PDB Short entry for 4RE1 HEADER TRANSCRIPTION/PROTEIN BINDING 21-SEP-14 4RE1 TITLE CRYSTAL STRUCTURE OF HUMAN TEAD1 AND DISULFIDE-ENGINEERED YAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL ENHANCER FACTOR TEF-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: YAP BINDING DOMAIN (UNP RESIDUES 209-426); COMPND 5 SYNONYM: NTEF-1, PROTEIN GT-IIC, TEA DOMAIN FAMILY MEMBER 1, TEAD-1, COMPND 6 TRANSCRIPTION FACTOR 13, TCF-13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: YORKIE HOMOLOG; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: TEAD BINDING DOMAIN (UNP RESIDUES 50-171); COMPND 12 SYNONYM: 65 KDA YES-ASSOCIATED PROTEIN, YAP65; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TEAD1, TCF13, TEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: YAP1, YAP65; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGLOBULIN-LIKE FOLD, TRANSCRIPTION REGULATION, DNA-BINDING, KEYWDS 2 PROTEIN-PROTEIN INTERACTION, PHOSPHOPROTEIN, NUCLEUS, TRANSCRIPTION- KEYWDS 3 PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.XU,Z.ZHOU REVDAT 3 08-NOV-23 4RE1 1 REMARK SEQADV REVDAT 2 02-SEP-15 4RE1 1 JRNL REVDAT 1 19-NOV-14 4RE1 0 JRNL AUTH Z.ZHOU,T.HU,Z.XU,Z.LIN,Z.ZHANG,T.FENG,L.ZHU,Y.RONG,H.SHEN, JRNL AUTH 2 J.M.LUK,X.ZHANG,N.QIN JRNL TITL TARGETING HIPPO PATHWAY BY SPECIFIC INTERRUPTION OF YAP-TEAD JRNL TITL 2 INTERACTION USING CYCLIC YAP-LIKE PEPTIDES. JRNL REF FASEB J. V. 29 724 2015 JRNL REFN ISSN 0892-6638 JRNL PMID 25384421 JRNL DOI 10.1096/FJ.14-262980 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.3_1479) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 38275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5719 - 5.2894 0.91 2668 133 0.2013 0.2174 REMARK 3 2 5.2894 - 4.2037 0.94 2625 139 0.1553 0.1725 REMARK 3 3 4.2037 - 3.6739 0.96 2597 151 0.1817 0.2155 REMARK 3 4 3.6739 - 3.3387 0.96 2601 155 0.2049 0.2476 REMARK 3 5 3.3387 - 3.0998 0.96 2600 136 0.2366 0.3089 REMARK 3 6 3.0998 - 2.9173 0.96 2576 128 0.2495 0.3127 REMARK 3 7 2.9173 - 2.7713 0.96 2585 147 0.2509 0.2819 REMARK 3 8 2.7713 - 2.6508 0.96 2600 125 0.2535 0.3208 REMARK 3 9 2.6508 - 2.5488 0.96 2591 134 0.2472 0.2647 REMARK 3 10 2.5488 - 2.4609 0.97 2554 126 0.2508 0.3176 REMARK 3 11 2.4609 - 2.3840 0.97 2608 136 0.2678 0.3349 REMARK 3 12 2.3840 - 2.3159 0.97 2595 129 0.2670 0.3176 REMARK 3 13 2.3159 - 2.2550 0.97 2596 131 0.2890 0.3515 REMARK 3 14 2.2550 - 2.2000 0.97 2574 135 0.3110 0.3599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4052 REMARK 3 ANGLE : 1.114 5498 REMARK 3 CHIRALITY : 0.046 622 REMARK 3 PLANARITY : 0.006 712 REMARK 3 DIHEDRAL : 14.412 1441 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38411 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 26.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3KYS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 1.8M SODIUM REMARK 280 FORMATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.12500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.12500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 192 REMARK 465 ALA A 193 REMARK 465 ALA A 230 REMARK 465 ASN A 231 REMARK 465 HIS A 232 REMARK 465 SER A 233 REMARK 465 TYR A 234 REMARK 465 SER A 235 REMARK 465 ASP A 236 REMARK 465 ILE A 283 REMARK 465 GLN A 284 REMARK 465 ASP A 285 REMARK 465 ASP A 286 REMARK 465 ALA A 287 REMARK 465 MET B 192 REMARK 465 ALA B 193 REMARK 465 HIS B 229 REMARK 465 ALA B 230 REMARK 465 ASN B 231 REMARK 465 HIS B 232 REMARK 465 SER B 233 REMARK 465 TYR B 234 REMARK 465 SER B 235 REMARK 465 ASP B 236 REMARK 465 PRO B 237 REMARK 465 ILE B 283 REMARK 465 GLN B 284 REMARK 465 ASP B 285 REMARK 465 ASP B 286 REMARK 465 ALA B 287 REMARK 465 GLU B 398 REMARK 465 HIS B 399 REMARK 465 MET C 23 REMARK 465 GLY C 24 REMARK 465 SER C 25 REMARK 465 SER C 26 REMARK 465 HIS C 27 REMARK 465 HIS C 28 REMARK 465 HIS C 29 REMARK 465 HIS C 30 REMARK 465 HIS C 31 REMARK 465 HIS C 32 REMARK 465 HIS C 33 REMARK 465 HIS C 34 REMARK 465 HIS C 35 REMARK 465 HIS C 36 REMARK 465 SER C 37 REMARK 465 SER C 38 REMARK 465 GLY C 39 REMARK 465 ARG C 40 REMARK 465 GLU C 41 REMARK 465 ASN C 42 REMARK 465 LEU C 43 REMARK 465 TYR C 44 REMARK 465 PHE C 45 REMARK 465 GLN C 46 REMARK 465 SER C 47 REMARK 465 HIS C 48 REMARK 465 MET C 49 REMARK 465 ARG C 100 REMARK 465 PRO C 101 REMARK 465 LYS C 102 REMARK 465 SER C 103 REMARK 465 HIS C 104 REMARK 465 SER C 105 REMARK 465 ARG C 106 REMARK 465 GLN C 107 REMARK 465 ALA C 108 REMARK 465 SER C 109 REMARK 465 THR C 110 REMARK 465 ASP C 111 REMARK 465 ALA C 112 REMARK 465 GLY C 113 REMARK 465 THR C 114 REMARK 465 ALA C 115 REMARK 465 GLY C 116 REMARK 465 ALA C 117 REMARK 465 LEU C 118 REMARK 465 THR C 119 REMARK 465 PRO C 120 REMARK 465 GLN C 121 REMARK 465 HIS C 122 REMARK 465 VAL C 123 REMARK 465 ARG C 124 REMARK 465 ALA C 125 REMARK 465 HIS C 126 REMARK 465 SER C 127 REMARK 465 SER C 128 REMARK 465 PRO C 129 REMARK 465 ALA C 130 REMARK 465 SER C 131 REMARK 465 LEU C 132 REMARK 465 GLN C 133 REMARK 465 LEU C 134 REMARK 465 GLY C 135 REMARK 465 ALA C 136 REMARK 465 VAL C 137 REMARK 465 SER C 138 REMARK 465 PRO C 139 REMARK 465 GLY C 140 REMARK 465 THR C 141 REMARK 465 LEU C 142 REMARK 465 THR C 143 REMARK 465 PRO C 144 REMARK 465 THR C 145 REMARK 465 GLY C 146 REMARK 465 VAL C 147 REMARK 465 VAL C 148 REMARK 465 SER C 149 REMARK 465 GLY C 150 REMARK 465 PRO C 151 REMARK 465 ALA C 152 REMARK 465 ALA C 153 REMARK 465 THR C 154 REMARK 465 PRO C 155 REMARK 465 THR C 156 REMARK 465 ALA C 157 REMARK 465 GLN C 158 REMARK 465 HIS C 159 REMARK 465 LEU C 160 REMARK 465 ARG C 161 REMARK 465 GLN C 162 REMARK 465 SER C 163 REMARK 465 SER C 164 REMARK 465 PHE C 165 REMARK 465 GLU C 166 REMARK 465 ILE C 167 REMARK 465 PRO C 168 REMARK 465 ASP C 169 REMARK 465 ASP C 170 REMARK 465 VAL C 171 REMARK 465 MET D 23 REMARK 465 GLY D 24 REMARK 465 SER D 25 REMARK 465 SER D 26 REMARK 465 HIS D 27 REMARK 465 HIS D 28 REMARK 465 HIS D 29 REMARK 465 HIS D 30 REMARK 465 HIS D 31 REMARK 465 HIS D 32 REMARK 465 HIS D 33 REMARK 465 HIS D 34 REMARK 465 HIS D 35 REMARK 465 HIS D 36 REMARK 465 SER D 37 REMARK 465 SER D 38 REMARK 465 GLY D 39 REMARK 465 ARG D 40 REMARK 465 GLU D 41 REMARK 465 ASN D 42 REMARK 465 LEU D 43 REMARK 465 TYR D 44 REMARK 465 PHE D 45 REMARK 465 GLN D 46 REMARK 465 SER D 47 REMARK 465 HIS D 48 REMARK 465 MET D 49 REMARK 465 ALA D 50 REMARK 465 GLY D 51 REMARK 465 HIS D 52 REMARK 465 ARG D 100 REMARK 465 PRO D 101 REMARK 465 LYS D 102 REMARK 465 SER D 103 REMARK 465 HIS D 104 REMARK 465 SER D 105 REMARK 465 ARG D 106 REMARK 465 GLN D 107 REMARK 465 ALA D 108 REMARK 465 SER D 109 REMARK 465 THR D 110 REMARK 465 ASP D 111 REMARK 465 ALA D 112 REMARK 465 GLY D 113 REMARK 465 THR D 114 REMARK 465 ALA D 115 REMARK 465 GLY D 116 REMARK 465 ALA D 117 REMARK 465 LEU D 118 REMARK 465 THR D 119 REMARK 465 PRO D 120 REMARK 465 GLN D 121 REMARK 465 HIS D 122 REMARK 465 VAL D 123 REMARK 465 ARG D 124 REMARK 465 ALA D 125 REMARK 465 HIS D 126 REMARK 465 SER D 127 REMARK 465 SER D 128 REMARK 465 PRO D 129 REMARK 465 ALA D 130 REMARK 465 SER D 131 REMARK 465 LEU D 132 REMARK 465 GLN D 133 REMARK 465 LEU D 134 REMARK 465 GLY D 135 REMARK 465 ALA D 136 REMARK 465 VAL D 137 REMARK 465 SER D 138 REMARK 465 PRO D 139 REMARK 465 GLY D 140 REMARK 465 THR D 141 REMARK 465 LEU D 142 REMARK 465 THR D 143 REMARK 465 PRO D 144 REMARK 465 THR D 145 REMARK 465 GLY D 146 REMARK 465 VAL D 147 REMARK 465 VAL D 148 REMARK 465 SER D 149 REMARK 465 GLY D 150 REMARK 465 PRO D 151 REMARK 465 ALA D 152 REMARK 465 ALA D 153 REMARK 465 THR D 154 REMARK 465 PRO D 155 REMARK 465 THR D 156 REMARK 465 ALA D 157 REMARK 465 GLN D 158 REMARK 465 HIS D 159 REMARK 465 LEU D 160 REMARK 465 ARG D 161 REMARK 465 GLN D 162 REMARK 465 SER D 163 REMARK 465 SER D 164 REMARK 465 PHE D 165 REMARK 465 GLU D 166 REMARK 465 ILE D 167 REMARK 465 PRO D 168 REMARK 465 ASP D 169 REMARK 465 ASP D 170 REMARK 465 VAL D 171 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 238 CG CD1 CD2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 ASN A 282 CG OD1 ND2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 LYS A 321 CG CD CE NZ REMARK 470 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 356 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 ASN A 396 CG OD1 ND2 REMARK 470 GLU A 398 CG CD OE1 OE2 REMARK 470 HIS A 399 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 ARG B 214 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 238 CG CD1 CD2 REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 ASN B 282 CG OD1 ND2 REMARK 470 LYS B 316 CG CD CE NZ REMARK 470 LYS B 321 CG CD CE NZ REMARK 470 ARG B 328 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 345 CG CD OE1 OE2 REMARK 470 LYS B 353 CG CD CE NZ REMARK 470 HIS B 356 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 359 CG CD OE1 OE2 REMARK 470 LYS B 360 CG CD CE NZ REMARK 470 LYS B 410 CG CD CE NZ REMARK 470 GLN C 53 CG CD OE1 NE2 REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 GLU C 66 CG CD OE1 OE2 REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 ASN C 79 CG OD1 ND2 REMARK 470 LYS C 97 CG CD CE NZ REMARK 470 GLN D 53 CG CD OE1 NE2 REMARK 470 GLU D 62 CG CD OE1 OE2 REMARK 470 GLU D 66 CG CD OE1 OE2 REMARK 470 LYS D 76 CG CD CE NZ REMARK 470 ASN D 79 CG OD1 ND2 REMARK 470 LYS D 97 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 542 O HOH B 550 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 254 -149.27 -83.13 REMARK 500 GLN A 382 12.31 59.08 REMARK 500 LYS B 254 -155.85 -81.93 REMARK 500 GLN B 382 12.08 59.46 REMARK 500 ASP D 60 45.53 -94.72 REMARK 500 ASN D 79 78.70 -101.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 DBREF 4RE1 A 194 411 UNP P28347 TEAD1_HUMAN 209 426 DBREF 4RE1 B 194 411 UNP P28347 TEAD1_HUMAN 209 426 DBREF 4RE1 C 50 171 UNP P46937 YAP1_HUMAN 50 171 DBREF 4RE1 D 50 171 UNP P46937 YAP1_HUMAN 50 171 SEQADV 4RE1 MET A 192 UNP P28347 EXPRESSION TAG SEQADV 4RE1 ALA A 193 UNP P28347 EXPRESSION TAG SEQADV 4RE1 MET B 192 UNP P28347 EXPRESSION TAG SEQADV 4RE1 ALA B 193 UNP P28347 EXPRESSION TAG SEQADV 4RE1 MET C 23 UNP P46937 EXPRESSION TAG SEQADV 4RE1 GLY C 24 UNP P46937 EXPRESSION TAG SEQADV 4RE1 SER C 25 UNP P46937 EXPRESSION TAG SEQADV 4RE1 SER C 26 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 27 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 28 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 29 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 30 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 31 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 32 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 33 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 34 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 35 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 36 UNP P46937 EXPRESSION TAG SEQADV 4RE1 SER C 37 UNP P46937 EXPRESSION TAG SEQADV 4RE1 SER C 38 UNP P46937 EXPRESSION TAG SEQADV 4RE1 GLY C 39 UNP P46937 EXPRESSION TAG SEQADV 4RE1 ARG C 40 UNP P46937 EXPRESSION TAG SEQADV 4RE1 GLU C 41 UNP P46937 EXPRESSION TAG SEQADV 4RE1 ASN C 42 UNP P46937 EXPRESSION TAG SEQADV 4RE1 LEU C 43 UNP P46937 EXPRESSION TAG SEQADV 4RE1 TYR C 44 UNP P46937 EXPRESSION TAG SEQADV 4RE1 PHE C 45 UNP P46937 EXPRESSION TAG SEQADV 4RE1 GLN C 46 UNP P46937 EXPRESSION TAG SEQADV 4RE1 SER C 47 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS C 48 UNP P46937 EXPRESSION TAG SEQADV 4RE1 MET C 49 UNP P46937 EXPRESSION TAG SEQADV 4RE1 CYS C 87 UNP P46937 ARG 87 ENGINEERED MUTATION SEQADV 4RE1 ALA C 93 UNP P46937 ASP 93 ENGINEERED MUTATION SEQADV 4RE1 CYS C 96 UNP P46937 PHE 96 ENGINEERED MUTATION SEQADV 4RE1 ARG C 100 UNP P46937 GLU 100 ENGINEERED MUTATION SEQADV 4RE1 MET D 23 UNP P46937 EXPRESSION TAG SEQADV 4RE1 GLY D 24 UNP P46937 EXPRESSION TAG SEQADV 4RE1 SER D 25 UNP P46937 EXPRESSION TAG SEQADV 4RE1 SER D 26 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 27 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 28 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 29 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 30 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 31 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 32 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 33 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 34 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 35 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 36 UNP P46937 EXPRESSION TAG SEQADV 4RE1 SER D 37 UNP P46937 EXPRESSION TAG SEQADV 4RE1 SER D 38 UNP P46937 EXPRESSION TAG SEQADV 4RE1 GLY D 39 UNP P46937 EXPRESSION TAG SEQADV 4RE1 ARG D 40 UNP P46937 EXPRESSION TAG SEQADV 4RE1 GLU D 41 UNP P46937 EXPRESSION TAG SEQADV 4RE1 ASN D 42 UNP P46937 EXPRESSION TAG SEQADV 4RE1 LEU D 43 UNP P46937 EXPRESSION TAG SEQADV 4RE1 TYR D 44 UNP P46937 EXPRESSION TAG SEQADV 4RE1 PHE D 45 UNP P46937 EXPRESSION TAG SEQADV 4RE1 GLN D 46 UNP P46937 EXPRESSION TAG SEQADV 4RE1 SER D 47 UNP P46937 EXPRESSION TAG SEQADV 4RE1 HIS D 48 UNP P46937 EXPRESSION TAG SEQADV 4RE1 MET D 49 UNP P46937 EXPRESSION TAG SEQADV 4RE1 CYS D 87 UNP P46937 ARG 87 ENGINEERED MUTATION SEQADV 4RE1 ALA D 93 UNP P46937 ASP 93 ENGINEERED MUTATION SEQADV 4RE1 CYS D 96 UNP P46937 PHE 96 ENGINEERED MUTATION SEQADV 4RE1 ARG D 100 UNP P46937 GLU 100 ENGINEERED MUTATION SEQRES 1 A 220 MET ALA ARG SER ILE GLY THR THR LYS LEU ARG LEU VAL SEQRES 2 A 220 GLU PHE SER ALA PHE LEU GLU GLN GLN ARG ASP PRO ASP SEQRES 3 A 220 SER TYR ASN LYS HIS LEU PHE VAL HIS ILE GLY HIS ALA SEQRES 4 A 220 ASN HIS SER TYR SER ASP PRO LEU LEU GLU SER VAL ASP SEQRES 5 A 220 ILE ARG GLN ILE TYR ASP LYS PHE PRO GLU LYS LYS GLY SEQRES 6 A 220 GLY LEU LYS GLU LEU PHE GLY LYS GLY PRO GLN ASN ALA SEQRES 7 A 220 PHE PHE LEU VAL LYS PHE TRP ALA ASP LEU ASN CYS ASN SEQRES 8 A 220 ILE GLN ASP ASP ALA GLY ALA PHE TYR GLY VAL THR SER SEQRES 9 A 220 GLN TYR GLU SER SER GLU ASN MET THR VAL THR CYS SER SEQRES 10 A 220 THR LYS VAL CYS SER PHE GLY LYS GLN VAL VAL GLU LYS SEQRES 11 A 220 VAL GLU THR GLU TYR ALA ARG PHE GLU ASN GLY ARG PHE SEQRES 12 A 220 VAL TYR ARG ILE ASN ARG SER PRO MET CYS GLU TYR MET SEQRES 13 A 220 ILE ASN PHE ILE HIS LYS LEU LYS HIS LEU PRO GLU LYS SEQRES 14 A 220 TYR MET MET ASN SER VAL LEU GLU ASN PHE THR ILE LEU SEQRES 15 A 220 LEU VAL VAL THR ASN ARG ASP THR GLN GLU THR LEU LEU SEQRES 16 A 220 CYS MET ALA CYS VAL PHE GLU VAL SER ASN SER GLU HIS SEQRES 17 A 220 GLY ALA GLN HIS HIS ILE TYR ARG LEU VAL LYS ASP SEQRES 1 B 220 MET ALA ARG SER ILE GLY THR THR LYS LEU ARG LEU VAL SEQRES 2 B 220 GLU PHE SER ALA PHE LEU GLU GLN GLN ARG ASP PRO ASP SEQRES 3 B 220 SER TYR ASN LYS HIS LEU PHE VAL HIS ILE GLY HIS ALA SEQRES 4 B 220 ASN HIS SER TYR SER ASP PRO LEU LEU GLU SER VAL ASP SEQRES 5 B 220 ILE ARG GLN ILE TYR ASP LYS PHE PRO GLU LYS LYS GLY SEQRES 6 B 220 GLY LEU LYS GLU LEU PHE GLY LYS GLY PRO GLN ASN ALA SEQRES 7 B 220 PHE PHE LEU VAL LYS PHE TRP ALA ASP LEU ASN CYS ASN SEQRES 8 B 220 ILE GLN ASP ASP ALA GLY ALA PHE TYR GLY VAL THR SER SEQRES 9 B 220 GLN TYR GLU SER SER GLU ASN MET THR VAL THR CYS SER SEQRES 10 B 220 THR LYS VAL CYS SER PHE GLY LYS GLN VAL VAL GLU LYS SEQRES 11 B 220 VAL GLU THR GLU TYR ALA ARG PHE GLU ASN GLY ARG PHE SEQRES 12 B 220 VAL TYR ARG ILE ASN ARG SER PRO MET CYS GLU TYR MET SEQRES 13 B 220 ILE ASN PHE ILE HIS LYS LEU LYS HIS LEU PRO GLU LYS SEQRES 14 B 220 TYR MET MET ASN SER VAL LEU GLU ASN PHE THR ILE LEU SEQRES 15 B 220 LEU VAL VAL THR ASN ARG ASP THR GLN GLU THR LEU LEU SEQRES 16 B 220 CYS MET ALA CYS VAL PHE GLU VAL SER ASN SER GLU HIS SEQRES 17 B 220 GLY ALA GLN HIS HIS ILE TYR ARG LEU VAL LYS ASP SEQRES 1 C 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 2 C 149 HIS SER SER GLY ARG GLU ASN LEU TYR PHE GLN SER HIS SEQRES 3 C 149 MET ALA GLY HIS GLN ILE VAL HIS VAL ARG GLY ASP SER SEQRES 4 C 149 GLU THR ASP LEU GLU ALA LEU PHE ASN ALA VAL MET ASN SEQRES 5 C 149 PRO LYS THR ALA ASN VAL PRO GLN THR VAL PRO MET CYS SEQRES 6 C 149 LEU ARG LYS LEU PRO ALA SER PHE CYS LYS PRO PRO ARG SEQRES 7 C 149 PRO LYS SER HIS SER ARG GLN ALA SER THR ASP ALA GLY SEQRES 8 C 149 THR ALA GLY ALA LEU THR PRO GLN HIS VAL ARG ALA HIS SEQRES 9 C 149 SER SER PRO ALA SER LEU GLN LEU GLY ALA VAL SER PRO SEQRES 10 C 149 GLY THR LEU THR PRO THR GLY VAL VAL SER GLY PRO ALA SEQRES 11 C 149 ALA THR PRO THR ALA GLN HIS LEU ARG GLN SER SER PHE SEQRES 12 C 149 GLU ILE PRO ASP ASP VAL SEQRES 1 D 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 2 D 149 HIS SER SER GLY ARG GLU ASN LEU TYR PHE GLN SER HIS SEQRES 3 D 149 MET ALA GLY HIS GLN ILE VAL HIS VAL ARG GLY ASP SER SEQRES 4 D 149 GLU THR ASP LEU GLU ALA LEU PHE ASN ALA VAL MET ASN SEQRES 5 D 149 PRO LYS THR ALA ASN VAL PRO GLN THR VAL PRO MET CYS SEQRES 6 D 149 LEU ARG LYS LEU PRO ALA SER PHE CYS LYS PRO PRO ARG SEQRES 7 D 149 PRO LYS SER HIS SER ARG GLN ALA SER THR ASP ALA GLY SEQRES 8 D 149 THR ALA GLY ALA LEU THR PRO GLN HIS VAL ARG ALA HIS SEQRES 9 D 149 SER SER PRO ALA SER LEU GLN LEU GLY ALA VAL SER PRO SEQRES 10 D 149 GLY THR LEU THR PRO THR GLY VAL VAL SER GLY PRO ALA SEQRES 11 D 149 ALA THR PRO THR ALA GLN HIS LEU ARG GLN SER SER PHE SEQRES 12 D 149 GLU ILE PRO ASP ASP VAL HET CL A 501 1 HETNAM CL CHLORIDE ION FORMUL 5 CL CL 1- FORMUL 6 HOH *95(H2 O) HELIX 1 1 ARG A 245 PHE A 251 5 7 HELIX 2 2 GLY A 257 GLY A 265 1 9 HELIX 3 3 PRO A 266 ASN A 268 5 3 HELIX 4 4 CYS A 344 HIS A 356 1 13 HELIX 5 5 GLU A 359 GLU A 368 1 10 HELIX 6 6 ARG B 245 PHE B 251 5 7 HELIX 7 7 GLY B 257 GLY B 265 1 9 HELIX 8 8 PRO B 266 ASN B 268 5 3 HELIX 9 9 CYS B 344 HIS B 356 1 13 HELIX 10 10 GLU B 359 GLU B 368 1 10 HELIX 11 11 ASP C 60 ASN C 74 1 15 HELIX 12 12 PRO C 85 ARG C 89 5 5 HELIX 13 13 PRO C 92 LYS C 97 5 6 HELIX 14 14 ASP D 60 ASN D 74 1 15 HELIX 15 15 PRO D 85 ARG D 89 5 5 HELIX 16 16 PRO D 92 LYS D 97 5 6 SHEET 1 A 5 SER A 218 ILE A 227 0 SHEET 2 A 5 ARG A 202 ASP A 215 -1 N PHE A 206 O ILE A 227 SHEET 3 A 5 ALA A 289 SER A 299 -1 O PHE A 290 N GLU A 211 SHEET 4 A 5 ARG A 333 PRO A 342 -1 O TYR A 336 N TYR A 297 SHEET 5 A 5 ARG A 328 GLU A 330 -1 N ARG A 328 O VAL A 335 SHEET 1 B 8 SER A 241 ASP A 243 0 SHEET 2 B 8 GLN A 402 VAL A 409 1 O ARG A 407 N VAL A 242 SHEET 3 B 8 PHE A 270 ALA A 277 -1 N LEU A 272 O TYR A 406 SHEET 4 B 8 THR A 384 VAL A 394 1 O ALA A 389 N PHE A 271 SHEET 5 B 8 PHE A 370 ASN A 378 -1 N VAL A 376 O LEU A 386 SHEET 6 B 8 THR A 304 SER A 313 -1 N CYS A 312 O THR A 371 SHEET 7 B 8 LYS A 316 TYR A 326 -1 O GLU A 323 N CYS A 307 SHEET 8 B 8 ILE D 54 VAL D 57 -1 O ILE D 54 N VAL A 322 SHEET 1 C 5 SER B 218 ILE B 227 0 SHEET 2 C 5 ARG B 202 ASP B 215 -1 N PHE B 206 O ILE B 227 SHEET 3 C 5 ALA B 289 SER B 299 -1 O GLN B 296 N VAL B 204 SHEET 4 C 5 ARG B 333 PRO B 342 -1 O ILE B 338 N SER B 295 SHEET 5 C 5 ARG B 328 GLU B 330 -1 N ARG B 328 O VAL B 335 SHEET 1 D 8 GLU B 240 ASP B 243 0 SHEET 2 D 8 GLN B 402 VAL B 409 1 O ARG B 407 N VAL B 242 SHEET 3 D 8 PHE B 270 ALA B 277 -1 N TRP B 276 O GLN B 402 SHEET 4 D 8 THR B 384 VAL B 394 1 O ALA B 389 N PHE B 271 SHEET 5 D 8 PHE B 370 ASN B 378 -1 N ILE B 372 O CYS B 390 SHEET 6 D 8 THR B 304 SER B 313 -1 N CYS B 312 O THR B 371 SHEET 7 D 8 LYS B 316 TYR B 326 -1 O GLU B 323 N CYS B 307 SHEET 8 D 8 HIS C 52 VAL C 57 -1 O HIS C 56 N GLU B 320 SSBOND 1 CYS C 87 CYS C 96 1555 1555 2.04 SSBOND 2 CYS D 87 CYS D 96 1555 1555 2.05 CISPEP 1 GLY A 265 PRO A 266 0 -0.19 CISPEP 2 GLY B 265 PRO B 266 0 -0.20 SITE 1 AC1 3 HIS A 226 GLY A 228 HIS A 229 CRYST1 44.250 105.030 164.780 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022599 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006069 0.00000