PDB Short entry for 4QA9 HEADER HYDROLASE 02-MAY-14 4QA9 TITLE ENSEMBLE REFINEMENT OF AN EPOXIDE HYDROLASE FROM STREPTOMYCES TITLE 2 CARZINOSTATICUS SUBSP. NEOCARZINOSTATICUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPOXIDE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CARZINOSTATICUS SUBSP. SOURCE 3 NEOCARZINOSTATICUS; SOURCE 4 ORGANISM_TAXID: 167636; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, MCSG, ENZYME DISCOVERY FOR NATURAL PRODUCT KEYWDS 3 BIOSYNTHESIS, NATPRO, EPOXIDE HYDROLASE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION NUMMDL 20 AUTHOR F.WANG,K.TAN,L.BIGELOW,S.CLANCY,G.BABNIGG,C.A.BINGMAN,R.YENNAMALLI, AUTHOR 2 J.LOHMAN,M.MA,B.SHEN,A.JOACHIMIAK,G.N.PHILLIPS JR.,MIDWEST CENTER AUTHOR 3 FOR STRUCTURAL GENOMICS (MCSG),ENZYME DISCOVERY FOR NATURAL PRODUCT AUTHOR 4 BIOSYNTHESIS (NATPRO) REVDAT 2 20-SEP-23 4QA9 1 REMARK SEQADV REVDAT 1 21-MAY-14 4QA9 0 JRNL AUTH F.WANG,K.TAN,L.BIGELOW,S.CLANCY,G.BABNIGG,C.A.BINGMAN, JRNL AUTH 2 R.YENNAMALLI,J.LOHMAN,M.MA,B.SHEN,A.JOACHIMIAK, JRNL AUTH 3 G.N.PHILLIPS JR. JRNL TITL ENSEMBLE REFINEMENT OF AN EPOXIDE HYDROLASE FROM JRNL TITL 2 STREPTOMYCES CARZINOSTATICUS SUBSP. NEOCARZINOSTATICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1420 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 65942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.123 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8208 - 4.4933 0.99 2943 148 0.1404 0.1322 REMARK 3 2 4.4933 - 3.5689 1.00 2788 152 0.1210 0.1571 REMARK 3 3 3.5689 - 3.1184 0.99 2758 148 0.1378 0.1744 REMARK 3 4 3.1184 - 2.8336 0.99 2736 145 0.1253 0.1520 REMARK 3 5 2.8336 - 2.6307 0.97 2632 160 0.1080 0.1407 REMARK 3 6 2.6307 - 2.4757 0.96 2604 158 0.0977 0.1458 REMARK 3 7 2.4757 - 2.3518 0.97 2620 154 0.0906 0.1059 REMARK 3 8 2.3518 - 2.2494 0.95 2567 148 0.0963 0.1276 REMARK 3 9 2.2494 - 2.1629 0.96 2585 129 0.0950 0.1369 REMARK 3 10 2.1629 - 2.0883 0.96 2568 135 0.0989 0.1316 REMARK 3 11 2.0883 - 2.0230 0.96 2648 131 0.1035 0.1355 REMARK 3 12 2.0230 - 1.9652 0.97 2574 140 0.1030 0.1362 REMARK 3 13 1.9652 - 1.9135 0.96 2591 129 0.1081 0.1564 REMARK 3 14 1.9135 - 1.8668 0.97 2602 139 0.1085 0.1414 REMARK 3 15 1.8668 - 1.8243 0.97 2616 122 0.1115 0.1516 REMARK 3 16 1.8243 - 1.7855 0.97 2590 126 0.1151 0.1579 REMARK 3 17 1.7855 - 1.7498 0.98 2580 158 0.1209 0.1564 REMARK 3 18 1.7498 - 1.7168 0.98 2615 132 0.1326 0.1848 REMARK 3 19 1.7168 - 1.6861 0.98 2648 127 0.1505 0.2017 REMARK 3 20 1.6861 - 1.6576 0.98 2634 139 0.1671 0.1940 REMARK 3 21 1.6576 - 1.6308 0.98 2590 144 0.1739 0.2219 REMARK 3 22 1.6308 - 1.6057 0.96 2533 141 0.1846 0.2285 REMARK 3 23 1.6057 - 1.5821 0.90 2415 118 0.2020 0.2200 REMARK 3 24 1.5821 - 1.5599 0.82 2162 120 0.2160 0.2274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 1.216 NULL REMARK 3 CHIRALITY : 0.069 NULL REMARK 3 PLANARITY : 0.009 NULL REMARK 3 DIHEDRAL : 9.950 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65946 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 27.816 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4I19 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE AND 0.1M REMARK 280 TRIS:HCL, PH 8.5. CYRO WAS ETHYLENE GLYCOL., VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.51300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.66500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.25650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.66500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.76950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.66500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.25650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.66500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.76950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.51300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 512 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 44 CB GLU A 44 CG 0.124 REMARK 500 2 GLU A 44 CB GLU A 44 CG 0.141 REMARK 500 2 VAL A 103 CB VAL A 103 CG2 -0.135 REMARK 500 2 ASP A 174 CB ASP A 174 CG -0.165 REMARK 500 3 SER A 298 CB SER A 298 OG -0.107 REMARK 500 5 MET A 237 CB MET A 237 CG 0.339 REMARK 500 5 ASP A 323 CA ASP A 323 CB 0.147 REMARK 500 7 MET A 237 CB MET A 237 CG -0.197 REMARK 500 8 GLU A 344 CB GLU A 344 CG 0.146 REMARK 500 8 GLU A 367 CB GLU A 367 CG -0.226 REMARK 500 8 GLU A 367 CG GLU A 367 CD -0.098 REMARK 500 9 LYS A 307 CE LYS A 307 NZ 0.196 REMARK 500 14 GLU A 225 CG GLU A 225 CD 0.092 REMARK 500 15 MET A 326 CB MET A 326 CG 0.204 REMARK 500 15 GLU A 344 CB GLU A 344 CG 0.197 REMARK 500 16 MET A 237 CB MET A 237 CG 0.331 REMARK 500 17 SER A 298 CB SER A 298 OG -0.107 REMARK 500 18 GLU A 225 CB GLU A 225 CG 0.118 REMARK 500 20 GLU A 27 CB GLU A 27 CG 0.119 REMARK 500 20 GLU A 344 CB GLU A 344 CG 0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 174 CB - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 2 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 3 ARG A 167 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 3 ARG A 167 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 GLU A 211 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 5 MET A 326 CG - SD - CE ANGL. DEV. = -14.4 DEGREES REMARK 500 6 ASP A 217 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 6 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 6 ASP A 276 CB - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 6 LEU A 356 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 7 MET A 237 CG - SD - CE ANGL. DEV. = 17.2 DEGREES REMARK 500 7 ARG A 358 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ASP A 187 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 9 LYS A 307 CD - CE - NZ ANGL. DEV. = 18.3 DEGREES REMARK 500 9 ARG A 340 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 9 ARG A 340 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 10 ARG A 61 CG - CD - NE ANGL. DEV. = 14.7 DEGREES REMARK 500 10 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 10 ARG A 61 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 10 LEU A 210 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 10 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 11 ARG A 50 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 11 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 11 ASP A 323 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 11 MET A 326 CB - CG - SD ANGL. DEV. = -21.7 DEGREES REMARK 500 13 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 13 ARG A 358 CG - CD - NE ANGL. DEV. = 13.1 DEGREES REMARK 500 13 ARG A 358 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 13 ARG A 358 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 14 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 14 MET A 237 CG - SD - CE ANGL. DEV. = 16.9 DEGREES REMARK 500 15 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 15 MET A 237 CB - CG - SD ANGL. DEV. = -30.4 DEGREES REMARK 500 15 MET A 326 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 16 ASP A 88 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 16 ASP A 88 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 16 ASP A 229 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 16 MET A 237 CB - CG - SD ANGL. DEV. = -22.4 DEGREES REMARK 500 16 MET A 237 CG - SD - CE ANGL. DEV. = -22.8 DEGREES REMARK 500 17 ARG A 220 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 18 ARG A 50 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 18 ARG A 61 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 18 LEU A 210 CB - CG - CD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 18 GLU A 211 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 18 MET A 237 CB - CG - SD ANGL. DEV. = 22.6 DEGREES REMARK 500 18 MET A 237 CG - SD - CE ANGL. DEV. = 11.0 DEGREES REMARK 500 18 ASP A 373 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 19 ASP A 174 CB - CG - OD1 ANGL. DEV. = -8.1 DEGREES REMARK 500 19 ASP A 174 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 59 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 73 28.79 43.89 REMARK 500 1 PRO A 99 76.25 -104.50 REMARK 500 1 ALA A 145 -168.34 -123.15 REMARK 500 1 ASP A 174 -133.22 55.88 REMARK 500 1 GLU A 209 -83.53 -121.42 REMARK 500 1 LEU A 210 61.90 -55.05 REMARK 500 1 GLU A 211 -49.05 -160.28 REMARK 500 1 SER A 214 163.66 -49.52 REMARK 500 1 SER A 224 -25.99 -34.95 REMARK 500 1 GLU A 271 -80.11 -104.78 REMARK 500 1 GLN A 349 54.55 -143.02 REMARK 500 2 PRO A 99 77.63 -100.07 REMARK 500 2 HIS A 118 27.01 -143.96 REMARK 500 2 ASP A 174 -135.00 65.87 REMARK 500 2 GLU A 209 -57.33 -123.25 REMARK 500 2 GLU A 271 -95.17 -98.22 REMARK 500 3 ASN A -1 -119.07 -116.19 REMARK 500 3 ASP A 51 -96.62 -80.68 REMARK 500 3 ASP A 174 -133.82 57.45 REMARK 500 3 PRO A 207 49.70 -65.08 REMARK 500 3 ASN A 272 -46.89 -142.87 REMARK 500 3 PHE A 362 66.35 -106.19 REMARK 500 4 ALA A 0 140.23 -31.01 REMARK 500 4 ASP A 30 52.44 -95.68 REMARK 500 4 ASP A 73 61.27 34.81 REMARK 500 4 ALA A 145 -161.52 -100.40 REMARK 500 4 ASP A 174 -121.50 68.46 REMARK 500 4 SER A 252 112.62 -161.69 REMARK 500 4 ASN A 272 -32.23 -141.76 REMARK 500 4 SER A 314 144.29 -171.78 REMARK 500 4 ASP A 357 -23.72 -171.51 REMARK 500 5 ALA A 145 -166.26 -112.67 REMARK 500 5 ASP A 174 -128.26 59.73 REMARK 500 5 LEU A 210 57.56 -115.86 REMARK 500 5 GLU A 211 46.57 -145.83 REMARK 500 5 THR A 212 4.51 -157.03 REMARK 500 5 ASN A 272 -49.32 -146.64 REMARK 500 5 GLU A 275 2.38 -63.26 REMARK 500 5 GLN A 349 58.00 -141.14 REMARK 500 5 GLU A 355 72.86 -117.90 REMARK 500 5 LEU A 356 150.51 -43.39 REMARK 500 6 ASP A 174 -132.66 61.04 REMARK 500 6 GLU A 271 -69.86 -98.29 REMARK 500 6 SER A 314 140.99 -173.43 REMARK 500 6 GLN A 349 57.25 -143.42 REMARK 500 6 GLU A 367 64.35 -119.62 REMARK 500 6 ASP A 373 -67.43 -26.78 REMARK 500 7 HIS A 118 46.75 -140.35 REMARK 500 7 ALA A 145 -154.13 -114.16 REMARK 500 7 ASP A 174 -122.41 51.06 REMARK 500 REMARK 500 THIS ENTRY HAS 165 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A -1 ALA A 0 2 -146.40 REMARK 500 LEU A 356 ASP A 357 4 -143.55 REMARK 500 ASN A -1 ALA A 0 7 -149.26 REMARK 500 LEU A 356 ASP A 357 12 -133.00 REMARK 500 SER A 232 GLY A 233 16 144.58 REMARK 500 ALA A 0 MET A 1 17 -125.09 REMARK 500 ALA A 222 VAL A 223 18 144.28 REMARK 500 VAL A 223 SER A 224 19 138.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I19 RELATED DB: PDB REMARK 900 RELATED ID: MCSG-APC109144 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: NATPRO-GO.119835 RELATED DB: TARGETTRACK DBREF 4QA9 A 1 385 UNP Q84HB8 Q84HB8_STRCZ 1 385 SEQADV 4QA9 SER A -2 UNP Q84HB8 EXPRESSION TAG SEQADV 4QA9 ASN A -1 UNP Q84HB8 EXPRESSION TAG SEQADV 4QA9 ALA A 0 UNP Q84HB8 EXPRESSION TAG SEQRES 1 A 388 SER ASN ALA MET ARG PRO PHE GLN VAL GLN ILE PRO GLN SEQRES 2 A 388 ALA ASP ILE ASP ASP LEU LYS ARG ARG LEU SER GLU THR SEQRES 3 A 388 ARG TRP PRO GLU LEU VAL ASP VAL GLY TRP SER ARG GLY SEQRES 4 A 388 ALA PRO LEU SER TYR ILE LYS GLU LEU ALA GLU TYR TRP SEQRES 5 A 388 ARG ASP GLY PHE ASP TRP ARG ALA ALA GLU ARG ARG ILE SEQRES 6 A 388 ASN GLN TYR PRO GLN PHE THR THR GLU ILE ASP GLY ALA SEQRES 7 A 388 THR ILE HIS PHE LEU HIS VAL ARG SER PRO GLU PRO ASP SEQRES 8 A 388 ALA THR PRO MET VAL ILE THR HIS GLY TRP PRO GLY THR SEQRES 9 A 388 PRO VAL GLU PHE LEU ASP ILE ILE GLY PRO LEU THR ASP SEQRES 10 A 388 PRO ARG ALA HIS GLY GLY ASP PRO ALA ASP ALA PHE HIS SEQRES 11 A 388 LEU VAL ILE PRO SER LEU PRO GLY PHE GLY LEU SER GLY SEQRES 12 A 388 PRO LEU LYS SER ALA GLY TRP GLU LEU GLY ARG ILE ALA SEQRES 13 A 388 MET ALA TRP SER LYS LEU MET ALA SER LEU GLY TYR GLU SEQRES 14 A 388 ARG TYR ILE ALA GLN GLY GLY ASP ILE GLY ALA PHE THR SEQRES 15 A 388 SER LEU LEU LEU GLY ALA ILE ASP PRO SER HIS LEU ALA SEQRES 16 A 388 GLY ILE HIS VAL ASN LEU LEU GLN THR ASN LEU SER GLY SEQRES 17 A 388 GLU PRO GLY GLU LEU GLU THR LEU SER ASP ALA ASP LYS SEQRES 18 A 388 ALA ARG LEU ALA VAL SER GLU ARG PHE LEU ASP ASP LEU SEQRES 19 A 388 SER GLY PRO MET LYS MET GLN SER THR ARG PRO HIS THR SEQRES 20 A 388 ILE GLY TYR MET LEU ASN ASP SER PRO VAL ALA GLN LEU SEQRES 21 A 388 ALA TYR LEU LEU GLU MET PHE LYS HIS TRP ALA GLN THR SEQRES 22 A 388 GLU ASN VAL PRO GLU ASP ALA VAL ASP ARG ASP LEU MET SEQRES 23 A 388 LEU THR HIS ILE SER LEU PHE TRP PHE THR ALA THR GLY SEQRES 24 A 388 GLY SER ALA ALA GLN ALA HIS TYR GLU LEU LYS PRO PHE SEQRES 25 A 388 LEU PRO ILE THR SER LEU ILE GLY ARG SER PRO THR LEU SEQRES 26 A 388 ASP VAL PRO MET GLY VAL ALA VAL TYR PRO GLY ALA LEU SEQRES 27 A 388 PHE GLN PRO VAL ARG SER LEU ALA GLU ARG ASP PHE LYS SEQRES 28 A 388 GLN ILE VAL HIS TRP ALA GLU LEU ASP ARG GLY GLY HIS SEQRES 29 A 388 PHE SER ALA MET GLU GLU PRO ASP LEU PHE VAL ASP ASP SEQRES 30 A 388 LEU ARG THR PHE ASN ARG THR LEU LYS LYS LEU HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 10 HET EDO A 408 10 HET EDO A 409 10 HET EDO A 410 10 HET EDO A 411 10 HET EDO A 412 10 HET EDO A 413 10 HET EDO A 414 10 HET EDO A 415 10 HET EDO A 416 10 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 EDO 12(C2 H6 O2) FORMUL 18 HOH *271(H2 O) HELIX 1 1 PRO A 9 GLU A 22 1 14 HELIX 2 2 PRO A 38 GLY A 52 1 15 HELIX 3 3 ASP A 54 GLN A 64 1 11 HELIX 4 4 THR A 101 GLU A 104 5 4 HELIX 5 5 PHE A 105 ASP A 114 1 10 HELIX 6 6 ASP A 121 ASP A 124 5 4 HELIX 7 7 PHE A 136 GLY A 140 5 5 HELIX 8 8 GLU A 148 GLY A 164 1 17 HELIX 9 9 ASP A 174 ASP A 187 1 14 HELIX 10 10 SER A 214 SER A 224 1 11 HELIX 11 11 SER A 224 LEU A 231 1 8 HELIX 12 12 SER A 232 ARG A 241 1 10 HELIX 13 13 ARG A 241 ASP A 251 1 11 HELIX 14 14 SER A 252 TRP A 267 1 16 HELIX 15 15 VAL A 273 ALA A 277 5 5 HELIX 16 16 ASP A 279 ALA A 294 1 16 HELIX 17 17 THR A 295 LEU A 306 1 12 HELIX 18 18 LYS A 307 LEU A 310 5 4 HELIX 19 19 VAL A 339 PHE A 347 1 9 HELIX 20 20 PHE A 362 GLU A 367 1 6 HELIX 21 21 GLU A 367 LYS A 384 1 18 SHEET 1 A 9 ARG A 2 PHE A 4 0 SHEET 2 A 9 GLN A 67 ILE A 72 -1 O THR A 69 N ARG A 2 SHEET 3 A 9 ALA A 75 VAL A 82 -1 O PHE A 79 N PHE A 68 SHEET 4 A 9 PHE A 126 PRO A 131 -1 O LEU A 128 N VAL A 82 SHEET 5 A 9 THR A 90 THR A 95 1 N MET A 92 O VAL A 129 SHEET 6 A 9 TYR A 168 GLY A 172 1 O GLN A 171 N VAL A 93 SHEET 7 A 9 LEU A 191 VAL A 196 1 O HIS A 195 N ALA A 170 SHEET 8 A 9 MET A 326 VAL A 330 1 O GLY A 327 N ILE A 194 SHEET 9 A 9 ILE A 350 GLU A 355 1 O ALA A 354 N VAL A 330 CISPEP 1 TRP A 98 PRO A 99 1 6.65 CISPEP 2 TRP A 98 PRO A 99 2 1.76 CISPEP 3 TRP A 98 PRO A 99 3 8.18 CISPEP 4 TRP A 98 PRO A 99 4 -6.01 CISPEP 5 TRP A 98 PRO A 99 5 -2.82 CISPEP 6 TRP A 98 PRO A 99 6 3.05 CISPEP 7 TRP A 98 PRO A 99 7 -10.72 CISPEP 8 TRP A 98 PRO A 99 8 1.59 CISPEP 9 TRP A 98 PRO A 99 9 -5.52 CISPEP 10 TRP A 98 PRO A 99 10 -3.46 CISPEP 11 TRP A 98 PRO A 99 11 -4.24 CISPEP 12 TRP A 98 PRO A 99 12 7.39 CISPEP 13 TRP A 98 PRO A 99 13 -0.92 CISPEP 14 TRP A 98 PRO A 99 14 -4.66 CISPEP 15 TRP A 98 PRO A 99 15 3.62 CISPEP 16 TRP A 98 PRO A 99 16 -1.87 CISPEP 17 TRP A 98 PRO A 99 17 3.69 CISPEP 18 TRP A 98 PRO A 99 18 5.71 CISPEP 19 TRP A 98 PRO A 99 19 0.76 CISPEP 20 TRP A 98 PRO A 99 20 -6.71 SITE 1 AC1 4 LEU A 213 SER A 214 ASP A 215 LYS A 218 SITE 1 AC2 4 SER A -2 ILE A 72 ASP A 73 LYS A 158 SITE 1 AC3 2 PRO A 9 HOH A 682 SITE 1 AC4 4 ARG A 61 GLN A 64 TYR A 65 HOH A 723 SITE 1 AC5 8 GLN A 200 THR A 201 ASN A 202 LEU A 342 SITE 2 AC5 8 ALA A 343 ASP A 346 PHE A 347 EDO A 408 SITE 1 AC6 7 ASP A 174 PHE A 227 MET A 235 TRP A 267 SITE 2 AC6 7 LEU A 335 HOH A 621 HOH A 669 SITE 1 AC7 5 PHE A 178 PHE A 309 SER A 319 EDO A 408 SITE 2 AC7 5 HOH A 574 SITE 1 AC8 7 LEU A 181 LEU A 199 GLN A 200 SER A 319 SITE 2 AC8 7 EDO A 405 EDO A 407 EDO A 410 SITE 1 AC9 6 PRO A 85 ASP A 114 ARG A 116 ALA A 117 SITE 2 AC9 6 ALA A 185 HOH A 720 SITE 1 BC1 6 PHE A 178 LEU A 181 LEU A 199 GLN A 200 SITE 2 BC1 6 EDO A 408 HOH A 632 SITE 1 BC2 6 ASP A 174 ILE A 175 PHE A 178 HOH A 621 SITE 2 BC2 6 HOH A 669 HOH A 698 SITE 1 BC3 5 ILE A 13 LEU A 16 LYS A 17 TRP A 49 SITE 2 BC3 5 PHE A 292 SITE 1 BC4 2 ARG A 61 LEU A 282 SITE 1 BC5 8 PRO A 134 PHE A 136 TRP A 147 ALA A 302 SITE 2 BC5 8 GLU A 305 LEU A 306 HOH A 515 HOH A 715 SITE 1 BC6 3 PRO A 308 THR A 313 HOH A 637 SITE 1 BC7 4 GLY A 164 ILE A 316 HOH A 704 HOH A 712 CRYST1 75.330 75.330 165.026 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006060 0.00000