PDB Short entry for 4QNR HEADER TRANSCRIPTION 18-JUN-14 4QNR TITLE CRYSTAL STRUCTURE OF PSPF(1-265) E108Q MUTANT BOUND TO ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSP OPERON TRANSCRIPTIONAL ACTIVATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHAGE SHOCK PROTEIN F AAA DOMAIN, RESIDUES 1-265; COMPND 5 SYNONYM: PHAGE SHOCK PROTEIN F; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B1303, JW1296, PSPF, YCJB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS AAA DOMAIN, TRANSCRIPTIONAL ACTIVATOR FOR THE PHAGE SHOCK PROTEIN KEYWDS 2 (PSP) OPERON (PSPABCDE) AND PSPG GENE, BACTERIAL SIGMA54 ACTIVATOR, KEYWDS 3 ATP BINDING, DNA BINDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR V.C.DARBARI,E.LAWTON,D.LU,P.C.BURROWS,S.WIESLER,N.JOLY,N.ZHANG, AUTHOR 2 X.ZHANG,M.BUCK REVDAT 3 20-SEP-23 4QNR 1 REMARK SEQADV LINK REVDAT 2 03-SEP-14 4QNR 1 JRNL REVDAT 1 06-AUG-14 4QNR 0 JRNL AUTH V.C.DARBARI,E.LAWTON,D.LU,P.C.BURROWS,S.WIESLER,N.JOLY, JRNL AUTH 2 N.ZHANG,X.ZHANG,M.BUCK JRNL TITL MOLECULAR BASIS OF NUCLEOTIDE-DEPENDENT SUBSTRATE ENGAGEMENT JRNL TITL 2 AND REMODELING BY AN AAA+ ACTIVATOR. JRNL REF NUCLEIC ACIDS RES. V. 42 9249 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 25063294 JRNL DOI 10.1093/NAR/GKU588 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3936 - 3.8743 1.00 2716 122 0.1731 0.2022 REMARK 3 2 3.8743 - 3.0763 1.00 2585 154 0.1470 0.1483 REMARK 3 3 3.0763 - 2.6878 1.00 2594 159 0.1476 0.1809 REMARK 3 4 2.6878 - 2.4422 1.00 2578 144 0.1414 0.1850 REMARK 3 5 2.4422 - 2.2672 1.00 2551 158 0.1366 0.1795 REMARK 3 6 2.2672 - 2.1336 1.00 2598 127 0.1247 0.1501 REMARK 3 7 2.1336 - 2.0268 1.00 2587 137 0.1271 0.1795 REMARK 3 8 2.0268 - 1.9386 1.00 2587 116 0.1272 0.1802 REMARK 3 9 1.9386 - 1.8640 1.00 2572 141 0.1266 0.1697 REMARK 3 10 1.8640 - 1.7997 1.00 2555 124 0.1271 0.1690 REMARK 3 11 1.7997 - 1.7434 1.00 2562 147 0.1228 0.1765 REMARK 3 12 1.7434 - 1.6936 1.00 2568 129 0.1274 0.1507 REMARK 3 13 1.6936 - 1.6490 1.00 2558 126 0.1309 0.2027 REMARK 3 14 1.6490 - 1.6088 1.00 2587 125 0.1418 0.2062 REMARK 3 15 1.6088 - 1.5722 1.00 2539 140 0.1689 0.2547 REMARK 3 16 1.5722 - 1.5387 0.98 2515 133 0.2011 0.2663 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2032 REMARK 3 ANGLE : 1.014 2766 REMARK 3 CHIRALITY : 0.033 306 REMARK 3 PLANARITY : 0.004 356 REMARK 3 DIHEDRAL : 14.208 771 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : KIRKPATRICK BAEZ BIMORPH MIRROR REMARK 200 PAIR FOR HORIZONTAL AND VERTICAL REMARK 200 FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43434 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.539 REMARK 200 RESOLUTION RANGE LOW (A) : 28.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : 0.05184 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 2BJW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PH 8.0, 12-16% MPD, 2M REMARK 280 AMMONIUM FORMATE , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.34000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.17000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.75500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 6.58500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 TYR A 4 REMARK 465 LYS A 5 REMARK 465 ASP A 6 REMARK 465 GLY A 83 REMARK 465 ALA A 84 REMARK 465 PHE A 85 REMARK 465 THR A 86 REMARK 465 GLY A 87 REMARK 465 ALA A 88 REMARK 465 GLN A 89 REMARK 465 LYS A 90 REMARK 465 ARG A 258 REMARK 465 PRO A 259 REMARK 465 PRO A 260 REMARK 465 GLU A 261 REMARK 465 ASP A 262 REMARK 465 ALA A 263 REMARK 465 ILE A 264 REMARK 465 ALA A 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 7 CG OD1 ND2 REMARK 470 LEU A 72 CG CD1 CD2 REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 139 CG CD OE1 NE2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 GLN A 196 CG CD OE1 NE2 REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN A 149 O HOH A 475 1.42 REMARK 500 O HOH A 572 O HOH A 573 2.10 REMARK 500 O2A ATP A 301 O HOH A 546 2.16 REMARK 500 O HOH A 524 O HOH A 601 2.18 REMARK 500 ND2 ASN A 149 O HOH A 475 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 508 O HOH A 509 6554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 81 -101.09 -139.74 REMARK 500 VAL A 132 -160.17 -126.14 REMARK 500 ARG A 182 50.52 -119.64 REMARK 500 ASN A 225 -129.61 46.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD2 REMARK 620 2 ATP A 301 O2G 102.4 REMARK 620 3 ATP A 301 O1B 121.8 71.3 REMARK 620 4 HOH A 546 O 155.3 61.1 72.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BJW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSPF REMARK 900 RELATED ID: 2BJV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSPF(1-275) R168A MUTANT REMARK 900 RELATED ID: 2C98 RELATED DB: PDB REMARK 900 AAA DOMAIN, RESIDUES 1-265 BOUND TO ADP REMARK 900 RELATED ID: 2C96 RELATED DB: PDB REMARK 900 AAA DOMAIN, RESIDUES 1-265 BOUND TO ATP REMARK 900 RELATED ID: 2C99 RELATED DB: PDB REMARK 900 AAA DOMAIN, RESIDUES 1-265 BOUND TO AMPPNP REMARK 900 RELATED ID: 2C9C RELATED DB: PDB REMARK 900 AAA DOMAIN, RESIDUES 1-265 WITH MG-ATP REMARK 900 RELATED ID: 4QNM RELATED DB: PDB REMARK 900 RELATED ID: 4QOS RELATED DB: PDB DBREF 4QNR A 1 265 UNP P37344 PSPF_ECOLI 1 265 SEQADV 4QNR GLN A 108 UNP P37344 GLU 108 ENGINEERED MUTATION SEQRES 1 A 265 MET ALA GLU TYR LYS ASP ASN LEU LEU GLY GLU ALA ASN SEQRES 2 A 265 SER PHE LEU GLU VAL LEU GLU GLN VAL SER HIS LEU ALA SEQRES 3 A 265 PRO LEU ASP LYS PRO VAL LEU ILE ILE GLY GLU ARG GLY SEQRES 4 A 265 THR GLY LYS GLU LEU ILE ALA SER ARG LEU HIS TYR LEU SEQRES 5 A 265 SER SER ARG TRP GLN GLY PRO PHE ILE SER LEU ASN CYS SEQRES 6 A 265 ALA ALA LEU ASN GLU ASN LEU LEU ASP SER GLU LEU PHE SEQRES 7 A 265 GLY HIS GLU ALA GLY ALA PHE THR GLY ALA GLN LYS ARG SEQRES 8 A 265 HIS PRO GLY ARG PHE GLU ARG ALA ASP GLY GLY THR LEU SEQRES 9 A 265 PHE LEU ASP GLN LEU ALA THR ALA PRO MET MET VAL GLN SEQRES 10 A 265 GLU LYS LEU LEU ARG VAL ILE GLU TYR GLY GLU LEU GLU SEQRES 11 A 265 ARG VAL GLY GLY SER GLN PRO LEU GLN VAL ASN VAL ARG SEQRES 12 A 265 LEU VAL CYS ALA THR ASN ALA ASP LEU PRO ALA MET VAL SEQRES 13 A 265 ASN GLU GLY THR PHE ARG ALA ASP LEU LEU ASP ARG LEU SEQRES 14 A 265 ALA PHE ASP VAL VAL GLN LEU PRO PRO LEU ARG GLU ARG SEQRES 15 A 265 GLU SER ASP ILE MET LEU MET ALA GLU TYR PHE ALA ILE SEQRES 16 A 265 GLN MET CYS ARG GLU ILE LYS LEU PRO LEU PHE PRO GLY SEQRES 17 A 265 PHE THR GLU ARG ALA ARG GLU THR LEU LEU ASN TYR ARG SEQRES 18 A 265 TRP PRO GLY ASN ILE ARG GLU LEU LYS ASN VAL VAL GLU SEQRES 19 A 265 ARG SER VAL TYR ARG HIS GLY THR SER ASP TYR PRO LEU SEQRES 20 A 265 ASP ASP ILE ILE ILE ASP PRO PHE LYS ARG ARG PRO PRO SEQRES 21 A 265 GLU ASP ALA ILE ALA HET ATP A 301 43 HET MG A 302 1 HET GOL A 303 14 HET GOL A 304 14 HET EPE A 305 32 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 EPE C8 H18 N2 O4 S FORMUL 7 HOH *213(H2 O) HELIX 1 1 ALA A 12 ALA A 26 1 15 HELIX 2 2 GLY A 41 LEU A 52 1 12 HELIX 3 3 ASN A 69 GLY A 79 1 11 HELIX 4 4 GLY A 94 ALA A 99 1 6 HELIX 5 5 GLN A 108 ALA A 112 5 5 HELIX 6 6 PRO A 113 GLY A 127 1 15 HELIX 7 7 ASP A 151 GLU A 158 1 8 HELIX 8 8 ARG A 162 ALA A 170 1 9 HELIX 9 9 PRO A 178 GLU A 181 5 4 HELIX 10 10 ARG A 182 ILE A 201 1 20 HELIX 11 11 THR A 210 TYR A 220 1 11 HELIX 12 12 GLY A 224 GLY A 241 1 18 SHEET 1 A 5 PHE A 60 ASN A 64 0 SHEET 2 A 5 THR A 103 ASP A 107 1 O PHE A 105 N ILE A 61 SHEET 3 A 5 ARG A 143 THR A 148 1 O VAL A 145 N LEU A 106 SHEET 4 A 5 VAL A 32 ILE A 35 1 N ILE A 34 O CYS A 146 SHEET 5 A 5 ASP A 172 GLN A 175 1 O VAL A 174 N ILE A 35 SHEET 1 B 2 GLU A 128 LEU A 129 0 SHEET 2 B 2 LEU A 138 GLN A 139 -1 O LEU A 138 N LEU A 129 LINK OD2 ASP A 107 MG MG A 302 1555 1555 2.75 LINK O2G ATP A 301 MG MG A 302 1555 1555 2.58 LINK O1B ATP A 301 MG MG A 302 1555 1555 2.67 LINK MG MG A 302 O HOH A 546 1555 1555 2.18 SITE 1 AC1 22 ASN A 7 LEU A 8 LEU A 9 PHE A 15 SITE 2 AC1 22 GLU A 37 ARG A 38 GLY A 39 THR A 40 SITE 3 AC1 22 GLY A 41 LYS A 42 GLU A 43 LEU A 44 SITE 4 AC1 22 ASP A 164 ILE A 226 ARG A 227 MG A 302 SITE 5 AC1 22 HOH A 426 HOH A 470 HOH A 511 HOH A 537 SITE 6 AC1 22 HOH A 546 HOH A 592 SITE 1 AC2 4 GLU A 43 ASP A 107 ATP A 301 HOH A 546 SITE 1 AC3 3 HIS A 24 ARG A 239 HOH A 407 SITE 1 AC4 9 PHE A 78 GLY A 79 HIS A 80 GLU A 81 SITE 2 AC4 9 GLU A 97 GLU A 130 LEU A 138 HOH A 539 SITE 3 AC4 9 HOH A 540 SITE 1 AC5 7 GLU A 81 GLN A 108 ALA A 110 THR A 111 SITE 2 AC5 7 SER A 135 THR A 148 ASN A 149 CRYST1 113.555 113.555 39.510 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008806 0.005084 0.000000 0.00000 SCALE2 0.000000 0.010169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025310 0.00000