PDB Short entry for 4QPA HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-JUN-14 4QPA TITLE CRYSTAL STRUCTURE OF ERK2 IN COMPLEX WITH 7-(1-BENZYL-1H-PYRAZOL-4- TITLE 2 YL)-2-(PYRIDIN-4-YL)-5H-PYRROLO[2,3-B]PYRAZINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED COMPND 5 KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED COMPND 6 PROTEIN KINASE 2, MAP KINASE 2, MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.YIN,W.WANG REVDAT 2 16-DEC-15 4QPA 1 JRNL REVDAT 1 23-SEP-15 4QPA 0 JRNL AUTH D.J.BURDICK,S.WANG,C.HEISE,B.PAN,J.DRUMMOND,J.YIN,L.GOESER, JRNL AUTH 2 S.MAGNUSON,J.BLANEY,J.MOFFAT,W.WANG,H.CHEN JRNL TITL FRAGMENT-BASED DISCOVERY OF POTENT ERK2 PYRROLOPYRAZINE JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 4728 2015 JRNL REFN ISSN 0960-894X JRNL PMID 26338362 JRNL DOI 10.1016/J.BMCL.2015.08.048 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3549 - 7.0227 0.99 2718 112 0.1955 0.2153 REMARK 3 2 7.0227 - 5.5766 1.00 2714 110 0.2230 0.2605 REMARK 3 3 5.5766 - 4.8724 1.00 2700 129 0.1938 0.2133 REMARK 3 4 4.8724 - 4.4272 1.00 2710 161 0.1712 0.2233 REMARK 3 5 4.4272 - 4.1101 1.00 2666 168 0.1903 0.2482 REMARK 3 6 4.1101 - 3.8679 1.00 2724 142 0.1878 0.2349 REMARK 3 7 3.8679 - 3.6742 1.00 2664 168 0.1896 0.2551 REMARK 3 8 3.6742 - 3.5143 1.00 2724 135 0.2081 0.2313 REMARK 3 9 3.5143 - 3.3791 1.00 2672 156 0.2282 0.2717 REMARK 3 10 3.3791 - 3.2625 1.00 2688 139 0.2352 0.2701 REMARK 3 11 3.2625 - 3.1605 1.00 2674 137 0.2482 0.2944 REMARK 3 12 3.1605 - 3.0702 1.00 2673 144 0.2501 0.2856 REMARK 3 13 3.0702 - 2.9893 1.00 2715 148 0.2681 0.3145 REMARK 3 14 2.9893 - 2.9164 1.00 2697 153 0.3004 0.3276 REMARK 3 15 2.9164 - 2.8501 0.99 2635 152 0.3189 0.3402 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5731 REMARK 3 ANGLE : 0.906 7769 REMARK 3 CHIRALITY : 0.071 846 REMARK 3 PLANARITY : 0.004 993 REMARK 3 DIHEDRAL : 13.327 2153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESID 10:108 OR RESID 335:355 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3381 -61.9083 -53.4756 REMARK 3 T TENSOR REMARK 3 T11: 0.3997 T22: 0.2665 REMARK 3 T33: 0.3897 T12: 0.1413 REMARK 3 T13: -0.0626 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.4801 L22: 0.4328 REMARK 3 L33: 0.9102 L12: -0.2011 REMARK 3 L13: 0.1872 L23: 0.1206 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: -0.0016 S13: 0.0155 REMARK 3 S21: 0.1886 S22: 0.1020 S23: -0.2858 REMARK 3 S31: 0.4225 S32: 0.0118 S33: -0.0054 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 109:334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2833 -42.0216 -62.8573 REMARK 3 T TENSOR REMARK 3 T11: 0.3633 T22: 0.3883 REMARK 3 T33: 0.3360 T12: 0.0119 REMARK 3 T13: -0.0306 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.4007 L22: 1.3675 REMARK 3 L33: 3.1129 L12: -0.1520 REMARK 3 L13: 0.6154 L23: 0.9227 REMARK 3 S TENSOR REMARK 3 S11: -0.1495 S12: -0.0436 S13: 0.0017 REMARK 3 S21: 0.0061 S22: 0.0363 S23: 0.1004 REMARK 3 S31: -0.3674 S32: -0.4420 S33: -0.0128 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND (RESID 10:108 OR RESID 335:358 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3914 -28.8278 -18.5307 REMARK 3 T TENSOR REMARK 3 T11: -0.0227 T22: 0.3547 REMARK 3 T33: 0.3728 T12: 0.6439 REMARK 3 T13: 0.1345 T23: 0.1940 REMARK 3 L TENSOR REMARK 3 L11: 2.2409 L22: 2.5229 REMARK 3 L33: 1.4141 L12: 0.4464 REMARK 3 L13: 0.5996 L23: 0.8263 REMARK 3 S TENSOR REMARK 3 S11: -0.9293 S12: -0.3895 S13: -0.2569 REMARK 3 S21: -0.2530 S22: 1.0621 S23: 0.5844 REMARK 3 S31: -0.1197 S32: 0.5875 S33: 0.0584 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 109:334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0257 -31.7709 -27.5464 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.2552 REMARK 3 T33: 0.2676 T12: 0.0331 REMARK 3 T13: 0.0155 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 2.2544 L22: 1.8743 REMARK 3 L33: 1.7254 L12: -0.3327 REMARK 3 L13: 0.3018 L23: -0.4091 REMARK 3 S TENSOR REMARK 3 S11: -0.1260 S12: -0.1401 S13: 0.1221 REMARK 3 S21: 0.0109 S22: 0.0183 S23: -0.1543 REMARK 3 S31: -0.0204 S32: 0.1963 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-14. REMARK 100 THE RCSB ID CODE IS RCSB086341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23246 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.94600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.35150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.35150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.97300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.35150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.35150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 206.91900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.35150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.35150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.97300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.35150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.35150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 206.91900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 137.94600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 14 REMARK 465 GLN A 15 REMARK 465 VAL A 16 REMARK 465 THR A 179 REMARK 465 GLY A 180 REMARK 465 PHE A 181 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 GLU A 248 REMARK 465 ASP A 249 REMARK 465 LEU A 250 REMARK 465 ASN A 251 REMARK 465 CYS A 252 REMARK 465 ILE A 253 REMARK 465 TYR A 356 REMARK 465 ARG A 357 REMARK 465 SER A 358 REMARK 465 MET B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 PRO B 9 REMARK 465 THR B 179 REMARK 465 GLY B 180 REMARK 465 ASP B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 18 CG OD1 OD2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 HIS A 178 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 178 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 181 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 22 OD1 ASP A 42 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 266 C - N - CA ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 11 -150.50 -160.73 REMARK 500 VAL A 12 -83.69 -110.58 REMARK 500 THR A 24 -169.70 -127.12 REMARK 500 ASN A 25 56.82 21.49 REMARK 500 VAL A 37 80.78 46.58 REMARK 500 HIS A 59 -161.86 -118.80 REMARK 500 MET A 96 101.04 -58.79 REMARK 500 THR A 108 -164.42 -161.70 REMARK 500 ARG A 146 -5.49 70.00 REMARK 500 ASP A 147 40.63 -141.98 REMARK 500 ASP A 165 81.68 57.93 REMARK 500 ASP A 173 77.98 -164.12 REMARK 500 GLU A 184 93.14 58.49 REMARK 500 ASN A 199 28.58 45.98 REMARK 500 ALA A 258 -160.84 -103.46 REMARK 500 ASN A 260 -27.13 70.58 REMARK 500 SER A 264 71.06 -68.65 REMARK 500 LEU A 265 -132.64 -125.81 REMARK 500 PHE A 329 160.72 -39.51 REMARK 500 ASP A 330 30.03 -72.00 REMARK 500 ASN B 25 70.30 46.59 REMARK 500 SER B 27 110.63 -163.54 REMARK 500 ILE B 29 -88.13 -131.62 REMARK 500 GLU B 31 -144.89 -134.57 REMARK 500 ARG B 146 -15.95 70.97 REMARK 500 ASP B 165 82.12 64.38 REMARK 500 ASP B 173 82.05 -161.15 REMARK 500 ASP B 175 50.18 -93.99 REMARK 500 HIS B 176 119.90 -173.43 REMARK 500 ASP B 177 90.91 62.93 REMARK 500 LEU B 182 -96.36 -137.76 REMARK 500 THR B 183 -107.87 -149.30 REMARK 500 TYR B 185 78.38 48.78 REMARK 500 LEU B 198 -90.00 -95.11 REMARK 500 SER B 200 -82.65 -56.35 REMARK 500 LYS B 201 -153.98 50.09 REMARK 500 LEU B 250 -73.44 -63.80 REMARK 500 ASN B 251 -29.99 -23.95 REMARK 500 LYS B 270 108.42 -59.97 REMARK 500 LEU B 292 48.08 -106.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 37 21.6 L L OUTSIDE RANGE REMARK 500 ASN A 260 23.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 35W A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 35W B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QP1 RELATED DB: PDB REMARK 900 RELATED ID: 4QP2 RELATED DB: PDB REMARK 900 RELATED ID: 4QP3 RELATED DB: PDB REMARK 900 RELATED ID: 4QP4 RELATED DB: PDB REMARK 900 RELATED ID: 4QP6 RELATED DB: PDB REMARK 900 RELATED ID: 4QP7 RELATED DB: PDB REMARK 900 RELATED ID: 4QP8 RELATED DB: PDB REMARK 900 RELATED ID: 4QP9 RELATED DB: PDB REMARK 900 RELATED ID: 4QPA RELATED DB: PDB DBREF 4QPA A -1 358 UNP P28482 MK01_HUMAN 1 360 DBREF 4QPA B -1 358 UNP P28482 MK01_HUMAN 1 360 SEQADV 4QPA MET A -10 UNP P28482 EXPRESSION TAG SEQADV 4QPA GLY A -9 UNP P28482 EXPRESSION TAG SEQADV 4QPA SER A -8 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS A -7 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS A -6 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS A -5 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS A -4 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS A -3 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS A -2 UNP P28482 EXPRESSION TAG SEQADV 4QPA MET B -10 UNP P28482 EXPRESSION TAG SEQADV 4QPA GLY B -9 UNP P28482 EXPRESSION TAG SEQADV 4QPA SER B -8 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS B -7 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS B -6 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS B -5 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS B -4 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS B -3 UNP P28482 EXPRESSION TAG SEQADV 4QPA HIS B -2 UNP P28482 EXPRESSION TAG SEQRES 1 A 369 MET GLY SER HIS HIS HIS HIS HIS HIS MET ALA ALA ALA SEQRES 2 A 369 ALA ALA ALA GLY ALA GLY PRO GLU MET VAL ARG GLY GLN SEQRES 3 A 369 VAL PHE ASP VAL GLY PRO ARG TYR THR ASN LEU SER TYR SEQRES 4 A 369 ILE GLY GLU GLY ALA TYR GLY MET VAL CYS SER ALA TYR SEQRES 5 A 369 ASP ASN VAL ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SEQRES 6 A 369 SER PRO PHE GLU HIS GLN THR TYR CYS GLN ARG THR LEU SEQRES 7 A 369 ARG GLU ILE LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN SEQRES 8 A 369 ILE ILE GLY ILE ASN ASP ILE ILE ARG ALA PRO THR ILE SEQRES 9 A 369 GLU GLN MET LYS ASP VAL TYR ILE VAL GLN ASP LEU MET SEQRES 10 A 369 GLU THR ASP LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SEQRES 11 A 369 SER ASN ASP NEP ILE CYS TYR PHE LEU TYR GLN ILE LEU SEQRES 12 A 369 ARG GLY LEU LYS TYR ILE HIS SER ALA ASN VAL LEU HIS SEQRES 13 A 369 ARG ASP LEU LYS PRO SER ASN LEU LEU LEU ASN THR THR SEQRES 14 A 369 CYS ASP LEU LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL SEQRES 15 A 369 ALA ASP PRO ASP HIS ASP HIS THR GLY PHE LEU THR GLU SEQRES 16 A 369 TYR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET SEQRES 17 A 369 LEU ASN SER LYS GLY TYR THR LYS SER ILE ASP ILE TRP SEQRES 18 A 369 SER VAL GLY CYS ILE LEU ALA GLU MET LEU SER ASN ARG SEQRES 19 A 369 PRO ILE PHE PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN SEQRES 20 A 369 HIS ILE LEU GLY ILE LEU GLY SER PRO SER GLN GLU ASP SEQRES 21 A 369 LEU ASN CYS ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU SEQRES 22 A 369 LEU SER LEU PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG SEQRES 23 A 369 LEU PHE PRO ASN ALA ASP SER LYS ALA LEU ASP LEU LEU SEQRES 24 A 369 ASP LYS MET LEU THR PHE ASN PRO HIS LYS ARG ILE GLU SEQRES 25 A 369 VAL GLU GLN ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR SEQRES 26 A 369 TYR ASP PRO SER ASP GLU PRO ILE ALA GLU ALA PRO PHE SEQRES 27 A 369 LYS PHE ASP MET GLU LEU ASP ASP LEU PRO LYS GLU LYS SEQRES 28 A 369 LEU LYS GLU LEU ILE PHE GLU GLU THR ALA ARG PHE GLN SEQRES 29 A 369 PRO GLY TYR ARG SER SEQRES 1 B 369 MET GLY SER HIS HIS HIS HIS HIS HIS MET ALA ALA ALA SEQRES 2 B 369 ALA ALA ALA GLY ALA GLY PRO GLU MET VAL ARG GLY GLN SEQRES 3 B 369 VAL PHE ASP VAL GLY PRO ARG TYR THR ASN LEU SER TYR SEQRES 4 B 369 ILE GLY GLU GLY ALA TYR GLY MET VAL CYS SER ALA TYR SEQRES 5 B 369 ASP ASN VAL ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SEQRES 6 B 369 SER PRO PHE GLU HIS GLN THR TYR CYS GLN ARG THR LEU SEQRES 7 B 369 ARG GLU ILE LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN SEQRES 8 B 369 ILE ILE GLY ILE ASN ASP ILE ILE ARG ALA PRO THR ILE SEQRES 9 B 369 GLU GLN MET LYS ASP VAL TYR ILE VAL GLN ASP LEU MET SEQRES 10 B 369 GLU THR ASP LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SEQRES 11 B 369 SER ASN ASP NEP ILE CYS TYR PHE LEU TYR GLN ILE LEU SEQRES 12 B 369 ARG GLY LEU LYS TYR ILE HIS SER ALA ASN VAL LEU HIS SEQRES 13 B 369 ARG ASP LEU LYS PRO SER ASN LEU LEU LEU ASN THR THR SEQRES 14 B 369 CYS ASP LEU LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL SEQRES 15 B 369 ALA ASP PRO ASP HIS ASP HIS THR GLY PHE LEU THR GLU SEQRES 16 B 369 TYR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET SEQRES 17 B 369 LEU ASN SER LYS GLY TYR THR LYS SER ILE ASP ILE TRP SEQRES 18 B 369 SER VAL GLY CYS ILE LEU ALA GLU MET LEU SER ASN ARG SEQRES 19 B 369 PRO ILE PHE PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN SEQRES 20 B 369 HIS ILE LEU GLY ILE LEU GLY SER PRO SER GLN GLU ASP SEQRES 21 B 369 LEU ASN CYS ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU SEQRES 22 B 369 LEU SER LEU PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG SEQRES 23 B 369 LEU PHE PRO ASN ALA ASP SER LYS ALA LEU ASP LEU LEU SEQRES 24 B 369 ASP LYS MET LEU THR PHE ASN PRO HIS LYS ARG ILE GLU SEQRES 25 B 369 VAL GLU GLN ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR SEQRES 26 B 369 TYR ASP PRO SER ASP GLU PRO ILE ALA GLU ALA PRO PHE SEQRES 27 B 369 LYS PHE ASP MET GLU LEU ASP ASP LEU PRO LYS GLU LYS SEQRES 28 B 369 LEU LYS GLU LEU ILE PHE GLU GLU THR ALA ARG PHE GLN SEQRES 29 B 369 PRO GLY TYR ARG SER MODRES 4QPA NEP A 123 HIS N1-PHOSPHONOHISTIDINE MODRES 4QPA NEP B 123 HIS N1-PHOSPHONOHISTIDINE HET NEP A 123 14 HET NEP B 123 14 HET 35W A 401 27 HET 35W B 401 27 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM 35W 7-(1-BENZYL-1H-PYRAZOL-4-YL)-2-(PYRIDIN-4-YL)-5H- HETNAM 2 35W PYRROLO[2,3-B]PYRAZINE FORMUL 1 NEP 2(C6 H10 N3 O5 P) FORMUL 3 35W 2(C21 H16 N6) HELIX 1 1 GLN A 60 PHE A 76 1 17 HELIX 2 2 LEU A 110 GLN A 117 1 8 HELIX 3 3 SER A 120 ALA A 141 1 22 HELIX 4 4 LYS A 149 SER A 151 5 3 HELIX 5 5 THR A 188 ARG A 192 5 5 HELIX 6 6 ALA A 193 LEU A 198 1 6 HELIX 7 7 LYS A 205 LEU A 220 1 16 HELIX 8 8 HIS A 230 GLY A 243 1 14 HELIX 9 9 PRO A 272 PHE A 277 1 6 HELIX 10 10 ASP A 281 LEU A 292 1 12 HELIX 11 11 GLU A 301 ALA A 307 1 7 HELIX 12 12 HIS A 308 GLU A 312 5 5 HELIX 13 13 ASP A 316 GLU A 320 5 5 HELIX 14 14 PRO A 337 THR A 349 1 13 HELIX 15 15 ALA A 350 GLN A 353 5 4 HELIX 16 16 HIS B 59 PHE B 76 1 18 HELIX 17 17 LEU B 110 GLN B 117 1 8 HELIX 18 18 SER B 120 ALA B 141 1 22 HELIX 19 19 LYS B 149 SER B 151 5 3 HELIX 20 20 THR B 188 ARG B 192 5 5 HELIX 21 21 ALA B 193 LEU B 198 1 6 HELIX 22 22 LYS B 205 ASN B 222 1 18 HELIX 23 23 HIS B 230 GLY B 243 1 14 HELIX 24 24 SER B 246 CYS B 252 1 7 HELIX 25 25 ASN B 255 LEU B 263 1 9 HELIX 26 26 PRO B 272 PHE B 277 1 6 HELIX 27 27 ASP B 281 LEU B 292 1 12 HELIX 28 28 GLU B 301 ALA B 307 1 7 HELIX 29 29 HIS B 308 GLU B 312 5 5 HELIX 30 30 ASP B 316 GLU B 320 5 5 HELIX 31 31 PRO B 337 THR B 349 1 13 HELIX 32 32 ALA B 350 GLN B 353 5 4 SHEET 1 A 5 TYR A 23 THR A 24 0 SHEET 2 A 5 VAL A 37 ASP A 42 -1 O TYR A 41 N THR A 24 SHEET 3 A 5 VAL A 47 ILE A 54 -1 O VAL A 47 N ASP A 42 SHEET 4 A 5 VAL A 99 ASP A 104 -1 O ILE A 101 N LYS A 52 SHEET 5 A 5 ASP A 86 ILE A 88 -1 N ASP A 86 O VAL A 102 SHEET 1 B 3 THR A 108 ASP A 109 0 SHEET 2 B 3 LEU A 153 THR A 157 -1 O LEU A 155 N THR A 108 SHEET 3 B 3 ASP A 160 ILE A 163 -1 O LYS A 162 N LEU A 154 SHEET 1 C 2 VAL A 143 LEU A 144 0 SHEET 2 C 2 ARG A 170 VAL A 171 -1 O ARG A 170 N LEU A 144 SHEET 1 D 5 TYR B 23 TYR B 28 0 SHEET 2 D 5 VAL B 37 ASP B 42 -1 O TYR B 41 N THR B 24 SHEET 3 D 5 VAL B 47 ILE B 54 -1 O ILE B 51 N CYS B 38 SHEET 4 D 5 VAL B 99 ASP B 104 -1 O VAL B 99 N ILE B 54 SHEET 5 D 5 ASP B 86 ILE B 88 -1 N ASP B 86 O VAL B 102 SHEET 1 E 3 THR B 108 ASP B 109 0 SHEET 2 E 3 LEU B 153 LEU B 155 -1 O LEU B 155 N THR B 108 SHEET 3 E 3 LEU B 161 ILE B 163 -1 O LYS B 162 N LEU B 154 SHEET 1 F 2 VAL B 143 LEU B 144 0 SHEET 2 F 2 ARG B 170 VAL B 171 -1 O ARG B 170 N LEU B 144 LINK C ASP A 122 N NEP A 123 1555 1555 1.33 LINK C NEP A 123 N ILE A 124 1555 1555 1.33 LINK C ASP B 122 N NEP B 123 1555 1555 1.33 LINK C NEP B 123 N ILE B 124 1555 1555 1.33 CISPEP 1 GLY A 20 PRO A 21 0 7.28 CISPEP 2 PRO A 21 ARG A 22 0 2.83 CISPEP 3 MET A 36 VAL A 37 0 -0.75 CISPEP 4 TYR A 185 VAL A 186 0 -11.39 CISPEP 5 ARG A 259 ASN A 260 0 -11.01 CISPEP 6 GLY B 20 PRO B 21 0 0.12 CISPEP 7 ALA B 33 TYR B 34 0 -1.00 CISPEP 8 TYR B 34 GLY B 35 0 2.05 CISPEP 9 HIS B 176 ASP B 177 0 -3.40 CISPEP 10 ASP B 177 HIS B 178 0 3.28 SITE 1 AC1 10 GLY A 32 ALA A 50 LYS A 52 GLN A 103 SITE 2 AC1 10 ASP A 104 MET A 106 ASP A 109 LYS A 112 SITE 3 AC1 10 LEU A 154 CYS A 164 SITE 1 AC2 9 ALA B 33 ALA B 50 GLN B 103 ASP B 104 SITE 2 AC2 9 MET B 106 ASP B 109 LYS B 112 LEU B 154 SITE 3 AC2 9 CYS B 164 CRYST1 82.703 82.703 275.892 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012091 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012091 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003625 0.00000