PDB Short entry for 4QN9 HEADER HYDROLASE 17-JUN-14 4QN9 TITLE STRUCTURE OF HUMAN NAPE-PLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE COMPND 3 D; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: N-ACYL PHOSPHATIDYLETHANOLAMINE PHOSPHOLIPASE D, NAPE-PLD, COMPND 6 NAPE-HYDROLYZING PHOSPHOLIPASE D; COMPND 7 EC: 3.1.4.54; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C7ORF18, NAPEPLD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLD, NAPE, ANANDAMIDE, BILE ACID, PHOSPHOLIPASE, INFLAMMATION, PAIN, KEYWDS 2 COMPLEX, NAE, AEA, OEA, PEA, MBL, PE, CANNABINOID, FAT, ACYL, KEYWDS 3 DEOXYCHOLATE, OBESITY, PHOSPHOLIPID, MEMBRANE, STEROID, DRUG, ALPHA- KEYWDS 4 BETA-BETA-ALPHA FOLD, PHOSPHODIESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GARAU REVDAT 2 22-NOV-17 4QN9 1 REMARK REVDAT 1 17-JUN-15 4QN9 0 JRNL AUTH P.MAGOTTI,I.BAUER,M.IGARASHI,M.BABAGOLI,R.MAROTTA, JRNL AUTH 2 D.PIOMELLI,G.GARAU JRNL TITL STRUCTURE OF HUMAN JRNL TITL 2 N-ACYLPHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D: JRNL TITL 3 REGULATION OF FATTY ACID ETHANOLAMIDE BIOSYNTHESIS BY BILE JRNL TITL 4 ACIDS. JRNL REF STRUCTURE V. 23 598 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25684574 JRNL DOI 10.1016/J.STR.2014.12.018 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1794 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2439 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 415 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -2.49000 REMARK 3 B12 (A**2) : 0.77000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.431 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.284 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.409 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5984 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5612 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8208 ; 2.387 ; 2.024 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13057 ; 1.541 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 655 ;12.225 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 273 ;37.452 ;23.773 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 881 ;20.872 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;21.226 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 887 ; 0.290 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6305 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1331 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 B 900 1 REMARK 3 1 B 1 B 900 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 5559 ; 3.540 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 388 REMARK 3 RESIDUE RANGE : A 501 A 504 REMARK 3 RESIDUE RANGE : B 601 B 603 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4663 32.3273 201.6698 REMARK 3 T TENSOR REMARK 3 T11: 0.4771 T22: 0.3043 REMARK 3 T33: 0.1023 T12: -0.0588 REMARK 3 T13: -0.0733 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.6396 L22: 3.2953 REMARK 3 L33: 4.3922 L12: 0.1043 REMARK 3 L13: 0.9371 L23: 1.3275 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: 0.0963 S13: 0.2459 REMARK 3 S21: 0.1031 S22: 0.0068 S23: -0.2815 REMARK 3 S31: -0.6074 S32: 0.7241 S33: 0.0287 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 389 REMARK 3 RESIDUE RANGE : A 505 A 507 REMARK 3 RESIDUE RANGE : B 604 B 610 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6513 20.2661 175.3768 REMARK 3 T TENSOR REMARK 3 T11: 0.2325 T22: 0.1175 REMARK 3 T33: 0.0773 T12: 0.1279 REMARK 3 T13: -0.0397 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 2.6595 L22: 3.2743 REMARK 3 L33: 2.7165 L12: -1.1628 REMARK 3 L13: 0.6901 L23: -0.2377 REMARK 3 S TENSOR REMARK 3 S11: 0.1541 S12: 0.2991 S13: -0.4007 REMARK 3 S21: -0.1266 S22: -0.0205 S23: 0.2432 REMARK 3 S31: 0.0338 S32: -0.0022 S33: -0.1336 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.652 REMARK 200 RESOLUTION RANGE LOW (A) : 82.358 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M LITHIUM SULFATE, 0.1 M HEPES, PH REMARK 280 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 296.11333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.05667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 222.08500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.02833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 370.14167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 296.11333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 148.05667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.02833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 222.08500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 370.14167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -202.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C12 DXC B 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 712 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 GLN A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 MET A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 GLN A 15 REMARK 465 TYR A 16 REMARK 465 PRO A 17 REMARK 465 LYS A 18 REMARK 465 GLU A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ARG A 22 REMARK 465 LYS A 23 REMARK 465 ARG A 24 REMARK 465 GLN A 25 REMARK 465 ASN A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 ARG A 29 REMARK 465 ASN A 30 REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 ALA A 33 REMARK 465 SER A 34 REMARK 465 ASP A 35 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 ARG A 38 REMARK 465 PHE A 39 REMARK 465 SER A 40 REMARK 465 ARG A 41 REMARK 465 LYS A 42 REMARK 465 SER A 43 REMARK 465 PHE A 44 REMARK 465 LYS A 45 REMARK 465 LEU A 46 REMARK 465 ASP A 47 REMARK 465 TYR A 48 REMARK 465 ARG A 49 REMARK 465 LEU A 50 REMARK 465 GLU A 51 REMARK 465 GLU A 52 REMARK 465 ASP A 53 REMARK 465 VAL A 54 REMARK 465 THR A 55 REMARK 465 LYS A 56 REMARK 465 VAL A 80 REMARK 465 LEU A 81 REMARK 465 ARG A 82 REMARK 465 TRP A 83 REMARK 465 LEU A 84 REMARK 465 ILE A 85 REMARK 465 MET A 86 REMARK 465 GLU A 87 REMARK 465 LYS A 88 REMARK 465 ASP A 89 REMARK 465 HIS A 90 REMARK 465 ASP A 389 REMARK 465 ASP A 390 REMARK 465 GLU A 391 REMARK 465 ASN A 392 REMARK 465 PHE A 393 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 GLU B 5 REMARK 465 SER B 6 REMARK 465 ASN B 7 REMARK 465 GLN B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 MET B 11 REMARK 465 THR B 12 REMARK 465 SER B 13 REMARK 465 SER B 14 REMARK 465 GLN B 15 REMARK 465 TYR B 16 REMARK 465 PRO B 17 REMARK 465 LYS B 18 REMARK 465 GLU B 19 REMARK 465 ALA B 20 REMARK 465 VAL B 21 REMARK 465 ARG B 22 REMARK 465 LYS B 23 REMARK 465 ARG B 24 REMARK 465 GLN B 25 REMARK 465 ASN B 26 REMARK 465 SER B 27 REMARK 465 ALA B 28 REMARK 465 ARG B 29 REMARK 465 ASN B 30 REMARK 465 SER B 31 REMARK 465 GLY B 32 REMARK 465 ALA B 33 REMARK 465 SER B 34 REMARK 465 ASP B 35 REMARK 465 SER B 36 REMARK 465 SER B 37 REMARK 465 ARG B 38 REMARK 465 PHE B 39 REMARK 465 SER B 40 REMARK 465 ARG B 41 REMARK 465 LYS B 42 REMARK 465 SER B 43 REMARK 465 PHE B 44 REMARK 465 LYS B 45 REMARK 465 LEU B 46 REMARK 465 ASP B 47 REMARK 465 TYR B 48 REMARK 465 ARG B 49 REMARK 465 LEU B 50 REMARK 465 GLU B 51 REMARK 465 GLU B 52 REMARK 465 ASP B 53 REMARK 465 VAL B 54 REMARK 465 THR B 55 REMARK 465 LYS B 56 REMARK 465 VAL B 80 REMARK 465 LEU B 81 REMARK 465 ARG B 82 REMARK 465 TRP B 83 REMARK 465 LEU B 84 REMARK 465 ILE B 85 REMARK 465 MET B 86 REMARK 465 GLU B 87 REMARK 465 LYS B 88 REMARK 465 ASP B 89 REMARK 465 HIS B 90 REMARK 465 ASP B 390 REMARK 465 GLU B 391 REMARK 465 ASN B 392 REMARK 465 PHE B 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 200 O PHE B 203 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 72 CB TRP A 72 CG 0.110 REMARK 500 TRP B 72 CB TRP B 72 CG 0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 121 CD - NE - CZ ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -11.3 DEGREES REMARK 500 VAL A 127 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO A 176 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 PRO A 176 C - N - CD ANGL. DEV. = -19.1 DEGREES REMARK 500 PRO A 176 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 LEU A 215 CB - CG - CD2 ANGL. DEV. = 10.5 DEGREES REMARK 500 TRP A 232 CA - CB - CG ANGL. DEV. = 12.9 DEGREES REMARK 500 TYR A 287 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 ARG A 329 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU A 361 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG B 121 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG B 121 NE - CZ - NH1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG B 121 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 LEU B 175 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 PRO B 176 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 PRO B 176 C - N - CD ANGL. DEV. = -21.7 DEGREES REMARK 500 PRO B 176 C - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 LEU B 213 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 LEU B 215 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 TRP B 232 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 VAL B 328 CG1 - CB - CG2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG B 384 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 384 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 66 69.77 111.43 REMARK 500 ASN A 67 -127.34 135.34 REMARK 500 PRO A 68 161.12 -42.28 REMARK 500 TRP A 72 -34.57 73.69 REMARK 500 VAL A 93 77.02 42.84 REMARK 500 SER A 96 120.19 70.58 REMARK 500 GLU A 117 146.12 -29.67 REMARK 500 ALA A 118 -141.60 -142.25 REMARK 500 VAL A 120 -174.04 76.71 REMARK 500 ARG A 121 73.47 110.69 REMARK 500 HIS A 132 -120.21 44.91 REMARK 500 ASP A 147 64.78 21.99 REMARK 500 LEU A 175 158.24 120.33 REMARK 500 PRO A 176 67.53 -153.38 REMARK 500 PRO A 177 107.20 -51.25 REMARK 500 ASP A 179 -38.87 132.58 REMARK 500 ALA A 180 147.95 166.04 REMARK 500 HIS A 187 126.68 113.32 REMARK 500 HIS A 253 -155.46 -159.43 REMARK 500 LYS A 256 126.86 -174.21 REMARK 500 THR A 258 -148.02 -135.77 REMARK 500 PRO A 289 -162.04 -61.68 REMARK 500 ALA A 290 -55.88 91.06 REMARK 500 PHE A 298 -163.06 -101.67 REMARK 500 ALA A 310 46.00 75.31 REMARK 500 HIS A 343 -163.55 54.63 REMARK 500 TRP A 344 144.52 58.40 REMARK 500 THR A 346 -52.77 -133.48 REMARK 500 ALA A 350 -160.67 -161.63 REMARK 500 VAL B 66 64.87 111.12 REMARK 500 ASN B 67 -122.11 138.36 REMARK 500 PRO B 68 160.61 -45.75 REMARK 500 TRP B 72 -33.15 75.32 REMARK 500 VAL B 93 75.11 42.43 REMARK 500 SER B 96 121.90 71.25 REMARK 500 GLU B 117 143.37 -29.56 REMARK 500 ALA B 118 -159.46 -150.82 REMARK 500 VAL B 120 -172.66 78.04 REMARK 500 ARG B 121 72.00 112.56 REMARK 500 HIS B 132 -123.71 47.48 REMARK 500 ASP B 147 62.82 23.67 REMARK 500 LEU B 175 160.87 116.78 REMARK 500 PRO B 176 68.98 -154.59 REMARK 500 PRO B 177 106.23 -53.20 REMARK 500 ASP B 179 -37.43 130.98 REMARK 500 ALA B 180 148.04 164.16 REMARK 500 HIS B 187 123.80 115.27 REMARK 500 HIS B 253 -157.15 -155.46 REMARK 500 LYS B 256 130.09 -173.28 REMARK 500 THR B 258 -145.04 -134.43 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 116 GLU A 117 -130.56 REMARK 500 GLU A 117 ALA A 118 132.36 REMARK 500 ALA A 118 GLY A 119 -109.12 REMARK 500 LEU A 175 PRO A 176 147.20 REMARK 500 THR A 285 GLY A 286 113.09 REMARK 500 GLY A 286 TYR A 287 -100.15 REMARK 500 GLU B 116 GLU B 117 -128.76 REMARK 500 GLU B 117 ALA B 118 135.97 REMARK 500 ALA B 118 GLY B 119 -59.78 REMARK 500 VAL B 120 ARG B 121 149.45 REMARK 500 LEU B 175 PRO B 176 149.18 REMARK 500 THR B 285 GLY B 286 141.59 REMARK 500 GLY B 286 TYR B 287 -113.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 121 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 285 -11.17 REMARK 500 GLY A 286 10.34 REMARK 500 GLY B 286 10.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 3PE A 503 REMARK 610 3PE B 606 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3PE B 606 O14 REMARK 620 2 ASP B 284 OD2 95.3 REMARK 620 3 ASP B 189 OD1 97.4 166.5 REMARK 620 4 HIS B 190 NE2 171.4 76.7 90.3 REMARK 620 5 HIS B 343 NE2 99.0 92.8 89.7 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3PE A 503 O14 REMARK 620 2 ASP A 284 OD2 90.7 REMARK 620 3 ASP A 189 OD1 98.1 170.0 REMARK 620 4 HIS A 190 NE2 172.8 82.2 88.9 REMARK 620 5 HIS A 343 NE2 97.1 95.1 88.5 84.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3PE B 606 O12 REMARK 620 2 HIS B 253 NE2 83.4 REMARK 620 3 HIS B 185 NE2 167.4 84.3 REMARK 620 4 HIS B 187 ND1 103.5 96.8 80.7 REMARK 620 5 ASP B 284 OD2 94.9 93.3 83.0 159.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3PE A 503 O12 REMARK 620 2 ASP A 284 OD2 91.9 REMARK 620 3 HIS A 253 NE2 81.4 90.6 REMARK 620 4 HIS A 185 NE2 164.8 83.2 84.3 REMARK 620 5 HIS A 187 ND1 103.6 164.5 93.4 82.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PE B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC B 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC B 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 611 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M5T RELATED DB: PDB REMARK 900 RELATED ID: 4DO3 RELATED DB: PDB REMARK 900 RELATED ID: 3ZWF RELATED DB: PDB REMARK 900 RELATED ID: 1Y44 RELATED DB: PDB REMARK 900 RELATED ID: 1BMC RELATED DB: PDB REMARK 900 RELATED ID: 1BYR RELATED DB: PDB DBREF 4QN9 A 1 393 UNP Q6IQ20 NAPEP_HUMAN 1 393 DBREF 4QN9 B 1 393 UNP Q6IQ20 NAPEP_HUMAN 1 393 SEQRES 1 A 393 MET ASP GLU ASN GLU SER ASN GLN SER LEU MET THR SER SEQRES 2 A 393 SER GLN TYR PRO LYS GLU ALA VAL ARG LYS ARG GLN ASN SEQRES 3 A 393 SER ALA ARG ASN SER GLY ALA SER ASP SER SER ARG PHE SEQRES 4 A 393 SER ARG LYS SER PHE LYS LEU ASP TYR ARG LEU GLU GLU SEQRES 5 A 393 ASP VAL THR LYS SER LYS LYS GLY LYS ASP GLY ARG PHE SEQRES 6 A 393 VAL ASN PRO TRP PRO THR TRP LYS ASN PRO SER ILE PRO SEQRES 7 A 393 ASN VAL LEU ARG TRP LEU ILE MET GLU LYS ASP HIS SER SEQRES 8 A 393 SER VAL PRO SER SER LYS GLU GLU LEU ASP LYS GLU LEU SEQRES 9 A 393 PRO VAL LEU LYS PRO TYR PHE ILE THR ASN PRO GLU GLU SEQRES 10 A 393 ALA GLY VAL ARG GLU ALA GLY LEU ARG VAL THR TRP LEU SEQRES 11 A 393 GLY HIS ALA THR VAL MET VAL GLU MET ASP GLU LEU ILE SEQRES 12 A 393 PHE LEU THR ASP PRO ILE PHE SER SER ARG ALA SER PRO SEQRES 13 A 393 SER GLN TYR MET GLY PRO LYS ARG PHE ARG ARG SER PRO SEQRES 14 A 393 CYS THR ILE SER GLU LEU PRO PRO ILE ASP ALA VAL LEU SEQRES 15 A 393 ILE SER HIS ASN HIS TYR ASP HIS LEU ASP TYR ASN SER SEQRES 16 A 393 VAL ILE ALA LEU ASN GLU ARG PHE GLY ASN GLU LEU ARG SEQRES 17 A 393 TRP PHE VAL PRO LEU GLY LEU LEU ASP TRP MET GLN LYS SEQRES 18 A 393 CYS GLY CYS GLU ASN VAL ILE GLU LEU ASP TRP TRP GLU SEQRES 19 A 393 GLU ASN CYS VAL PRO GLY HIS ASP LYS VAL THR PHE VAL SEQRES 20 A 393 PHE THR PRO SER GLN HIS TRP CYS LYS ARG THR LEU MET SEQRES 21 A 393 ASP ASP ASN LYS VAL LEU TRP GLY SER TRP SER VAL LEU SEQRES 22 A 393 GLY PRO TRP ASN ARG PHE PHE PHE ALA GLY ASP THR GLY SEQRES 23 A 393 TYR CYS PRO ALA PHE GLU GLU ILE GLY LYS ARG PHE GLY SEQRES 24 A 393 PRO PHE ASP LEU ALA ALA ILE PRO ILE GLY ALA TYR GLU SEQRES 25 A 393 PRO ARG TRP PHE MET LYS TYR GLN HIS VAL ASP PRO GLU SEQRES 26 A 393 GLU ALA VAL ARG ILE HIS THR ASP VAL GLN THR LYS LYS SEQRES 27 A 393 SER MET ALA ILE HIS TRP GLY THR PHE ALA LEU ALA ASN SEQRES 28 A 393 GLU HIS TYR LEU GLU PRO PRO VAL LYS LEU ASN GLU ALA SEQRES 29 A 393 LEU GLU ARG TYR GLY LEU ASN ALA GLU ASP PHE PHE VAL SEQRES 30 A 393 LEU LYS HIS GLY GLU SER ARG TYR LEU ASN ASN ASP ASP SEQRES 31 A 393 GLU ASN PHE SEQRES 1 B 393 MET ASP GLU ASN GLU SER ASN GLN SER LEU MET THR SER SEQRES 2 B 393 SER GLN TYR PRO LYS GLU ALA VAL ARG LYS ARG GLN ASN SEQRES 3 B 393 SER ALA ARG ASN SER GLY ALA SER ASP SER SER ARG PHE SEQRES 4 B 393 SER ARG LYS SER PHE LYS LEU ASP TYR ARG LEU GLU GLU SEQRES 5 B 393 ASP VAL THR LYS SER LYS LYS GLY LYS ASP GLY ARG PHE SEQRES 6 B 393 VAL ASN PRO TRP PRO THR TRP LYS ASN PRO SER ILE PRO SEQRES 7 B 393 ASN VAL LEU ARG TRP LEU ILE MET GLU LYS ASP HIS SER SEQRES 8 B 393 SER VAL PRO SER SER LYS GLU GLU LEU ASP LYS GLU LEU SEQRES 9 B 393 PRO VAL LEU LYS PRO TYR PHE ILE THR ASN PRO GLU GLU SEQRES 10 B 393 ALA GLY VAL ARG GLU ALA GLY LEU ARG VAL THR TRP LEU SEQRES 11 B 393 GLY HIS ALA THR VAL MET VAL GLU MET ASP GLU LEU ILE SEQRES 12 B 393 PHE LEU THR ASP PRO ILE PHE SER SER ARG ALA SER PRO SEQRES 13 B 393 SER GLN TYR MET GLY PRO LYS ARG PHE ARG ARG SER PRO SEQRES 14 B 393 CYS THR ILE SER GLU LEU PRO PRO ILE ASP ALA VAL LEU SEQRES 15 B 393 ILE SER HIS ASN HIS TYR ASP HIS LEU ASP TYR ASN SER SEQRES 16 B 393 VAL ILE ALA LEU ASN GLU ARG PHE GLY ASN GLU LEU ARG SEQRES 17 B 393 TRP PHE VAL PRO LEU GLY LEU LEU ASP TRP MET GLN LYS SEQRES 18 B 393 CYS GLY CYS GLU ASN VAL ILE GLU LEU ASP TRP TRP GLU SEQRES 19 B 393 GLU ASN CYS VAL PRO GLY HIS ASP LYS VAL THR PHE VAL SEQRES 20 B 393 PHE THR PRO SER GLN HIS TRP CYS LYS ARG THR LEU MET SEQRES 21 B 393 ASP ASP ASN LYS VAL LEU TRP GLY SER TRP SER VAL LEU SEQRES 22 B 393 GLY PRO TRP ASN ARG PHE PHE PHE ALA GLY ASP THR GLY SEQRES 23 B 393 TYR CYS PRO ALA PHE GLU GLU ILE GLY LYS ARG PHE GLY SEQRES 24 B 393 PRO PHE ASP LEU ALA ALA ILE PRO ILE GLY ALA TYR GLU SEQRES 25 B 393 PRO ARG TRP PHE MET LYS TYR GLN HIS VAL ASP PRO GLU SEQRES 26 B 393 GLU ALA VAL ARG ILE HIS THR ASP VAL GLN THR LYS LYS SEQRES 27 B 393 SER MET ALA ILE HIS TRP GLY THR PHE ALA LEU ALA ASN SEQRES 28 B 393 GLU HIS TYR LEU GLU PRO PRO VAL LYS LEU ASN GLU ALA SEQRES 29 B 393 LEU GLU ARG TYR GLY LEU ASN ALA GLU ASP PHE PHE VAL SEQRES 30 B 393 LEU LYS HIS GLY GLU SER ARG TYR LEU ASN ASN ASP ASP SEQRES 31 B 393 GLU ASN PHE HET ZN A 501 1 HET ZN A 502 1 HET 3PE A 503 44 HET DXC A 504 28 HET DXC A 505 28 HET DXC A 506 28 HET DXC A 507 28 HET SO4 A 508 5 HET SO4 A 509 5 HET DXC B 601 28 HET DXC B 602 28 HET DXC B 603 28 HET ZN B 604 1 HET ZN B 605 1 HET 3PE B 606 44 HET DXC B 607 28 HET DXC B 608 28 HET DXC B 609 28 HET DXC B 610 28 HET SO4 B 611 5 HETNAM ZN ZINC ION HETNAM 3PE 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE HETNAM DXC (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID HETNAM SO4 SULFATE ION HETSYN 3PE 3-SN-PHOSPHATIDYLETHANOLAMINE HETSYN DXC DEOXYCHOLIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 3PE 2(C41 H82 N O8 P) FORMUL 6 DXC 11(C24 H40 O4) FORMUL 10 SO4 3(O4 S 2-) FORMUL 23 HOH *98(H2 O) HELIX 1 1 SER A 96 LEU A 104 1 9 HELIX 2 2 ASP A 192 PHE A 203 1 12 HELIX 3 3 LEU A 215 CYS A 222 1 8 HELIX 4 4 ALA A 290 PHE A 298 1 9 HELIX 5 5 PRO A 313 LYS A 318 1 6 HELIX 6 6 ASP A 323 VAL A 334 1 12 HELIX 7 7 LEU A 355 GLY A 369 1 15 HELIX 8 8 SER B 96 LEU B 104 1 9 HELIX 9 9 ASP B 192 PHE B 203 1 12 HELIX 10 10 LEU B 215 CYS B 222 1 8 HELIX 11 11 ALA B 290 PHE B 298 1 9 HELIX 12 12 PRO B 313 LYS B 318 1 6 HELIX 13 13 ASP B 323 GLN B 335 1 13 HELIX 14 14 LEU B 355 TYR B 368 1 14 SHEET 1 A 7 VAL A 227 LEU A 230 0 SHEET 2 A 7 ARG A 208 PRO A 212 1 N TRP A 209 O ILE A 228 SHEET 3 A 7 ASP A 179 LEU A 182 1 N ASP A 179 O ARG A 208 SHEET 4 A 7 LEU A 142 THR A 146 1 N LEU A 145 O LEU A 182 SHEET 5 A 7 VAL A 135 MET A 139 -1 N VAL A 137 O PHE A 144 SHEET 6 A 7 ARG A 126 TRP A 129 -1 N ARG A 126 O GLU A 138 SHEET 7 A 7 SER A 383 TYR A 385 -1 O ARG A 384 N VAL A 127 SHEET 1 B 7 GLU A 235 VAL A 238 0 SHEET 2 B 7 HIS A 241 THR A 249 -1 O PHE A 246 N ASN A 236 SHEET 3 B 7 SER A 269 LEU A 273 -1 O SER A 269 N THR A 249 SHEET 4 B 7 ARG A 278 PHE A 281 -1 O PHE A 279 N VAL A 272 SHEET 5 B 7 LEU A 303 PRO A 307 1 O ALA A 305 N PHE A 280 SHEET 6 B 7 SER A 339 ILE A 342 1 O MET A 340 N ALA A 304 SHEET 7 B 7 PHE A 375 PHE A 376 1 O PHE A 376 N SER A 339 SHEET 1 C 7 VAL B 227 LEU B 230 0 SHEET 2 C 7 ARG B 208 PRO B 212 1 N TRP B 209 O ILE B 228 SHEET 3 C 7 ASP B 179 LEU B 182 1 N ASP B 179 O ARG B 208 SHEET 4 C 7 LEU B 142 THR B 146 1 N LEU B 145 O LEU B 182 SHEET 5 C 7 VAL B 135 MET B 139 -1 N VAL B 137 O PHE B 144 SHEET 6 C 7 ARG B 126 TRP B 129 -1 N ARG B 126 O GLU B 138 SHEET 7 C 7 SER B 383 TYR B 385 -1 O ARG B 384 N VAL B 127 SHEET 1 D 7 GLU B 235 VAL B 238 0 SHEET 2 D 7 HIS B 241 THR B 249 -1 O PHE B 246 N ASN B 236 SHEET 3 D 7 SER B 269 LEU B 273 -1 O SER B 269 N THR B 249 SHEET 4 D 7 ARG B 278 PHE B 281 -1 O PHE B 279 N VAL B 272 SHEET 5 D 7 LEU B 303 PRO B 307 1 O ALA B 305 N PHE B 280 SHEET 6 D 7 SER B 339 ILE B 342 1 O MET B 340 N ALA B 304 SHEET 7 D 7 PHE B 375 PHE B 376 1 O PHE B 376 N SER B 339 LINK ZN ZN B 605 O14 3PE B 606 1555 1555 1.97 LINK ZN ZN A 502 O14 3PE A 503 1555 1555 1.98 LINK OD2 ASP B 284 ZN ZN B 605 1555 1555 2.09 LINK OD2 ASP A 284 ZN ZN A 502 1555 1555 2.16 LINK ZN ZN B 604 O12 3PE B 606 1555 1555 2.17 LINK ZN ZN A 501 O12 3PE A 503 1555 1555 2.24 LINK NE2 HIS B 253 ZN ZN B 604 1555 1555 2.29 LINK OD1 ASP B 189 ZN ZN B 605 1555 1555 2.31 LINK OD2 ASP A 284 ZN ZN A 501 1555 1555 2.34 LINK OD1 ASP A 189 ZN ZN A 502 1555 1555 2.35 LINK NE2 HIS A 190 ZN ZN A 502 1555 1555 2.37 LINK NE2 HIS B 185 ZN ZN B 604 1555 1555 2.37 LINK NE2 HIS A 253 ZN ZN A 501 1555 1555 2.38 LINK NE2 HIS A 185 ZN ZN A 501 1555 1555 2.39 LINK ND1 HIS A 187 ZN ZN A 501 1555 1555 2.40 LINK NE2 HIS B 190 ZN ZN B 605 1555 1555 2.40 LINK ND1 HIS B 187 ZN ZN B 604 1555 1555 2.42 LINK NE2 HIS A 343 ZN ZN A 502 1555 1555 2.44 LINK NE2 HIS B 343 ZN ZN B 605 1555 1555 2.46 LINK OD2 ASP B 284 ZN ZN B 604 1555 1555 2.51 CISPEP 1 ASP A 62 GLY A 63 0 14.94 CISPEP 2 ARG A 121 GLU A 122 0 -19.26 CISPEP 3 GLY A 124 LEU A 125 0 -1.07 CISPEP 4 ILE A 178 ASP A 179 0 4.28 CISPEP 5 ILE A 178 ASP A 179 0 -23.58 CISPEP 6 GLY A 299 PRO A 300 0 6.47 CISPEP 7 GLU A 312 PRO A 313 0 6.25 CISPEP 8 ASP B 62 GLY B 63 0 18.68 CISPEP 9 ARG B 121 GLU B 122 0 -18.07 CISPEP 10 GLY B 124 LEU B 125 0 -7.13 CISPEP 11 ILE B 178 ASP B 179 0 2.15 CISPEP 12 ILE B 178 ASP B 179 0 -21.52 CISPEP 13 GLY B 299 PRO B 300 0 5.42 CISPEP 14 GLU B 312 PRO B 313 0 3.95 SITE 1 AC1 6 HIS A 185 HIS A 187 HIS A 253 ASP A 284 SITE 2 AC1 6 ZN A 502 3PE A 503 SITE 1 AC2 6 ASP A 189 HIS A 190 ASP A 284 HIS A 343 SITE 2 AC2 6 ZN A 501 3PE A 503 SITE 1 AC3 18 ALA A 154 PRO A 156 HIS A 187 TYR A 188 SITE 2 AC3 18 ASP A 189 HIS A 253 TRP A 254 LYS A 256 SITE 3 AC3 18 ARG A 257 ASP A 284 MET A 317 GLN A 320 SITE 4 AC3 18 HIS A 321 HIS A 343 ZN A 501 ZN A 502 SITE 5 AC3 18 DXC A 507 3PE B 606 SITE 1 AC4 9 TYR A 193 TRP A 218 LYS A 221 CYS A 222 SITE 2 AC4 9 TYR B 159 MET B 160 DXC B 602 DXC B 607 SITE 3 AC4 9 DXC B 610 SITE 1 AC5 9 TYR A 159 MET A 160 DXC A 506 HOH A 623 SITE 2 AC5 9 TYR B 193 TRP B 218 LYS B 221 CYS B 222 SITE 3 AC5 9 HOH B 701 SITE 1 AC6 3 DXC A 505 MET B 260 DXC B 603 SITE 1 AC7 5 THR A 258 LEU A 259 3PE A 503 DXC B 602 SITE 2 AC7 5 DXC B 607 SITE 1 AC8 4 ARG A 166 ARG A 167 SER B 173 HOH B 736 SITE 1 AC9 4 SER A 152 HOH A 617 SER B 151 SER B 152 SITE 1 BC1 7 TYR A 159 HOH A 614 TYR B 188 TRP B 218 SITE 2 BC1 7 ARG B 257 DXC B 603 HOH B 740 SITE 1 BC2 5 MET A 260 DXC A 504 DXC A 507 HOH B 743 SITE 2 BC2 5 HOH B 748 SITE 1 BC3 5 DXC A 506 THR B 258 LEU B 259 DXC B 601 SITE 2 BC3 5 3PE B 606 SITE 1 BC4 6 HIS B 185 HIS B 187 HIS B 253 ASP B 284 SITE 2 BC4 6 ZN B 605 3PE B 606 SITE 1 BC5 6 ASP B 189 HIS B 190 ASP B 284 HIS B 343 SITE 2 BC5 6 ZN B 604 3PE B 606 SITE 1 BC6 18 3PE A 503 ALA B 154 PRO B 156 HIS B 187 SITE 2 BC6 18 TYR B 188 ASP B 189 HIS B 253 TRP B 254 SITE 3 BC6 18 LYS B 256 ARG B 257 ASP B 284 MET B 317 SITE 4 BC6 18 GLN B 320 HIS B 321 HIS B 343 DXC B 603 SITE 5 BC6 18 ZN B 604 ZN B 605 SITE 1 BC7 8 TYR A 188 TRP A 218 ARG A 257 DXC A 504 SITE 2 BC7 8 DXC A 507 TYR B 159 HOH B 721 HOH B 740 SITE 1 BC8 5 LEU A 259 LYS B 256 LEU B 259 MET B 260 SITE 2 BC8 5 DXC B 609 SITE 1 BC9 6 LYS A 256 LEU A 259 MET A 260 LEU B 259 SITE 2 BC9 6 DXC B 608 DXC B 610 SITE 1 CC1 5 DXC A 504 GLY B 161 PRO B 162 ALA B 348 SITE 2 CC1 5 DXC B 609 SITE 1 CC2 5 THR A 171 SER A 173 HOH A 611 ARG B 166 SITE 2 CC2 5 ARG B 167 CRYST1 95.099 95.099 444.170 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010515 0.006071 0.000000 0.00000 SCALE2 0.000000 0.012142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002251 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.487812 -0.863244 -0.129806 44.03127 1 MTRIX2 2 -0.858757 0.447841 0.248948 -34.25599 1 MTRIX3 2 -0.156771 0.232912 -0.959779 362.82883 1