 603 CG CD OE1 OE2 REMARK 480 LYS B 604 CD CE NZ REMARK 480 GLU B 605 CD OE1 OE2 REMARK 480 GLU B 617 CD OE1 OE2 REMARK 480 GLU B 619 CG CD OE1 OE2 REMARK 480 LYS B 620 CG CD CE NZ REMARK 480 ARG B 625 CD NE CZ NH1 NH2 REMARK 480 GLU B 640 CD OE1 OE2 REMARK 480 LYS B 645 CG CD CE NZ REMARK 480 GLU B 646 CG CD OE1 OE2 REMARK 480 ILE B 647 CD1 REMARK 480 LYS B 654 CE NZ REMARK 480 SER B 662 OG REMARK 480 ASN B 663 CG OD1 ND2 REMARK 480 PHE B 664 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS B 666 CG CD CE NZ REMARK 480 ASN B 689 CG OD1 ND2 REMARK 480 ARG B 692 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 702 CG CD OE1 OE2 REMARK 480 ARG B 703 CG CD NE CZ NH1 NH2 REMARK 480 LEU B 704 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 652 CG ARG A 652 CD -0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 400 -121.27 57.19 REMARK 500 HIS A 474 -55.57 67.62 REMARK 500 ARG A 503 -13.44 72.84 REMARK 500 ASP A 522 78.05 59.89 REMARK 500 ASN A 557 -152.70 -125.59 REMARK 500 PHE A 614 45.99 -91.86 REMARK 500 PHE A 634 32.46 -99.18 REMARK 500 ASN A 663 49.43 -91.26 REMARK 500 PHE A 691 42.04 -102.94 REMARK 500 LEU A 704 44.92 -102.09 REMARK 500 ILE A 705 -56.10 -138.81 REMARK 500 PHE B 391 31.44 -99.66 REMARK 500 THR B 450 -169.01 -102.89 REMARK 500 HIS B 474 -59.68 68.89 REMARK 500 ARG B 503 -5.88 71.67 REMARK 500 ASP B 522 80.12 60.71 REMARK 500 MET B 530 60.53 -112.74 REMARK 500 ASN B 557 -150.84 -137.94 REMARK 500 PHE B 614 30.57 -88.47 REMARK 500 PHE B 634 44.81 -98.72 REMARK 500 SER B 657 71.23 54.35 REMARK 500 ASN B 663 -97.51 -70.38 REMARK 500 PHE B 664 -58.96 -162.67 REMARK 500 ASP B 665 -135.80 39.63 REMARK 500 PHE B 691 47.00 -105.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 802 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 948 O REMARK 620 2 HOH A 947 O 108.2 REMARK 620 3 HOH A 946 O 89.2 66.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PZW A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PZW B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q9S RELATED DB: PDB DBREF 4Q9Z A 374 706 UNP Q04759 KPCT_HUMAN 374 706 DBREF 4Q9Z B 374 706 UNP Q04759 KPCT_HUMAN 374 706 SEQADV 4Q9Z GLU A 381 UNP Q04759 ILE 381 ENGINEERED MUTATION SEQADV 4Q9Z GLU A 538 UNP Q04759 THR 538 ENGINEERED MUTATION SEQADV 4Q9Z HIS A 707 UNP Q04759 EXPRESSION TAG SEQADV 4Q9Z GLU B 381 UNP Q04759 ILE 381 ENGINEERED MUTATION SEQADV 4Q9Z GLU B 538 UNP Q04759 THR 538 ENGINEERED MUTATION SEQADV 4Q9Z HIS B 707 UNP Q04759 EXPRESSION TAG SEQRES 1 A 334 LYS LEU LYS ILE GLU ASP PHE GLU LEU HIS LYS MET LEU SEQRES 2 A 334 GLY LYS GLY SER PHE GLY LYS VAL PHE LEU ALA GLU PHE SEQRES 3 A 334 LYS LYS THR ASN GLN PHE PHE ALA ILE LYS ALA LEU LYS SEQRES 4 A 334 LYS ASP VAL VAL LEU MET ASP ASP ASP VAL GLU CYS THR SEQRES 5 A 334 MET VAL GLU LYS ARG VAL LEU SER LEU ALA TRP GLU HIS SEQRES 6 A 334 PRO PHE LEU THR HIS MET PHE CYS THR PHE GLN THR LYS SEQRES 7 A 334 GLU ASN LEU PHE PHE VAL MET GLU TYR LEU ASN GLY GLY SEQRES 8 A 334 ASP LEU MET TYR HIS ILE GLN SER CYS HIS LYS PHE ASP SEQRES 9 A 334 LEU SER ARG ALA THR PHE TYR ALA ALA GLU ILE ILE LEU SEQRES 10 A 334 GLY LEU GLN PHE LEU HIS SER LYS GLY ILE VAL TYR ARG SEQRES 11 A 334 ASP LEU LYS LEU ASP ASN ILE LEU LEU ASP LYS ASP GLY SEQRES 12 A 334 HIS ILE LYS ILE ALA ASP PHE GLY MET CYS LYS GLU ASN SEQRES 13 A 334 MET LEU GLY ASP ALA LYS THR ASN GLU PHE CYS GLY THR SEQRES 14 A 334 PRO ASP TYR ILE ALA PRO GLU ILE LEU LEU GLY GLN LYS SEQRES 15 A 334 TYR ASN HIS SER VAL ASP TRP TRP SER PHE GLY VAL LEU SEQRES 16 A 334 LEU TYR GLU MET LEU ILE GLY GLN SER PRO PHE HIS GLY SEQRES 17 A 334 GLN ASP GLU GLU GLU LEU PHE HIS SER ILE ARG MET ASP SEQRES 18 A 334 ASN PRO PHE TYR PRO ARG TRP LEU GLU LYS GLU ALA LYS SEQRES 19 A 334 ASP LEU LEU VAL LYS LEU PHE VAL ARG GLU PRO GLU LYS SEQRES 20 A 334 ARG LEU GLY VAL ARG GLY ASP ILE ARG GLN HIS PRO LEU SEQRES 21 A 334 PHE ARG GLU ILE ASN TRP GLU GLU LEU GLU ARG LYS GLU SEQRES 22 A 334 ILE ASP PRO PRO PHE ARG PRO LYS VAL LYS SER PRO PHE SEQRES 23 A 334 ASP CYS SER ASN PHE ASP LYS GLU PHE LEU ASN GLU LYS SEQRES 24 A 334 PRO ARG LEU SEP PHE ALA ASP ARG ALA LEU ILE ASN SER SEQRES 25 A 334 MET ASP GLN ASN MET PHE ARG ASN PHE SEP PHE MET ASN SEQRES 26 A 334 PRO GLY MET GLU ARG LEU ILE SER HIS SEQRES 1 B 334 LYS LEU LYS ILE GLU ASP PHE GLU LEU HIS LYS MET LEU SEQRES 2 B 334 GLY LYS GLY SER PHE GLY LYS VAL PHE LEU ALA GLU PHE SEQRES 3 B 334 LYS LYS THR ASN GLN PHE PHE ALA ILE LYS ALA LEU LYS SEQRES 4 B 334 LYS ASP VAL VAL LEU MET ASP ASP ASP VAL GLU CYS THR SEQRES 5 B 334 MET VAL GLU LYS ARG VAL LEU SER LEU ALA TRP GLU HIS SEQRES 6 B 334 PRO PHE LEU THR HIS MET PHE CYS THR PHE GLN THR LYS SEQRES 7 B 334 GLU ASN LEU PHE PHE VAL MET GLU TYR LEU ASN GLY GLY SEQRES 8 B 334 ASP LEU MET TYR HIS ILE GLN SER CYS HIS LYS PHE ASP SEQRES 9 B 334 LEU SER ARG ALA THR PHE TYR ALA ALA GLU ILE ILE LEU SEQRES 10 B 334 GLY LEU GLN PHE LEU HIS SER LYS GLY ILE VAL TYR ARG SEQRES 11 B 334 ASP LEU LYS LEU ASP ASN ILE LEU LEU ASP LYS ASP GLY SEQRES 12 B 334 HIS ILE LYS ILE ALA ASP PHE GLY MET CYS LYS GLU ASN SEQRES 13 B 334 MET LEU GLY ASP ALA LYS THR ASN GLU PHE CYS GLY THR SEQRES 14 B 334 PRO ASP TYR ILE ALA PRO GLU ILE LEU LEU GLY GLN LYS SEQRES 15 B 334 TYR ASN HIS SER VAL ASP TRP TRP SER PHE GLY VAL LEU SEQRES 16 B 334 LEU TYR GLU MET LEU ILE GLY GLN SER PRO PHE HIS GLY SEQRES 17 B 334 GLN ASP GLU GLU GLU LEU PHE HIS SER ILE ARG MET ASP SEQRES 18 B 334 ASN PRO PHE TYR PRO ARG TRP LEU GLU LYS GLU ALA LYS SEQRES 19 B 334 ASP LEU LEU VAL LYS LEU PHE VAL ARG GLU PRO GLU LYS SEQRES 20 B 334 ARG LEU GLY VAL ARG GLY ASP ILE ARG GLN HIS PRO LEU SEQRES 21 B 334 PHE ARG GLU ILE ASN TRP GLU GLU LEU GLU ARG LYS GLU SEQRES 22 B 334 ILE ASP PRO PRO PHE ARG PRO LYS VAL LYS SER PRO PHE SEQRES 23 B 334 ASP CYS SER ASN PHE ASP LYS GLU PHE LEU ASN GLU LYS SEQRES 24 B 334 PRO ARG LEU SEP PHE ALA ASP ARG ALA LEU ILE ASN SER SEQRES 25 B 334 MET ASP GLN ASN MET PHE ARG ASN PHE SEP PHE MET ASN SEQRES 26 B 334 PRO GLY MET GLU ARG LEU ILE SER HIS MODRES 4Q9Z SEP A 676 SER PHOSPHOSERINE MODRES 4Q9Z SEP A 695 SER PHOSPHOSERINE MODRES 4Q9Z SEP B 695 SER PHOSPHOSERINE HET SEP A 676 10 HET SEP A 695 10 HET SEP B 695 10 HET PZW A 801 22 HET NA A 802 1 HET PZW B 801 22 HETNAM SEP PHOSPHOSERINE HETNAM PZW (1R)-9-(AZETIDIN-3-YLAMINO)-1,8-DIMETHYL-3,5-DIHYDRO[1, HETNAM 2 PZW 2,4]TRIAZINO[3,4-C][1,4]BENZOXAZIN-2(1H)-ONE HETNAM NA SODIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 3 PZW 2(C15 H19 N5 O2) FORMUL 4 NA NA 1+ FORMUL 6 HOH *56(H2 O) HELIX 1 1 LYS A 376 GLU A 378 5 3 HELIX 2 2 LYS A 413 ASP A 419 1 7 HELIX 3 3 ASP A 421 ALA A 435 1 15 HELIX 4 4 LEU A 466 HIS A 474 1 9 HELIX 5 5 ASP A 477 LYS A 498 1 22 HELIX 6 6 LYS A 506 ASP A 508 5 3 HELIX 7 7 THR A 542 ILE A 546 5 5 HELIX 8 8 ALA A 547 LEU A 552 1 6 HELIX 9 9 HIS A 558 GLY A 575 1 18 HELIX 10 10 ASP A 583 ASP A 594 1 12 HELIX 11 11 GLU A 603 PHE A 614 1 12 HELIX 12 12 GLU A 617 ARG A 621 5 5 HELIX 13 13 ASP A 627 ARG A 635 5 9 HELIX 14 14 ASN A 638 ARG A 644 1 7 HELIX 15 15 ASP A 665 ASN A 670 1 6 HELIX 16 16 ASP A 679 MET A 686 1 8 HELIX 17 17 ASP A 687 ARG A 692 5 6 HELIX 18 18 ASN A 698 HIS A 707 1 10 HELIX 19 19 LYS B 376 GLU B 378 5 3 HELIX 20 20 LYS B 413 ASP B 420 1 8 HELIX 21 21 ASP B 421 ALA B 435 1 15 HELIX 22 22 LEU B 466 HIS B 474 1 9 HELIX 23 23 ASP B 477 LYS B 498 1 22 HELIX 24 24 LYS B 506 ASP B 508 5 3 HELIX 25 25 THR B 542 ILE B 546 5 5 HELIX 26 26 ALA B 547 LEU B 552 1 6 HELIX 27 27 HIS B 558 GLY B 575 1 18 HELIX 28 28 ASP B 583 ASP B 594 1 12 HELIX 29 29 GLU B 603 PHE B 614 1 12 HELIX 30 30 GLU B 617 ARG B 621 5 5 HELIX 31 31 ASP B 627 ARG B 635 5 9 HELIX 32 32 ASN B 638 ARG B 644 1 7 HELIX 33 33 ASN B 698 LEU B 704 1 7 SHEET 1 A 6 PHE A 380 GLY A 389 0 SHEET 2 A 6 GLY A 392 PHE A 399 -1 O VAL A 394 N GLY A 387 SHEET 3 A 6 PHE A 405 LYS A 412 -1 O ALA A 410 N LYS A 393 SHEET 4 A 6 ASN A 453 MET A 458 -1 O MET A 458 N ALA A 407 SHEET 5 A 6 MET A 444 GLN A 449 -1 N CYS A 446 O VAL A 457 SHEET 6 A 6 PHE A 696 MET A 697 -1 O PHE A 696 N THR A 447 SHEET 1 B 3 GLY A 464 ASP A 465 0 SHEET 2 B 3 ILE A 510 LEU A 512 -1 O LEU A 512 N GLY A 464 SHEET 3 B 3 ILE A 518 ILE A 520 -1 O LYS A 519 N LEU A 511 SHEET 1 C 6 PHE B 380 GLY B 389 0 SHEET 2 C 6 GLY B 392 PHE B 399 -1 O LEU B 396 N LYS B 384 SHEET 3 C 6 PHE B 405 LYS B 412 -1 O ILE B 408 N PHE B 395 SHEET 4 C 6 ASN B 453 MET B 458 -1 O MET B 458 N ALA B 407 SHEET 5 C 6 MET B 444 GLN B 449 -1 N CYS B 446 O VAL B 457 SHEET 6 C 6 PHE B 696 MET B 697 -1 O PHE B 696 N THR B 447 SHEET 1 D 3 GLY B 464 ASP B 465 0 SHEET 2 D 3 ILE B 510 LEU B 512 -1 O LEU B 512 N GLY B 464 SHEET 3 D 3 ILE B 518 ILE B 520 -1 O LYS B 519 N LEU B 511 LINK C LEU A 675 N SEP A 676 1555 1555 1.33 LINK C SEP A 676 N PHE A 677 1555 1555 1.33 LINK C PHE A 694 N SEP A 695 1555 1555 1.33 LINK C SEP A 695 N PHE A 696 1555 1555 1.33 LINK C PHE B 694 N SEP B 695 1555 1555 1.33 LINK C SEP B 695 N PHE B 696 1555 1555 1.33 LINK NA NA A 802 O HOH A 948 1555 1555 2.34 LINK NA NA A 802 O HOH A 947 1555 1555 2.34 LINK NA NA A 802 O HOH A 946 1555 1555 2.68 SITE 1 AC1 12 LEU A 386 PHE A 391 VAL A 394 ALA A 407 SITE 2 AC1 12 MET A 458 GLU A 459 LEU A 461 ASP A 508 SITE 3 AC1 12 ASN A 509 LEU A 511 ASP A 522 PHE A 664 SITE 1 AC2 5 GLU A 586 ASP A 594 HOH A 946 HOH A 947 SITE 2 AC2 5 HOH A 948 SITE 1 AC3 10 VAL B 394 ALA B 407 MET B 458 GLU B 459 SITE 2 AC3 10 LEU B 461 ASP B 508 ASN B 509 LEU B 511 SITE 3 AC3 10 ASP B 522 PHE B 659 CRYST1 76.954 78.575 146.966 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012995 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006804 0.00000