PDB Short entry for 4R79 HEADER RECOMBINATION/DNA 27-AUG-14 4R79 TITLE MOS1 TRANSPOSASE PAIRED-END COMPLEX WITH LEFT TRANSPOSON END COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEFT INVERTED REPEAT NTS; COMPND 3 CHAIN: C, E, G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LEFT INVERTED REPEAT TS; COMPND 7 CHAIN: D, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LEFT INVERTED REPEAT NTS H; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: MARINER MOS1 TRANSPOSASE; COMPND 15 CHAIN: A, B; COMPND 16 SYNONYM: TRANSPOSABLE ELEMENT MOS1 TRANSPOSASE; COMPND 17 EC: 3.1.-.-; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: SYNTHESISED BY IDT; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 OTHER_DETAILS: SYNTHESISED BY IDT; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: SYNTHESISED BY IDT; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: DROSOPHILA MAURITIANA; SOURCE 18 ORGANISM_COMMON: FRUIT FLY; SOURCE 19 ORGANISM_TAXID: 7226; SOURCE 20 GENE: MARINER\T, T; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 23 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSPOSASE, PROTEIN-DNA COMPLEX, TRANSPOSOSOME, RNASE-H LIKE KEYWDS 2 CATALYTIC FOLD HELIX-TURN-HELIX, DNA TRANSPOSITION, DNA CLEAVAGE, KEYWDS 3 DNA INTEGRATION, TRANSPOSON, INVERTED REPEATS, RECOMBINATION-DNA KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.RICHARDSON REVDAT 3 20-SEP-23 4R79 1 REMARK SEQADV LINK REVDAT 2 10-JUN-15 4R79 1 JRNL REVDAT 1 22-APR-15 4R79 0 JRNL AUTH M.TRUBITSYNA,H.GREY,D.R.HOUSTON,D.J.FINNEGAN,J.M.RICHARDSON JRNL TITL STRUCTURAL BASIS FOR THE INVERTED REPEAT PREFERENCES OF JRNL TITL 2 MARINER TRANSPOSASES. JRNL REF J.BIOL.CHEM. V. 290 13531 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25869132 JRNL DOI 10.1074/JBC.M115.636704 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 46335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2444 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3314 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.4110 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5606 REMARK 3 NUCLEIC ACID ATOMS : 3230 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.81000 REMARK 3 B22 (A**2) : 7.36000 REMARK 3 B33 (A**2) : -9.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.646 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.373 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.352 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9382 ; 0.004 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13360 ; 0.851 ; 1.620 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 668 ; 4.878 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 310 ;30.776 ;23.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1030 ;15.903 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;16.229 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1268 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6123 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2214 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2684 ; 5.817 ; 6.871 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2691 ;10.322 ; 6.412 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3348 ; 9.376 ;10.284 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6698 ; 7.676 ; 7.773 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 345 2 REMARK 3 1 B 4 B 345 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3526 ; 0.080 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 1986 ; 7.370 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3526 ; 8.710 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 4 C 28 1 REMARK 3 1 E 4 E 28 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 2 C (A**2): 707 ; 6.470 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : D F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 D 29 D 56 1 REMARK 3 1 F 29 F 56 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 3 D (A**2): 878 ; 6.700 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48795 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, DM REMARK 200 STARTING MODEL: PDB ENTRY 3HOS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE PH 5.8, 100 MM REMARK 280 AMMONIUM ACETATE, 450 MM KCL, AND 5 MM MNCL2, HANGING DROP, REMARK 280 TEMPERATURE 290K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.44250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, G, H, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 PHE A 4 REMARK 465 GLN A 238 REMARK 465 LYS A 239 REMARK 465 ARG A 240 REMARK 465 GLN A 241 REMARK 465 HIS A 242 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 PHE B 4 REMARK 465 GLN B 238 REMARK 465 LYS B 239 REMARK 465 ARG B 240 REMARK 465 GLN B 241 REMARK 465 HIS B 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' DG D 56 OP2 DT H 54 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 41 152.75 -40.16 REMARK 500 GLN A 199 -2.95 -56.03 REMARK 500 PRO A 210 -74.77 -24.85 REMARK 500 THR A 265 4.02 -68.40 REMARK 500 HIS A 286 -67.76 -123.99 REMARK 500 GLU A 297 11.51 53.06 REMARK 500 ASP B 62 171.03 -54.98 REMARK 500 GLN B 199 -12.62 -47.97 REMARK 500 PRO B 210 -84.36 -28.65 REMARK 500 ARG B 234 76.96 -113.77 REMARK 500 ASN B 250 36.18 -82.19 REMARK 500 HIS B 286 -50.38 -133.90 REMARK 500 GLU B 297 18.12 47.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN H 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC H 53 O3' REMARK 620 2 ASP B 156 OD1 123.8 REMARK 620 3 ASP B 249 OD2 112.1 124.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD2 REMARK 620 2 ASP A 249 OD2 106.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN H 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F7T RELATED DB: PDB REMARK 900 MOS1 TRANSPOSASE CATALYTIC DOMAIN REMARK 900 RELATED ID: 3HOS RELATED DB: PDB REMARK 900 MOS1 PEC WITH IRR AND MG REMARK 900 RELATED ID: 3HOT RELATED DB: PDB REMARK 900 MOS1 PEC WITH IRR AND MN REMARK 900 RELATED ID: 4U7B RELATED DB: PDB REMARK 900 MOS1 PRE-CLEAVAGE PEC REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT ENTRY SEQUENCE OF 4R79 IS CORRECT FOR MOS1. THE REMARK 999 REFERENCE J7JQ07 ACTUALLY REFERS TO THE PEACH ELEMENT RATHER THAN REMARK 999 MOS1. THE ENTRY SEQUENCE HAS 4 DIFFERENCES AGAINST J7JQ07, AS REMARK 999 INDICATED IN FIGURE 2 OF THE PAPER BY MEDHORA ET AL IN GENETICS 128: REMARK 999 311-318 JUNE,1991. PMCID:PMC1204469. THESE 4 DIFFERENCES SEEM TO REMARK 999 MATCH WITH THE VARIANTS HIGHLIGHTED. DBREF 4R79 A 1 345 UNP Q7JQ07 MOS1T_DROMA 1 345 DBREF 4R79 B 1 345 UNP Q7JQ07 MOS1T_DROMA 1 345 DBREF 4R79 C 4 28 PDB 4R79 4R79 4 28 DBREF 4R79 E 4 28 PDB 4R79 4R79 4 28 DBREF 4R79 G 4 28 PDB 4R79 4R79 4 28 DBREF 4R79 D 29 56 PDB 4R79 4R79 29 56 DBREF 4R79 F 29 56 PDB 4R79 4R79 29 56 DBREF 4R79 H 29 55 PDB 4R79 4R79 29 55 SEQADV 4R79 THR A 45 UNP Q7JQ07 LYS 45 VARIANT SEQADV 4R79 ASN A 164 UNP Q7JQ07 SER 164 VARIANT SEQADV 4R79 PRO A 210 UNP Q7JQ07 ARG 210 VARIANT SEQADV 4R79 ALA A 216 UNP Q7JQ07 THR 216 ENGINEERED MUTATION SEQADV 4R79 PHE A 344 UNP Q7JQ07 LEU 344 VARIANT SEQADV 4R79 THR B 45 UNP Q7JQ07 LYS 45 VARIANT SEQADV 4R79 ASN B 164 UNP Q7JQ07 SER 164 VARIANT SEQADV 4R79 PRO B 210 UNP Q7JQ07 ARG 210 VARIANT SEQADV 4R79 ALA B 216 UNP Q7JQ07 THR 216 ENGINEERED MUTATION SEQADV 4R79 PHE B 344 UNP Q7JQ07 LEU 344 VARIANT SEQRES 1 C 25 DG DG DT DG DT DA DC DA DA DG DT DA DG SEQRES 2 C 25 DG DG DA DA DT DG DT DC DG DG DT DT SEQRES 1 D 28 DA DA DC DC DG DA DC DA DT DT DC DC DC SEQRES 2 D 28 DT DA DC DT DT DG DT DA DC DA DC DC DT SEQRES 3 D 28 DG DG SEQRES 1 E 25 DG DG DT DG DT DA DC DA DA DG DT DA DG SEQRES 2 E 25 DG DG DA DA DT DG DT DC DG DG DT DT SEQRES 1 F 28 DA DA DC DC DG DA DC DA DT DT DC DC DC SEQRES 2 F 28 DT DA DC DT DT DG DT DA DC DA DC DC DT SEQRES 3 F 28 DG DG SEQRES 1 G 25 DG DG DT DG DT DA DC DA DA DG DT DA DG SEQRES 2 G 25 DG DG DA DA DT DG DT DC DG DG DT DT SEQRES 1 H 27 DA DA DC DC DG DA DC DA DT DT DC DC DC SEQRES 2 H 27 DT DA DC DT DT DG DT DA DC DA DC DC DT SEQRES 3 H 27 DG SEQRES 1 A 345 MET SER SER PHE VAL PRO ASN LYS GLU GLN THR ARG THR SEQRES 2 A 345 VAL LEU ILE PHE CYS PHE HIS LEU LYS LYS THR ALA ALA SEQRES 3 A 345 GLU SER HIS ARG MET LEU VAL GLU ALA PHE GLY GLU GLN SEQRES 4 A 345 VAL PRO THR VAL LYS THR CYS GLU ARG TRP PHE GLN ARG SEQRES 5 A 345 PHE LYS SER GLY ASP PHE ASP VAL ASP ASP LYS GLU HIS SEQRES 6 A 345 GLY LYS PRO PRO LYS ARG TYR GLU ASP ALA GLU LEU GLN SEQRES 7 A 345 ALA LEU LEU ASP GLU ASP ASP ALA GLN THR GLN LYS GLN SEQRES 8 A 345 LEU ALA GLU GLN LEU GLU VAL SER GLN GLN ALA VAL SER SEQRES 9 A 345 ASN ARG LEU ARG GLU MET GLY LYS ILE GLN LYS VAL GLY SEQRES 10 A 345 ARG TRP VAL PRO HIS GLU LEU ASN GLU ARG GLN MET GLU SEQRES 11 A 345 ARG ARG LYS ASN THR CYS GLU ILE LEU LEU SER ARG TYR SEQRES 12 A 345 LYS ARG LYS SER PHE LEU HIS ARG ILE VAL THR GLY ASP SEQRES 13 A 345 GLU LYS TRP ILE PHE PHE VAL ASN PRO LYS ARG LYS LYS SEQRES 14 A 345 SER TYR VAL ASP PRO GLY GLN PRO ALA THR SER THR ALA SEQRES 15 A 345 ARG PRO ASN ARG PHE GLY LYS LYS THR MET LEU CYS VAL SEQRES 16 A 345 TRP TRP ASP GLN SER GLY VAL ILE TYR TYR GLU LEU LEU SEQRES 17 A 345 LYS PRO GLY GLU THR VAL ASN ALA ALA ARG TYR GLN GLN SEQRES 18 A 345 GLN LEU ILE ASN LEU ASN ARG ALA LEU GLN ARG LYS ARG SEQRES 19 A 345 PRO GLU TYR GLN LYS ARG GLN HIS ARG VAL ILE PHE LEU SEQRES 20 A 345 HIS ASP ASN ALA PRO SER HIS THR ALA ARG ALA VAL ARG SEQRES 21 A 345 ASP THR LEU GLU THR LEU ASN TRP GLU VAL LEU PRO HIS SEQRES 22 A 345 ALA ALA TYR SER PRO ASP LEU ALA PRO SER ASP TYR HIS SEQRES 23 A 345 LEU PHE ALA SER MET GLY HIS ALA LEU ALA GLU GLN ARG SEQRES 24 A 345 PHE ASP SER TYR GLU SER VAL LYS LYS TRP LEU ASP GLU SEQRES 25 A 345 TRP PHE ALA ALA LYS ASP ASP GLU PHE TYR TRP ARG GLY SEQRES 26 A 345 ILE HIS LYS LEU PRO GLU ARG TRP GLU LYS CYS VAL ALA SEQRES 27 A 345 SER ASP GLY LYS TYR PHE GLU SEQRES 1 B 345 MET SER SER PHE VAL PRO ASN LYS GLU GLN THR ARG THR SEQRES 2 B 345 VAL LEU ILE PHE CYS PHE HIS LEU LYS LYS THR ALA ALA SEQRES 3 B 345 GLU SER HIS ARG MET LEU VAL GLU ALA PHE GLY GLU GLN SEQRES 4 B 345 VAL PRO THR VAL LYS THR CYS GLU ARG TRP PHE GLN ARG SEQRES 5 B 345 PHE LYS SER GLY ASP PHE ASP VAL ASP ASP LYS GLU HIS SEQRES 6 B 345 GLY LYS PRO PRO LYS ARG TYR GLU ASP ALA GLU LEU GLN SEQRES 7 B 345 ALA LEU LEU ASP GLU ASP ASP ALA GLN THR GLN LYS GLN SEQRES 8 B 345 LEU ALA GLU GLN LEU GLU VAL SER GLN GLN ALA VAL SER SEQRES 9 B 345 ASN ARG LEU ARG GLU MET GLY LYS ILE GLN LYS VAL GLY SEQRES 10 B 345 ARG TRP VAL PRO HIS GLU LEU ASN GLU ARG GLN MET GLU SEQRES 11 B 345 ARG ARG LYS ASN THR CYS GLU ILE LEU LEU SER ARG TYR SEQRES 12 B 345 LYS ARG LYS SER PHE LEU HIS ARG ILE VAL THR GLY ASP SEQRES 13 B 345 GLU LYS TRP ILE PHE PHE VAL ASN PRO LYS ARG LYS LYS SEQRES 14 B 345 SER TYR VAL ASP PRO GLY GLN PRO ALA THR SER THR ALA SEQRES 15 B 345 ARG PRO ASN ARG PHE GLY LYS LYS THR MET LEU CYS VAL SEQRES 16 B 345 TRP TRP ASP GLN SER GLY VAL ILE TYR TYR GLU LEU LEU SEQRES 17 B 345 LYS PRO GLY GLU THR VAL ASN ALA ALA ARG TYR GLN GLN SEQRES 18 B 345 GLN LEU ILE ASN LEU ASN ARG ALA LEU GLN ARG LYS ARG SEQRES 19 B 345 PRO GLU TYR GLN LYS ARG GLN HIS ARG VAL ILE PHE LEU SEQRES 20 B 345 HIS ASP ASN ALA PRO SER HIS THR ALA ARG ALA VAL ARG SEQRES 21 B 345 ASP THR LEU GLU THR LEU ASN TRP GLU VAL LEU PRO HIS SEQRES 22 B 345 ALA ALA TYR SER PRO ASP LEU ALA PRO SER ASP TYR HIS SEQRES 23 B 345 LEU PHE ALA SER MET GLY HIS ALA LEU ALA GLU GLN ARG SEQRES 24 B 345 PHE ASP SER TYR GLU SER VAL LYS LYS TRP LEU ASP GLU SEQRES 25 B 345 TRP PHE ALA ALA LYS ASP ASP GLU PHE TYR TRP ARG GLY SEQRES 26 B 345 ILE HIS LYS LEU PRO GLU ARG TRP GLU LYS CYS VAL ALA SEQRES 27 B 345 SER ASP GLY LYS TYR PHE GLU HET SO4 D 101 5 HET MN H 101 1 HET MN A 401 1 HET SO4 B 401 5 HETNAM SO4 SULFATE ION HETNAM MN MANGANESE (II) ION FORMUL 9 SO4 2(O4 S 2-) FORMUL 10 MN 2(MN 2+) FORMUL 13 HOH *5(H2 O) HELIX 1 1 ASN A 7 CYS A 18 1 12 HELIX 2 2 PHE A 19 LYS A 22 5 4 HELIX 3 3 THR A 24 GLY A 37 1 14 HELIX 4 4 THR A 42 LYS A 54 1 13 HELIX 5 5 GLU A 73 ASP A 82 1 10 HELIX 6 6 THR A 88 GLU A 94 1 7 HELIX 7 7 SER A 99 MET A 110 1 12 HELIX 8 8 ASN A 125 LYS A 146 1 22 HELIX 9 9 PHE A 148 HIS A 150 5 3 HELIX 10 10 ASN A 215 ARG A 234 1 20 HELIX 11 11 ALA A 256 THR A 265 1 10 HELIX 12 12 SER A 277 LEU A 280 5 4 HELIX 13 13 ALA A 281 HIS A 286 1 6 HELIX 14 14 HIS A 286 LEU A 295 1 10 HELIX 15 15 SER A 302 ALA A 316 1 15 HELIX 16 16 ASP A 319 SER A 339 1 21 HELIX 17 17 GLU B 9 HIS B 20 1 12 HELIX 18 18 THR B 24 PHE B 36 1 13 HELIX 19 19 THR B 42 LYS B 54 1 13 HELIX 20 20 GLU B 73 ASP B 85 1 13 HELIX 21 21 THR B 88 GLU B 97 1 10 HELIX 22 22 SER B 99 MET B 110 1 12 HELIX 23 23 ASN B 125 LYS B 146 1 22 HELIX 24 24 PHE B 148 HIS B 150 5 3 HELIX 25 25 ASN B 215 ARG B 234 1 20 HELIX 26 26 ALA B 251 THR B 255 5 5 HELIX 27 27 ALA B 256 THR B 265 1 10 HELIX 28 28 SER B 277 LEU B 280 5 4 HELIX 29 29 ALA B 281 HIS B 286 1 6 HELIX 30 30 HIS B 286 ALA B 296 1 11 HELIX 31 31 SER B 302 LYS B 317 1 16 HELIX 32 32 ASP B 318 LYS B 328 1 11 HELIX 33 33 LYS B 328 SER B 339 1 12 SHEET 1 A 2 ILE A 113 VAL A 116 0 SHEET 2 A 2 LYS B 169 VAL B 172 -1 O VAL B 172 N ILE A 113 SHEET 1 B 2 TRP A 119 VAL A 120 0 SHEET 2 B 2 THR B 181 ALA B 182 1 O THR B 181 N VAL A 120 SHEET 1 C 5 GLY A 201 LEU A 207 0 SHEET 2 C 5 LYS A 190 ASP A 198 -1 N ASP A 198 O GLY A 201 SHEET 3 C 5 ILE A 152 PHE A 161 -1 N THR A 154 O TRP A 197 SHEET 4 C 5 VAL A 244 LEU A 247 1 O ILE A 245 N VAL A 153 SHEET 5 C 5 TRP A 268 VAL A 270 1 O GLU A 269 N PHE A 246 SHEET 1 D 2 LYS A 169 VAL A 172 0 SHEET 2 D 2 ILE B 113 VAL B 116 -1 O LYS B 115 N SER A 170 SHEET 1 E 2 THR A 181 ALA A 182 0 SHEET 2 E 2 TRP B 119 VAL B 120 1 O VAL B 120 N THR A 181 SHEET 1 F 5 GLY B 201 LEU B 207 0 SHEET 2 F 5 LYS B 190 ASP B 198 -1 N CYS B 194 O GLU B 206 SHEET 3 F 5 ILE B 152 PHE B 161 -1 N THR B 154 O TRP B 197 SHEET 4 F 5 ILE B 245 LEU B 247 1 O ILE B 245 N VAL B 153 SHEET 5 F 5 GLU B 269 VAL B 270 1 O GLU B 269 N PHE B 246 SSBOND 1 CYS A 136 CYS A 336 1555 1555 2.06 SSBOND 2 CYS B 136 CYS B 336 1555 1555 2.07 LINK O3' DC H 53 MN MN H 101 1555 1555 2.48 LINK MN MN H 101 OD1 ASP B 156 1555 1555 2.60 LINK MN MN H 101 OD2 ASP B 249 1555 1555 1.95 LINK OD2 ASP A 156 MN MN A 401 1555 1555 2.24 LINK OD2 ASP A 249 MN MN A 401 1555 1555 2.33 SITE 1 AC1 2 ARG A 71 DT D 45 SITE 1 AC2 4 ASP B 156 ASP B 249 DC H 53 DT H 54 SITE 1 AC3 2 ASP A 156 ASP A 249 SITE 1 AC4 2 ARG B 71 DT F 45 CRYST1 119.783 86.885 132.379 90.00 99.03 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008348 0.000000 0.001327 0.00000 SCALE2 0.000000 0.011509 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007649 0.00000