PDB Short entry for 4R54 HEADER OXIDOREDUCTASE 20-AUG-14 4R54 TITLE COMPLEX CRYSTAL STRUCTURE OF SP-ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE TITLE 2 WITH 3-CARBOXY-ETHYL-PHTHALIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE-SEMIALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASA DEHYDROGENASE, ASADH, ASPARTATE-BETA-SEMIALDEHYDE COMPND 5 DEHYDROGENASE; COMPND 6 EC: 1.2.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 406563; SOURCE 4 STRAIN: SP23-BS72; SOURCE 5 GENE: ASD, CGSSP23BS72_03388; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE, NADP EXPDTA X-RAY DIFFRACTION AUTHOR A.G.PAVLOVSKY,R.E.VIOLA REVDAT 4 20-SEP-23 4R54 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4R54 1 REMARK REVDAT 2 31-DEC-14 4R54 1 JRNL REVDAT 1 10-DEC-14 4R54 0 JRNL AUTH A.G.PAVLOVSKY,B.THANGAVELU,P.BHANSALI,R.E.VIOLA JRNL TITL A CAUTIONARY TALE OF STRUCTURE-GUIDED INHIBITOR DEVELOPMENT JRNL TITL 2 AGAINST AN ESSENTIAL ENZYME IN THE ASPARTATE-BIOSYNTHETIC JRNL TITL 3 PATHWAY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 3244 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25478842 JRNL DOI 10.1107/S1399004714023979 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 62262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3303 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4316 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5448 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10000 REMARK 3 B22 (A**2) : 1.56000 REMARK 3 B33 (A**2) : -3.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.884 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5769 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5497 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7872 ; 1.377 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12688 ; 0.745 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 726 ; 5.972 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;34.096 ;24.914 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 963 ;13.021 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.531 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 914 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6436 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1211 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2873 ; 1.829 ; 3.695 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2870 ; 1.826 ; 3.693 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3590 ; 2.562 ; 5.533 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3591 ; 2.562 ; 5.534 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2896 ; 2.401 ; 4.035 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2893 ; 2.400 ; 4.035 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4274 ; 3.717 ; 5.932 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6422 ; 5.024 ;29.996 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6423 ; 5.024 ;29.999 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4R54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR AND REMARK 200 K-B PAIR OF BIOMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80800 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FOURIER SYNTHESIS REMARK 200 STARTING MODEL: 4R3N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-22% PEG 3350, 0.1 M NA-ACETATE, 0.1 REMARK 280 M MES (PH 6.5), 10 MM TCEP, 3% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.40300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 359 REMARK 465 GLU A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 MET B 1 REMARK 465 LEU B 359 REMARK 465 GLU B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 465 HIS B 365 REMARK 465 HIS B 366 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 512 O HOH A 553 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 36 -149.07 -151.80 REMARK 500 LYS A 48 -115.13 52.55 REMARK 500 ILE A 189 -61.72 -120.21 REMARK 500 PRO A 207 48.48 -83.24 REMARK 500 ASP A 210 -174.08 67.14 REMARK 500 ASP A 216 -0.10 72.03 REMARK 500 ALA A 251 119.00 90.91 REMARK 500 ASP A 284 82.58 -152.17 REMARK 500 ASP A 312 -47.81 -131.11 REMARK 500 LEU A 327 -94.77 -95.99 REMARK 500 ALA A 330 -81.89 -156.08 REMARK 500 ALA B 36 -150.07 -154.28 REMARK 500 LYS B 48 -124.22 50.97 REMARK 500 ASP B 210 -170.52 64.34 REMARK 500 ASP B 234 97.15 -163.14 REMARK 500 ALA B 251 118.97 94.29 REMARK 500 ASP B 312 -44.63 -133.78 REMARK 500 LEU B 327 -95.61 -104.24 REMARK 500 ALA B 330 -77.57 -152.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 274 O REMARK 620 2 PHE A 276 O 126.5 REMARK 620 3 ALA A 279 O 115.0 93.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 147 OD1 REMARK 620 2 ASP B 147 O 76.2 REMARK 620 3 SER B 236 O 175.4 101.6 REMARK 620 4 HOH B 524 O 96.7 91.7 79.2 REMARK 620 5 HOH B 572 O 87.0 84.9 97.0 174.3 REMARK 620 6 HOH B 602 O 91.1 166.8 90.7 85.8 98.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3JM A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R3N RELATED DB: PDB REMARK 900 RELATED ID: 4R3W RELATED DB: PDB REMARK 900 RELATED ID: 4R51 RELATED DB: PDB REMARK 900 RELATED ID: 4R4J RELATED DB: PDB REMARK 900 RELATED ID: 4R41 RELATED DB: PDB REMARK 900 RELATED ID: 4R5H RELATED DB: PDB REMARK 900 RELATED ID: 4R5M RELATED DB: PDB DBREF 4R54 A 1 358 UNP A5MTN0 A5MTN0_STREE 1 358 DBREF 4R54 B 1 358 UNP A5MTN0 A5MTN0_STREE 1 358 SEQADV 4R54 LEU A 359 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 GLU A 360 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS A 361 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS A 362 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS A 363 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS A 364 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS A 365 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS A 366 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 LEU B 359 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 GLU B 360 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS B 361 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS B 362 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS B 363 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS B 364 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS B 365 UNP A5MTN0 EXPRESSION TAG SEQADV 4R54 HIS B 366 UNP A5MTN0 EXPRESSION TAG SEQRES 1 A 366 MET GLY TYR THR VAL ALA VAL VAL GLY ALA THR GLY ALA SEQRES 2 A 366 VAL GLY ALA GLN MET ILE LYS MET LEU GLU GLU SER THR SEQRES 3 A 366 LEU PRO ILE ASP LYS ILE ARG TYR LEU ALA SER ALA ARG SEQRES 4 A 366 SER ALA GLY LYS SER LEU LYS PHE LYS ASP GLN ASP ILE SEQRES 5 A 366 THR ILE GLU GLU THR THR GLU THR ALA PHE GLU GLY VAL SEQRES 6 A 366 ASP ILE ALA LEU PHE SER ALA GLY SER SER THR SER ALA SEQRES 7 A 366 LYS TYR ALA PRO TYR ALA VAL LYS ALA GLY VAL VAL VAL SEQRES 8 A 366 VAL ASP ASN THR SER TYR PHE ARG GLN ASN PRO ASP VAL SEQRES 9 A 366 PRO LEU VAL VAL PRO GLU VAL ASN ALA HIS ALA LEU ASP SEQRES 10 A 366 ALA HIS ASN GLY ILE ILE ALA CYS PRO ASN CYS SER THR SEQRES 11 A 366 ILE GLN MET MET VAL ALA LEU GLU PRO VAL ARG GLN LYS SEQRES 12 A 366 TRP GLY LEU ASP ARG ILE ILE VAL SER THR TYR GLN ALA SEQRES 13 A 366 VAL SER GLY ALA GLY MET GLY ALA ILE LEU GLU THR GLN SEQRES 14 A 366 ARG GLU LEU ARG GLU VAL LEU ASN ASP GLY VAL LYS PRO SEQRES 15 A 366 CYS ASP LEU HIS ALA GLU ILE LEU PRO SER GLY GLY ASP SEQRES 16 A 366 LYS LYS HIS TYR PRO ILE ALA PHE ASN ALA LEU PRO GLN SEQRES 17 A 366 ILE ASP VAL PHE THR ASP ASN ASP TYR THR TYR GLU GLU SEQRES 18 A 366 MET LYS MET THR LYS GLU THR LYS LYS ILE MET GLU ASP SEQRES 19 A 366 ASP SER ILE ALA VAL SER ALA THR CYS VAL ARG ILE PRO SEQRES 20 A 366 VAL LEU SER ALA HIS SER GLU SER VAL TYR ILE GLU THR SEQRES 21 A 366 LYS GLU VAL ALA PRO ILE GLU GLU VAL LYS ALA ALA ILE SEQRES 22 A 366 ALA ALA PHE PRO GLY ALA VAL LEU GLU ASP ASP VAL ALA SEQRES 23 A 366 HIS GLN ILE TYR PRO GLN ALA ILE ASN ALA VAL GLY SER SEQRES 24 A 366 ARG ASP THR PHE VAL GLY ARG ILE ARG LYS ASP LEU ASP SEQRES 25 A 366 ALA GLU LYS GLY ILE HIS MET TRP VAL VAL SER ASP ASN SEQRES 26 A 366 LEU LEU LYS GLY ALA ALA TRP ASN SER VAL GLN ILE ALA SEQRES 27 A 366 GLU THR LEU HIS GLU ARG GLY LEU VAL ARG PRO THR ALA SEQRES 28 A 366 GLU LEU LYS PHE GLU LEU LYS LEU GLU HIS HIS HIS HIS SEQRES 29 A 366 HIS HIS SEQRES 1 B 366 MET GLY TYR THR VAL ALA VAL VAL GLY ALA THR GLY ALA SEQRES 2 B 366 VAL GLY ALA GLN MET ILE LYS MET LEU GLU GLU SER THR SEQRES 3 B 366 LEU PRO ILE ASP LYS ILE ARG TYR LEU ALA SER ALA ARG SEQRES 4 B 366 SER ALA GLY LYS SER LEU LYS PHE LYS ASP GLN ASP ILE SEQRES 5 B 366 THR ILE GLU GLU THR THR GLU THR ALA PHE GLU GLY VAL SEQRES 6 B 366 ASP ILE ALA LEU PHE SER ALA GLY SER SER THR SER ALA SEQRES 7 B 366 LYS TYR ALA PRO TYR ALA VAL LYS ALA GLY VAL VAL VAL SEQRES 8 B 366 VAL ASP ASN THR SER TYR PHE ARG GLN ASN PRO ASP VAL SEQRES 9 B 366 PRO LEU VAL VAL PRO GLU VAL ASN ALA HIS ALA LEU ASP SEQRES 10 B 366 ALA HIS ASN GLY ILE ILE ALA CYS PRO ASN CYS SER THR SEQRES 11 B 366 ILE GLN MET MET VAL ALA LEU GLU PRO VAL ARG GLN LYS SEQRES 12 B 366 TRP GLY LEU ASP ARG ILE ILE VAL SER THR TYR GLN ALA SEQRES 13 B 366 VAL SER GLY ALA GLY MET GLY ALA ILE LEU GLU THR GLN SEQRES 14 B 366 ARG GLU LEU ARG GLU VAL LEU ASN ASP GLY VAL LYS PRO SEQRES 15 B 366 CYS ASP LEU HIS ALA GLU ILE LEU PRO SER GLY GLY ASP SEQRES 16 B 366 LYS LYS HIS TYR PRO ILE ALA PHE ASN ALA LEU PRO GLN SEQRES 17 B 366 ILE ASP VAL PHE THR ASP ASN ASP TYR THR TYR GLU GLU SEQRES 18 B 366 MET LYS MET THR LYS GLU THR LYS LYS ILE MET GLU ASP SEQRES 19 B 366 ASP SER ILE ALA VAL SER ALA THR CYS VAL ARG ILE PRO SEQRES 20 B 366 VAL LEU SER ALA HIS SER GLU SER VAL TYR ILE GLU THR SEQRES 21 B 366 LYS GLU VAL ALA PRO ILE GLU GLU VAL LYS ALA ALA ILE SEQRES 22 B 366 ALA ALA PHE PRO GLY ALA VAL LEU GLU ASP ASP VAL ALA SEQRES 23 B 366 HIS GLN ILE TYR PRO GLN ALA ILE ASN ALA VAL GLY SER SEQRES 24 B 366 ARG ASP THR PHE VAL GLY ARG ILE ARG LYS ASP LEU ASP SEQRES 25 B 366 ALA GLU LYS GLY ILE HIS MET TRP VAL VAL SER ASP ASN SEQRES 26 B 366 LEU LEU LYS GLY ALA ALA TRP ASN SER VAL GLN ILE ALA SEQRES 27 B 366 GLU THR LEU HIS GLU ARG GLY LEU VAL ARG PRO THR ALA SEQRES 28 B 366 GLU LEU LYS PHE GLU LEU LYS LEU GLU HIS HIS HIS HIS SEQRES 29 B 366 HIS HIS HET NA A 401 1 HET NA A 402 1 HET NAP A 403 48 HET ACT A 404 4 HET 3JM A 405 17 HET NA B 401 1 HET NAP B 402 48 HET NAP B 403 48 HET ACT B 404 4 HETNAM NA SODIUM ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM ACT ACETATE ION HETNAM 3JM 3-(2-CARBOXYETHYL)BENZENE-1,2-DICARBOXYLIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN 3JM 3-CARBOXY-ETHYL-PHTHALIC ACID FORMUL 3 NA 3(NA 1+) FORMUL 5 NAP 3(C21 H28 N7 O17 P3) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 7 3JM C11 H10 O6 FORMUL 12 HOH *262(H2 O) HELIX 1 1 GLY A 12 GLU A 24 1 13 HELIX 2 2 GLY A 73 GLY A 88 1 16 HELIX 3 3 VAL A 108 ALA A 113 1 6 HELIX 4 4 HIS A 114 HIS A 119 5 6 HELIX 5 5 ASN A 127 GLY A 145 1 19 HELIX 6 6 ALA A 156 ALA A 160 5 5 HELIX 7 7 GLY A 161 GLY A 179 1 19 HELIX 8 8 LYS A 181 LEU A 185 5 5 HELIX 9 9 THR A 218 MET A 232 1 15 HELIX 10 10 PRO A 265 ALA A 275 1 11 HELIX 11 11 ASP A 284 GLN A 288 5 5 HELIX 12 12 GLN A 292 VAL A 297 1 6 HELIX 13 13 ALA A 330 ARG A 344 1 15 HELIX 14 14 GLY B 12 GLU B 24 1 13 HELIX 15 15 GLY B 73 ALA B 87 1 15 HELIX 16 16 VAL B 108 ALA B 113 1 6 HELIX 17 17 HIS B 114 HIS B 119 5 6 HELIX 18 18 ASN B 127 GLY B 145 1 19 HELIX 19 19 ALA B 156 ALA B 160 5 5 HELIX 20 20 GLY B 161 GLY B 179 1 19 HELIX 21 21 LYS B 181 LEU B 185 5 5 HELIX 22 22 THR B 218 MET B 232 1 15 HELIX 23 23 PRO B 265 PHE B 276 1 12 HELIX 24 24 ASP B 284 GLN B 288 5 5 HELIX 25 25 GLN B 292 VAL B 297 1 6 HELIX 26 26 ALA B 330 ARG B 344 1 15 SHEET 1 A 7 SER A 44 PHE A 47 0 SHEET 2 A 7 GLN A 50 GLU A 56 -1 O GLN A 50 N PHE A 47 SHEET 3 A 7 ILE A 29 ALA A 36 1 N TYR A 34 O GLU A 55 SHEET 4 A 7 TYR A 3 VAL A 8 1 N VAL A 7 O LEU A 35 SHEET 5 A 7 ILE A 67 PHE A 70 1 O LEU A 69 N VAL A 8 SHEET 6 A 7 VAL A 90 ASP A 93 1 O VAL A 92 N ALA A 68 SHEET 7 A 7 ILE A 122 ALA A 124 1 O ILE A 123 N VAL A 91 SHEET 1 B 6 ALA A 238 THR A 242 0 SHEET 2 B 6 ARG A 148 TYR A 154 1 N THR A 153 O THR A 242 SHEET 3 B 6 HIS A 252 GLU A 259 -1 O TYR A 257 N ILE A 150 SHEET 4 B 6 GLY A 316 SER A 323 -1 O ILE A 317 N ILE A 258 SHEET 5 B 6 THR A 302 LYS A 309 -1 N PHE A 303 O VAL A 322 SHEET 6 B 6 ALA A 279 LEU A 281 1 N VAL A 280 O THR A 302 SHEET 1 C 6 GLU B 55 GLU B 56 0 SHEET 2 C 6 ILE B 29 ALA B 36 1 N TYR B 34 O GLU B 55 SHEET 3 C 6 TYR B 3 VAL B 8 1 N VAL B 7 O LEU B 35 SHEET 4 C 6 ILE B 67 PHE B 70 1 O LEU B 69 N ALA B 6 SHEET 5 C 6 VAL B 90 ASP B 93 1 O VAL B 92 N ALA B 68 SHEET 6 C 6 ILE B 122 ALA B 124 1 O ILE B 123 N VAL B 91 SHEET 1 D 2 SER B 44 PHE B 47 0 SHEET 2 D 2 GLN B 50 THR B 53 -1 O GLN B 50 N PHE B 47 SHEET 1 E 6 ALA B 238 ARG B 245 0 SHEET 2 E 6 ARG B 148 GLN B 155 1 N ILE B 149 O ALA B 238 SHEET 3 E 6 HIS B 252 GLU B 259 -1 O SER B 253 N TYR B 154 SHEET 4 E 6 GLY B 316 SER B 323 -1 O ILE B 317 N ILE B 258 SHEET 5 E 6 THR B 302 LYS B 309 -1 N PHE B 303 O VAL B 322 SHEET 6 E 6 ALA B 279 LEU B 281 1 N VAL B 280 O THR B 302 LINK O ALA A 274 NA NA A 401 1555 1555 2.40 LINK O PHE A 276 NA NA A 401 1555 1555 2.21 LINK O ALA A 279 NA NA A 401 1555 1555 2.25 LINK O GLU A 343 NA NA A 402 1555 1555 2.27 LINK OD1 ASP B 147 NA NA B 401 1555 1555 2.44 LINK O ASP B 147 NA NA B 401 1555 1555 2.53 LINK O SER B 236 NA NA B 401 1555 1555 2.38 LINK NA NA B 401 O HOH B 524 1555 1555 2.50 LINK NA NA B 401 O HOH B 572 1555 1555 2.27 LINK NA NA B 401 O HOH B 602 1555 1555 2.34 CISPEP 1 LEU A 190 PRO A 191 0 2.86 CISPEP 2 LEU B 190 PRO B 191 0 3.75 SITE 1 AC1 6 ILE A 273 ALA A 274 PHE A 276 ALA A 279 SITE 2 AC1 6 GLU B 343 HOH B 591 SITE 1 AC2 6 GLU A 343 ILE B 273 ALA B 274 PHE B 276 SITE 2 AC2 6 ALA B 279 HOH B 612 SITE 1 AC3 30 GLY A 9 THR A 11 GLY A 12 ALA A 13 SITE 2 AC3 30 VAL A 14 ALA A 36 SER A 37 ARG A 39 SITE 3 AC3 30 SER A 40 THR A 57 SER A 71 ALA A 72 SITE 4 AC3 30 GLY A 73 THR A 76 ASN A 94 THR A 95 SITE 5 AC3 30 ARG A 99 PRO A 126 ASN A 127 CYS A 128 SITE 6 AC3 30 GLY A 161 MET A 162 GLY A 329 3JM A 405 SITE 7 AC3 30 HOH A 570 HOH A 571 HOH A 585 HOH A 608 SITE 8 AC3 30 HOH A 625 HOH A 633 SITE 1 AC4 8 ASN A 127 CYS A 128 GLN A 155 GLY A 159 SITE 2 AC4 8 GLU A 220 ARG A 245 HIS A 252 3JM A 405 SITE 1 AC5 11 GLY A 73 SER A 74 THR A 95 SER A 96 SITE 2 AC5 11 ARG A 99 ASN A 127 GLY A 159 LYS A 223 SITE 3 AC5 11 NAP A 403 ACT A 404 HOH A 552 SITE 1 AC6 5 ASP B 147 SER B 236 HOH B 524 HOH B 572 SITE 2 AC6 5 HOH B 602 SITE 1 AC7 15 GLY B 9 THR B 11 GLY B 12 ALA B 13 SITE 2 AC7 15 ALA B 36 SER B 37 ARG B 39 SER B 40 SITE 3 AC7 15 THR B 57 ALA B 72 THR B 76 GLY B 161 SITE 4 AC7 15 MET B 162 GLY B 163 NAP B 403 SITE 1 AC8 25 GLY B 9 THR B 11 GLY B 12 ALA B 13 SITE 2 AC8 25 VAL B 14 ALA B 36 SER B 37 SER B 40 SITE 3 AC8 25 THR B 57 SER B 71 ALA B 72 GLY B 73 SITE 4 AC8 25 THR B 76 ASN B 94 THR B 95 PRO B 126 SITE 5 AC8 25 ASN B 127 CYS B 128 GLY B 161 MET B 162 SITE 6 AC8 25 GLY B 329 NAP B 402 ACT B 404 HOH B 584 SITE 7 AC8 25 HOH B 595 SITE 1 AC9 4 ARG B 99 ASN B 127 LYS B 223 NAP B 403 CRYST1 59.537 98.806 64.098 90.00 101.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016796 0.000000 0.003312 0.00000 SCALE2 0.000000 0.010121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015902 0.00000