PDB Short entry for 4QOZ HEADER RNA/HYDROLASE/RNA BINDING PROTEIN 21-JUN-14 4QOZ TITLE CRYSTAL STRUCTURE OF THE HISTONE MRNA STEM-LOOP, STEM-LOOP BINDING TITLE 2 PROTEIN (PHOSPHORYLATED), AND 3'HEXO TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE MRNA STEM-LOOP; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 3'-5' EXORIBONUCLEASE 1; COMPND 7 CHAIN: B, E; COMPND 8 FRAGMENT: SAP DOMAIN AND NUCLEASE DOMAIN (UNP RESIDUES 55-349); COMPND 9 SYNONYM: 3'-5' EXONUCLEASE ERI1, ERI-1 HOMOLOG, HISTONE MRNA 3'-END- COMPND 10 SPECIFIC EXORIBONUCLEASE, HISTONE MRNA 3'-EXONUCLEASE 1, PROTEIN COMPND 11 3'HEXO, HEXO; COMPND 12 EC: 3.1.-.-; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: HISTONE RNA HAIRPIN-BINDING PROTEIN; COMPND 16 CHAIN: C; COMPND 17 FRAGMENT: RNA-BINDING DOMAIN (UNP RESIDUES 125-223); COMPND 18 SYNONYM: HISTONE STEM-LOOP-BINDING PROTEIN; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 GENE: ERI1, 3'EXO, THEX1; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET24D; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: SLBP, HBP; SOURCE 18 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 19 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS HISTONE MRNA 3'-END PROCESSING, HISTONE MRNA TRANSLATION, MICRORNA KEYWDS 2 HOMEOSTASIS, 5.8S RRNA 3'-END MATURATION, ZFP100, LSM11, KEYWDS 3 PHOSPHORYLATION, NUCLEUS, RNA-HYDROLASE-RNA BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.TAN,L.TONG REVDAT 2 06-AUG-14 4QOZ 1 JRNL REVDAT 1 23-JUL-14 4QOZ 0 JRNL AUTH J.ZHANG,D.TAN,E.F.DEROSE,L.PERERA,Z.DOMINSKI,W.F.MARZLUFF, JRNL AUTH 2 L.TONG,T.M.HALL JRNL TITL MOLECULAR MECHANISMS FOR THE REGULATION OF HISTONE MRNA JRNL TITL 2 STEM-LOOP-BINDING PROTEIN BY PHOSPHORYLATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E2937 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25002523 JRNL DOI 10.1073/PNAS.1406381111 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 40611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1742 - 4.9597 0.90 3909 202 0.1763 0.2025 REMARK 3 2 4.9597 - 3.9380 0.94 3934 204 0.1471 0.2071 REMARK 3 3 3.9380 - 3.4406 0.94 3928 204 0.1691 0.2223 REMARK 3 4 3.4406 - 3.1261 0.95 3926 203 0.1872 0.2463 REMARK 3 5 3.1261 - 2.9022 0.95 3940 204 0.2162 0.2839 REMARK 3 6 2.9022 - 2.7311 0.96 3927 202 0.2219 0.2724 REMARK 3 7 2.7311 - 2.5944 0.96 3943 204 0.2529 0.3059 REMARK 3 8 2.5944 - 2.4815 0.96 3909 201 0.2480 0.3118 REMARK 3 9 2.4815 - 2.3859 0.92 3766 195 0.2582 0.3150 REMARK 3 10 2.3859 - 2.3040 0.84 3432 178 0.2705 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6337 REMARK 3 ANGLE : 1.120 8742 REMARK 3 CHIRALITY : 0.044 989 REMARK 3 PLANARITY : 0.006 950 REMARK 3 DIHEDRAL : 14.322 2588 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-14. REMARK 100 THE RCSB ID CODE IS RCSB086330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.304 REMARK 200 RESOLUTION RANGE LOW (A) : 38.169 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% W/V TACSIMATE, PH 6.0, 18% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.05350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.36100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.75250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.36100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.05350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.75250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 55 REMARK 465 SER B 56 REMARK 465 SER B 57 REMARK 465 ALA B 58 REMARK 465 SER B 59 REMARK 465 ASP B 60 REMARK 465 LEU B 117 REMARK 465 LYS B 118 REMARK 465 GLU B 119 REMARK 465 SER B 120 REMARK 465 ASN B 121 REMARK 465 PHE B 122 REMARK 465 ALA B 123 REMARK 465 ASP B 124 REMARK 465 PRO B 271 REMARK 465 ARG B 272 REMARK 465 SER B 273 REMARK 465 LYS B 349 REMARK 465 LEU B 350 REMARK 465 GLU B 351 REMARK 465 HIS B 352 REMARK 465 HIS B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 MET C 104 REMARK 465 GLY C 105 REMARK 465 SER C 106 REMARK 465 SER C 107 REMARK 465 HIS C 108 REMARK 465 HIS C 109 REMARK 465 HIS C 110 REMARK 465 HIS C 111 REMARK 465 HIS C 112 REMARK 465 HIS C 113 REMARK 465 SER C 114 REMARK 465 SER C 115 REMARK 465 GLY C 116 REMARK 465 LEU C 117 REMARK 465 VAL C 118 REMARK 465 PRO C 119 REMARK 465 ARG C 120 REMARK 465 GLY C 121 REMARK 465 SER C 122 REMARK 465 HIS C 123 REMARK 465 MET C 124 REMARK 465 PRO C 125 REMARK 465 ALA C 126 REMARK 465 PRO C 200 REMARK 465 ALA C 201 REMARK 465 GLU C 202 REMARK 465 GLU C 203 REMARK 465 GLY C 204 REMARK 465 CYS C 205 REMARK 465 ASP C 206 REMARK 465 LEU C 207 REMARK 465 GLN C 208 REMARK 465 GLU C 209 REMARK 465 ILE C 210 REMARK 465 HIS C 211 REMARK 465 PRO C 212 REMARK 465 VAL C 213 REMARK 465 ASP C 214 REMARK 465 LEU C 215 REMARK 465 GLU C 216 REMARK 465 SER C 217 REMARK 465 ALA C 218 REMARK 465 GLU C 219 REMARK 465 SER C 220 REMARK 465 SER C 221 REMARK 465 SER C 222 REMARK 465 GLU C 223 REMARK 465 C D 1 REMARK 465 C D 2 REMARK 465 A D 3 REMARK 465 A D 4 REMARK 465 A D 5 REMARK 465 G D 6 REMARK 465 G D 7 REMARK 465 C D 8 REMARK 465 THR E 55 REMARK 465 SER E 56 REMARK 465 SER E 57 REMARK 465 ALA E 58 REMARK 465 SER E 59 REMARK 465 ASP E 60 REMARK 465 LEU E 117 REMARK 465 LYS E 118 REMARK 465 GLU E 119 REMARK 465 SER E 120 REMARK 465 ASN E 121 REMARK 465 PHE E 122 REMARK 465 ALA E 123 REMARK 465 ASP E 124 REMARK 465 ARG E 272 REMARK 465 SER E 273 REMARK 465 GLU E 351 REMARK 465 HIS E 352 REMARK 465 HIS E 353 REMARK 465 HIS E 354 REMARK 465 HIS E 355 REMARK 465 HIS E 356 REMARK 465 HIS E 357 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PHE B 61 O HOH B 493 2.11 REMARK 500 NH2 ARG E 317 O LEU E 334 2.15 REMARK 500 O HOH B 436 O HOH B 460 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' U D 9 OD2 ASP E 184 4456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C A 1 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 62 25.32 -78.95 REMARK 500 ILE B 178 -73.24 -84.81 REMARK 500 THR B 221 -74.45 -107.74 REMARK 500 ILE E 178 -70.75 -85.64 REMARK 500 THR E 221 -73.78 -110.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 115 DISTANCE = 9.29 ANGSTROMS REMARK 525 HOH D 116 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH D 117 DISTANCE = 9.38 ANGSTROMS REMARK 525 HOH D 118 DISTANCE = 6.85 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L8R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HISTONE MRNA STEM-LOOP, STEM-LOOP REMARK 900 BINDING PROTEIN (UNPHOSPHORYLATED), AND 3'HEXO TERNARY REMARK 900 COMPLEX DBREF 4QOZ B 55 349 UNP Q8IV48 ERI1_HUMAN 55 349 DBREF 4QOZ C 125 223 UNP Q14493 SLBP_HUMAN 125 223 DBREF 4QOZ E 55 349 UNP Q8IV48 ERI1_HUMAN 55 349 DBREF 4QOZ A 1 26 PDB 4QOZ 4QOZ 1 26 DBREF 4QOZ D 1 26 PDB 4QOZ 4QOZ 1 26 SEQADV 4QOZ LEU B 350 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ GLU B 351 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS B 352 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS B 353 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS B 354 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS B 355 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS B 356 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS B 357 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ MET C 104 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ GLY C 105 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ SER C 106 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ SER C 107 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ HIS C 108 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ HIS C 109 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ HIS C 110 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ HIS C 111 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ HIS C 112 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ HIS C 113 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ SER C 114 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ SER C 115 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ GLY C 116 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ LEU C 117 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ VAL C 118 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ PRO C 119 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ ARG C 120 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ GLY C 121 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ SER C 122 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ HIS C 123 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ MET C 124 UNP Q14493 EXPRESSION TAG SEQADV 4QOZ LEU E 350 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ GLU E 351 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS E 352 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS E 353 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS E 354 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS E 355 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS E 356 UNP Q8IV48 EXPRESSION TAG SEQADV 4QOZ HIS E 357 UNP Q8IV48 EXPRESSION TAG SEQRES 1 A 26 C C A A A G G C U C U U U SEQRES 2 A 26 U C A G A G C C A C C C A SEQRES 1 B 303 THR SER SER ALA SER ASP PHE SER ASP PRO VAL TYR LYS SEQRES 2 B 303 GLU ILE ALA ILE THR ASN GLY CYS ILE ASN ARG MET SER SEQRES 3 B 303 LYS GLU GLU LEU ARG ALA LYS LEU SER GLU PHE LYS LEU SEQRES 4 B 303 GLU THR ARG GLY VAL LYS ASP VAL LEU LYS LYS ARG LEU SEQRES 5 B 303 LYS ASN TYR TYR LYS LYS GLN LYS LEU MET LEU LYS GLU SEQRES 6 B 303 SER ASN PHE ALA ASP SER TYR TYR ASP TYR ILE CYS ILE SEQRES 7 B 303 ILE ASP PHE GLU ALA THR CYS GLU GLU GLY ASN PRO PRO SEQRES 8 B 303 GLU PHE VAL HIS GLU ILE ILE GLU PHE PRO VAL VAL LEU SEQRES 9 B 303 LEU ASN THR HIS THR LEU GLU ILE GLU ASP THR PHE GLN SEQRES 10 B 303 GLN TYR VAL ARG PRO GLU ILE ASN THR GLN LEU SER ASP SEQRES 11 B 303 PHE CYS ILE SER LEU THR GLY ILE THR GLN ASP GLN VAL SEQRES 12 B 303 ASP ARG ALA ASP THR PHE PRO GLN VAL LEU LYS LYS VAL SEQRES 13 B 303 ILE ASP TRP MET LYS LEU LYS GLU LEU GLY THR LYS TYR SEQRES 14 B 303 LYS TYR SER LEU LEU THR ASP GLY SER TRP ASP MET SER SEQRES 15 B 303 LYS PHE LEU ASN ILE GLN CYS GLN LEU SER ARG LEU LYS SEQRES 16 B 303 TYR PRO PRO PHE ALA LYS LYS TRP ILE ASN ILE ARG LYS SEQRES 17 B 303 SER TYR GLY ASN PHE TYR LYS VAL PRO ARG SER GLN THR SEQRES 18 B 303 LYS LEU THR ILE MET LEU GLU LYS LEU GLY MET ASP TYR SEQRES 19 B 303 ASP GLY ARG PRO HIS CYS GLY LEU ASP ASP SER LYS ASN SEQRES 20 B 303 ILE ALA ARG ILE ALA VAL ARG MET LEU GLN ASP GLY CYS SEQRES 21 B 303 GLU LEU ARG ILE ASN GLU LYS MET HIS ALA GLY GLN LEU SEQRES 22 B 303 MET SER VAL SER SER SER LEU PRO ILE GLU GLY THR PRO SEQRES 23 B 303 PRO PRO GLN MET PRO HIS PHE ARG LYS LEU GLU HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS SEQRES 1 C 120 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 120 LEU VAL PRO ARG GLY SER HIS MET PRO ALA ASP PHE GLU SEQRES 3 C 120 THR ASP GLU SER VAL LEU MET ARG ARG GLN LYS GLN ILE SEQRES 4 C 120 ASN TYR GLY LYS ASN THR ILE ALA TYR ASP ARG TYR ILE SEQRES 5 C 120 LYS GLU VAL PRO ARG HIS LEU ARG GLN PRO GLY ILE HIS SEQRES 6 C 120 PRO LYS TPO PRO ASN LYS PHE LYS LYS TYR SER ARG ARG SEQRES 7 C 120 SER TRP ASP GLN GLN ILE LYS LEU TRP LYS VAL ALA LEU SEQRES 8 C 120 HIS PHE TRP ASP PRO PRO ALA GLU GLU GLY CYS ASP LEU SEQRES 9 C 120 GLN GLU ILE HIS PRO VAL ASP LEU GLU SER ALA GLU SER SEQRES 10 C 120 SER SER GLU SEQRES 1 D 26 C C A A A G G C U C U U U SEQRES 2 D 26 U C A G A G C C A C C C A SEQRES 1 E 303 THR SER SER ALA SER ASP PHE SER ASP PRO VAL TYR LYS SEQRES 2 E 303 GLU ILE ALA ILE THR ASN GLY CYS ILE ASN ARG MET SER SEQRES 3 E 303 LYS GLU GLU LEU ARG ALA LYS LEU SER GLU PHE LYS LEU SEQRES 4 E 303 GLU THR ARG GLY VAL LYS ASP VAL LEU LYS LYS ARG LEU SEQRES 5 E 303 LYS ASN TYR TYR LYS LYS GLN LYS LEU MET LEU LYS GLU SEQRES 6 E 303 SER ASN PHE ALA ASP SER TYR TYR ASP TYR ILE CYS ILE SEQRES 7 E 303 ILE ASP PHE GLU ALA THR CYS GLU GLU GLY ASN PRO PRO SEQRES 8 E 303 GLU PHE VAL HIS GLU ILE ILE GLU PHE PRO VAL VAL LEU SEQRES 9 E 303 LEU ASN THR HIS THR LEU GLU ILE GLU ASP THR PHE GLN SEQRES 10 E 303 GLN TYR VAL ARG PRO GLU ILE ASN THR GLN LEU SER ASP SEQRES 11 E 303 PHE CYS ILE SER LEU THR GLY ILE THR GLN ASP GLN VAL SEQRES 12 E 303 ASP ARG ALA ASP THR PHE PRO GLN VAL LEU LYS LYS VAL SEQRES 13 E 303 ILE ASP TRP MET LYS LEU LYS GLU LEU GLY THR LYS TYR SEQRES 14 E 303 LYS TYR SER LEU LEU THR ASP GLY SER TRP ASP MET SER SEQRES 15 E 303 LYS PHE LEU ASN ILE GLN CYS GLN LEU SER ARG LEU LYS SEQRES 16 E 303 TYR PRO PRO PHE ALA LYS LYS TRP ILE ASN ILE ARG LYS SEQRES 17 E 303 SER TYR GLY ASN PHE TYR LYS VAL PRO ARG SER GLN THR SEQRES 18 E 303 LYS LEU THR ILE MET LEU GLU LYS LEU GLY MET ASP TYR SEQRES 19 E 303 ASP GLY ARG PRO HIS CYS GLY LEU ASP ASP SER LYS ASN SEQRES 20 E 303 ILE ALA ARG ILE ALA VAL ARG MET LEU GLN ASP GLY CYS SEQRES 21 E 303 GLU LEU ARG ILE ASN GLU LYS MET HIS ALA GLY GLN LEU SEQRES 22 E 303 MET SER VAL SER SER SER LEU PRO ILE GLU GLY THR PRO SEQRES 23 E 303 PRO PRO GLN MET PRO HIS PHE ARG LYS LEU GLU HIS HIS SEQRES 24 E 303 HIS HIS HIS HIS MODRES 4QOZ TPO C 171 THR PHOSPHOTHREONINE HET TPO C 171 11 HETNAM TPO PHOSPHOTHREONINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 3 TPO C4 H10 N O6 P FORMUL 6 HOH *297(H2 O) HELIX 1 1 ASP B 63 ARG B 78 1 16 HELIX 2 2 SER B 80 PHE B 91 1 12 HELIX 3 3 VAL B 98 LEU B 115 1 18 HELIX 4 4 SER B 183 GLY B 191 1 9 HELIX 5 5 THR B 193 ARG B 199 1 7 HELIX 6 6 THR B 202 LYS B 217 1 16 HELIX 7 7 SER B 232 LYS B 237 1 6 HELIX 8 8 LYS B 237 SER B 246 1 10 HELIX 9 9 PRO B 251 ALA B 254 5 4 HELIX 10 10 ILE B 260 LYS B 269 1 10 HELIX 11 11 LYS B 276 LEU B 284 1 9 HELIX 12 12 CYS B 294 ASP B 312 1 19 HELIX 13 13 ASP C 131 ASN C 147 1 17 HELIX 14 14 THR C 148 VAL C 158 1 11 HELIX 15 15 SER C 179 HIS C 195 1 17 HELIX 16 16 PHE C 196 ASP C 198 5 3 HELIX 17 17 ASP E 63 ARG E 78 1 16 HELIX 18 18 SER E 80 PHE E 91 1 12 HELIX 19 19 VAL E 98 MET E 116 1 19 HELIX 20 20 SER E 183 GLY E 191 1 9 HELIX 21 21 THR E 193 ARG E 199 1 7 HELIX 22 22 THR E 202 LYS E 217 1 16 HELIX 23 23 SER E 232 LYS E 237 1 6 HELIX 24 24 LYS E 237 ARG E 247 1 11 HELIX 25 25 PRO E 251 ALA E 254 5 4 HELIX 26 26 ILE E 260 LYS E 269 1 10 HELIX 27 27 LYS E 276 LEU E 284 1 9 HELIX 28 28 CYS E 294 ASP E 312 1 19 SHEET 1 A 3 GLU B 136 ALA B 137 0 SHEET 2 A 3 ILE B 151 ASN B 160 -1 O ILE B 152 N GLU B 136 SHEET 3 A 3 ILE B 166 TYR B 173 -1 O GLN B 172 N PHE B 154 SHEET 1 B 7 GLU B 136 ALA B 137 0 SHEET 2 B 7 ILE B 151 ASN B 160 -1 O ILE B 152 N GLU B 136 SHEET 3 B 7 TYR B 129 ILE B 132 -1 N ILE B 132 O VAL B 157 SHEET 4 B 7 TYR B 225 THR B 229 1 O LEU B 228 N CYS B 131 SHEET 5 B 7 LYS B 256 ASN B 259 1 O ILE B 258 N LEU B 227 SHEET 6 B 7 GLU B 320 HIS B 323 -1 O GLU B 320 N TRP B 257 SHEET 7 B 7 GLN B 326 SER B 329 -1 O MET B 328 N LYS B 321 SHEET 1 C 3 GLU E 136 ALA E 137 0 SHEET 2 C 3 ILE E 151 ASN E 160 -1 O ILE E 152 N GLU E 136 SHEET 3 C 3 ILE E 166 TYR E 173 -1 O ASP E 168 N LEU E 158 SHEET 1 D 7 GLU E 136 ALA E 137 0 SHEET 2 D 7 ILE E 151 ASN E 160 -1 O ILE E 152 N GLU E 136 SHEET 3 D 7 TYR E 129 ILE E 132 -1 N ILE E 132 O VAL E 157 SHEET 4 D 7 TYR E 225 THR E 229 1 O SER E 226 N CYS E 131 SHEET 5 D 7 LYS E 256 ASN E 259 1 O ILE E 258 N LEU E 227 SHEET 6 D 7 GLU E 320 HIS E 323 -1 O GLU E 320 N TRP E 257 SHEET 7 D 7 GLN E 326 SER E 329 -1 O GLN E 326 N HIS E 323 LINK C LYS C 170 N TPO C 171 1555 1555 1.33 LINK C TPO C 171 N PRO C 172 1555 1555 1.35 CRYST1 82.107 91.505 128.722 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007769 0.00000