PDB Short entry for 4RED HEADER TRANSFERASE 22-SEP-14 4RED TITLE CRYSTAL STRUCTURE OF HUMAN AMPK ALPHA1 KD-AID WITH K43A MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HUMAN AMPK KD-AID, UNP RESIDUES 22-362; COMPND 5 SYNONYM: AMPK SUBUNIT ALPHA-1, ACETYL-COA CARBOXYLASE KINASE, ACACA COMPND 6 KINASE, HYDROXYMETHYLGLUTARYL-COA REDUCTASE KINASE, HMGCR KINASE, COMPND 7 TAU-PROTEIN KINASE PRKAA1; COMPND 8 EC: 2.7.11.1, 2.7.11.27, 2.7.11.31, 2.7.11.26; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AMPK ALPHA1 (11-353), AMPK1, PRKAA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS KINASE DOMAIN FOLD, PHOSPHORYLATE NUMEROUS CELLULAR TARGETS, KEYWDS 2 UPREGULATE ATP-GENERATING PATHWAYS UPON ACTIVATION, AMPK BETA AND KEYWDS 3 GAMMA SUBUNITS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.E.ZHOU,J.KE,X.LI,L.WANG,X.GU,P.W.DE WAAL,M.H.E.TAN,D.WANG,D.WU, AUTHOR 2 H.E.XU,K.MELCHER REVDAT 4 20-SEP-23 4RED 1 SEQADV REVDAT 3 11-MAR-15 4RED 1 AUTHOR REVDAT 2 14-JAN-15 4RED 1 JRNL REVDAT 1 10-DEC-14 4RED 0 JRNL AUTH X.LI,L.WANG,X.E.ZHOU,J.KE,P.W.DE WAAL,X.GU,M.H.TAN,D.WANG, JRNL AUTH 2 D.WU,H.E.XU,K.MELCHER JRNL TITL STRUCTURAL BASIS OF AMPK REGULATION BY ADENINE NUCLEOTIDES JRNL TITL 2 AND GLYCOGEN. JRNL REF CELL RES. V. 25 50 2015 JRNL REFN ISSN 1001-0602 JRNL PMID 25412657 JRNL DOI 10.1038/CR.2014.150 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1222 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1122 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.01000 REMARK 3 B22 (A**2) : -2.01000 REMARK 3 B33 (A**2) : 4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.489 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.363 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.358 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5412 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5212 ; 0.011 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7315 ; 1.445 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12027 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 5.799 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 250 ;37.604 ;23.920 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 971 ;16.654 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;20.084 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 806 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6006 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1218 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2631 ; 4.787 ; 7.129 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2630 ; 4.787 ; 7.129 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3280 ; 7.384 ;10.688 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3281 ; 7.383 ;10.688 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2778 ; 4.863 ; 7.548 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2778 ; 4.856 ; 7.548 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4035 ; 7.386 ;11.185 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 21526 ;12.426 ;66.794 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 21526 ;12.425 ;66.794 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07806 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.30 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2H6D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M HNA2PO4/0.5 M HK2PO4, 0.1 M TRIS REMARK 280 HYDROCHLORIDE, PH 8.5, 0.1 M H(NH4)2PO4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 59.76600 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.81950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.90975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.76600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.72925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 161.72925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.76600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.90975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 59.76600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.81950 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.76600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.81950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.76600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 161.72925 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 53.90975 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.76600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 53.90975 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 161.72925 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.76600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 107.81950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -119.53200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -119.53200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 169 REMARK 465 GLU A 170 REMARK 465 PHE A 171 REMARK 465 LEU A 172 REMARK 465 ARG A 173 REMARK 465 THR A 174 REMARK 465 SER A 175 REMARK 465 CYS A 176 REMARK 465 GLY A 177 REMARK 465 ILE A 228 REMARK 465 CYS A 229 REMARK 465 ASP A 230 REMARK 465 GLY A 231 REMARK 465 PHE A 352 REMARK 465 LEU A 353 REMARK 465 MET B 3 REMARK 465 GLY B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 GLY B 11 REMARK 465 GLU B 170 REMARK 465 PHE B 171 REMARK 465 LEU B 172 REMARK 465 ARG B 173 REMARK 465 THR B 174 REMARK 465 SER B 175 REMARK 465 CYS B 176 REMARK 465 GLY B 177 REMARK 465 PHE B 352 REMARK 465 LEU B 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 ASP A 341 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 39 -64.56 -98.77 REMARK 500 ASP A 217 107.03 -59.00 REMARK 500 SER A 286 -85.64 -119.15 REMARK 500 ARG A 334 -72.95 -84.06 REMARK 500 LEU A 344 44.51 169.53 REMARK 500 THR A 346 -79.56 -86.77 REMARK 500 SER A 347 154.18 176.40 REMARK 500 LEU B 39 -62.75 -96.07 REMARK 500 PRO B 179 44.80 -74.35 REMARK 500 ASN B 180 -88.72 -131.10 REMARK 500 ASP B 218 151.43 -45.95 REMARK 500 ASN B 317 31.38 -85.17 REMARK 500 PHE B 342 -9.71 -54.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 4RED A 13 353 UNP Q13131 AAPK1_HUMAN 22 362 DBREF 4RED B 13 353 UNP Q13131 AAPK1_HUMAN 22 362 SEQADV 4RED MET A 3 UNP Q13131 EXPRESSION TAG SEQADV 4RED GLY A 4 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS A 5 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS A 6 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS A 7 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS A 8 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS A 9 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS A 10 UNP Q13131 EXPRESSION TAG SEQADV 4RED GLY A 11 UNP Q13131 EXPRESSION TAG SEQADV 4RED SER A 12 UNP Q13131 EXPRESSION TAG SEQADV 4RED ALA A 43 UNP Q13131 LYS 52 ENGINEERED MUTATION SEQADV 4RED SER A 260 UNP Q13131 THR 269 CONFLICT SEQADV 4RED THR A 287 UNP Q13131 SER 296 CONFLICT SEQADV 4RED MET B 3 UNP Q13131 EXPRESSION TAG SEQADV 4RED GLY B 4 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS B 5 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS B 6 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS B 7 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS B 8 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS B 9 UNP Q13131 EXPRESSION TAG SEQADV 4RED HIS B 10 UNP Q13131 EXPRESSION TAG SEQADV 4RED GLY B 11 UNP Q13131 EXPRESSION TAG SEQADV 4RED SER B 12 UNP Q13131 EXPRESSION TAG SEQADV 4RED ALA B 43 UNP Q13131 LYS 52 ENGINEERED MUTATION SEQADV 4RED SER B 260 UNP Q13131 THR 269 CONFLICT SEQADV 4RED THR B 287 UNP Q13131 SER 296 CONFLICT SEQRES 1 A 351 MET GLY HIS HIS HIS HIS HIS HIS GLY SER VAL LYS ILE SEQRES 2 A 351 GLY HIS TYR ILE LEU GLY ASP THR LEU GLY VAL GLY THR SEQRES 3 A 351 PHE GLY LYS VAL LYS VAL GLY LYS HIS GLU LEU THR GLY SEQRES 4 A 351 HIS ALA VAL ALA VAL LYS ILE LEU ASN ARG GLN LYS ILE SEQRES 5 A 351 ARG SER LEU ASP VAL VAL GLY LYS ILE ARG ARG GLU ILE SEQRES 6 A 351 GLN ASN LEU LYS LEU PHE ARG HIS PRO HIS ILE ILE LYS SEQRES 7 A 351 LEU TYR GLN VAL ILE SER THR PRO SER ASP ILE PHE MET SEQRES 8 A 351 VAL MET GLU TYR VAL SER GLY GLY GLU LEU PHE ASP TYR SEQRES 9 A 351 ILE CYS LYS ASN GLY ARG LEU ASP GLU LYS GLU SER ARG SEQRES 10 A 351 ARG LEU PHE GLN GLN ILE LEU SER GLY VAL ASP TYR CYS SEQRES 11 A 351 HIS ARG HIS MET VAL VAL HIS ARG ASP LEU LYS PRO GLU SEQRES 12 A 351 ASN VAL LEU LEU ASP ALA HIS MET ASN ALA LYS ILE ALA SEQRES 13 A 351 ASP PHE GLY LEU SER ASN MET MET SER ASP GLY GLU PHE SEQRES 14 A 351 LEU ARG THR SER CYS GLY SER PRO ASN TYR ALA ALA PRO SEQRES 15 A 351 GLU VAL ILE SER GLY ARG LEU TYR ALA GLY PRO GLU VAL SEQRES 16 A 351 ASP ILE TRP SER SER GLY VAL ILE LEU TYR ALA LEU LEU SEQRES 17 A 351 CYS GLY THR LEU PRO PHE ASP ASP ASP HIS VAL PRO THR SEQRES 18 A 351 LEU PHE LYS LYS ILE CYS ASP GLY ILE PHE TYR THR PRO SEQRES 19 A 351 GLN TYR LEU ASN PRO SER VAL ILE SER LEU LEU LYS HIS SEQRES 20 A 351 MET LEU GLN VAL ASP PRO MET LYS ARG ALA SER ILE LYS SEQRES 21 A 351 ASP ILE ARG GLU HIS GLU TRP PHE LYS GLN ASP LEU PRO SEQRES 22 A 351 LYS TYR LEU PHE PRO GLU ASP PRO SER TYR SER THR THR SEQRES 23 A 351 MET ILE ASP ASP GLU ALA LEU LYS GLU VAL CYS GLU LYS SEQRES 24 A 351 PHE GLU CYS SER GLU GLU GLU VAL LEU SER CYS LEU TYR SEQRES 25 A 351 ASN ARG ASN HIS GLN ASP PRO LEU ALA VAL ALA TYR HIS SEQRES 26 A 351 LEU ILE ILE ASP ASN ARG ARG ILE MET ASN GLU ALA LYS SEQRES 27 A 351 ASP PHE TYR LEU ALA THR SER PRO PRO ASP SER PHE LEU SEQRES 1 B 351 MET GLY HIS HIS HIS HIS HIS HIS GLY SER VAL LYS ILE SEQRES 2 B 351 GLY HIS TYR ILE LEU GLY ASP THR LEU GLY VAL GLY THR SEQRES 3 B 351 PHE GLY LYS VAL LYS VAL GLY LYS HIS GLU LEU THR GLY SEQRES 4 B 351 HIS ALA VAL ALA VAL LYS ILE LEU ASN ARG GLN LYS ILE SEQRES 5 B 351 ARG SER LEU ASP VAL VAL GLY LYS ILE ARG ARG GLU ILE SEQRES 6 B 351 GLN ASN LEU LYS LEU PHE ARG HIS PRO HIS ILE ILE LYS SEQRES 7 B 351 LEU TYR GLN VAL ILE SER THR PRO SER ASP ILE PHE MET SEQRES 8 B 351 VAL MET GLU TYR VAL SER GLY GLY GLU LEU PHE ASP TYR SEQRES 9 B 351 ILE CYS LYS ASN GLY ARG LEU ASP GLU LYS GLU SER ARG SEQRES 10 B 351 ARG LEU PHE GLN GLN ILE LEU SER GLY VAL ASP TYR CYS SEQRES 11 B 351 HIS ARG HIS MET VAL VAL HIS ARG ASP LEU LYS PRO GLU SEQRES 12 B 351 ASN VAL LEU LEU ASP ALA HIS MET ASN ALA LYS ILE ALA SEQRES 13 B 351 ASP PHE GLY LEU SER ASN MET MET SER ASP GLY GLU PHE SEQRES 14 B 351 LEU ARG THR SER CYS GLY SER PRO ASN TYR ALA ALA PRO SEQRES 15 B 351 GLU VAL ILE SER GLY ARG LEU TYR ALA GLY PRO GLU VAL SEQRES 16 B 351 ASP ILE TRP SER SER GLY VAL ILE LEU TYR ALA LEU LEU SEQRES 17 B 351 CYS GLY THR LEU PRO PHE ASP ASP ASP HIS VAL PRO THR SEQRES 18 B 351 LEU PHE LYS LYS ILE CYS ASP GLY ILE PHE TYR THR PRO SEQRES 19 B 351 GLN TYR LEU ASN PRO SER VAL ILE SER LEU LEU LYS HIS SEQRES 20 B 351 MET LEU GLN VAL ASP PRO MET LYS ARG ALA SER ILE LYS SEQRES 21 B 351 ASP ILE ARG GLU HIS GLU TRP PHE LYS GLN ASP LEU PRO SEQRES 22 B 351 LYS TYR LEU PHE PRO GLU ASP PRO SER TYR SER THR THR SEQRES 23 B 351 MET ILE ASP ASP GLU ALA LEU LYS GLU VAL CYS GLU LYS SEQRES 24 B 351 PHE GLU CYS SER GLU GLU GLU VAL LEU SER CYS LEU TYR SEQRES 25 B 351 ASN ARG ASN HIS GLN ASP PRO LEU ALA VAL ALA TYR HIS SEQRES 26 B 351 LEU ILE ILE ASP ASN ARG ARG ILE MET ASN GLU ALA LYS SEQRES 27 B 351 ASP PHE TYR LEU ALA THR SER PRO PRO ASP SER PHE LEU FORMUL 3 HOH *30(H2 O) HELIX 1 1 ARG A 51 ASP A 58 1 8 HELIX 2 2 GLY A 61 ASN A 69 1 9 HELIX 3 3 GLU A 102 ASN A 110 1 9 HELIX 4 4 ASP A 114 MET A 136 1 23 HELIX 5 5 LYS A 143 GLU A 145 5 3 HELIX 6 6 ALA A 183 SER A 188 1 6 HELIX 7 7 GLY A 194 GLY A 212 1 19 HELIX 8 8 VAL A 221 PHE A 225 5 5 HELIX 9 9 ASN A 240 LEU A 251 1 12 HELIX 10 10 ASP A 254 ARG A 258 5 5 HELIX 11 11 SER A 260 GLU A 266 1 7 HELIX 12 12 HIS A 267 GLN A 272 1 6 HELIX 13 13 ASP A 291 PHE A 302 1 12 HELIX 14 14 SER A 305 ASN A 315 1 11 HELIX 15 15 ASP A 320 ASN A 332 1 13 HELIX 16 16 ARG B 51 ASP B 58 1 8 HELIX 17 17 GLY B 61 ASN B 69 1 9 HELIX 18 18 GLU B 102 GLY B 111 1 10 HELIX 19 19 ASP B 114 HIS B 135 1 22 HELIX 20 20 LYS B 143 GLU B 145 5 3 HELIX 21 21 ALA B 183 SER B 188 1 6 HELIX 22 22 GLY B 194 GLY B 212 1 19 HELIX 23 23 HIS B 220 GLY B 231 1 12 HELIX 24 24 ASN B 240 LEU B 251 1 12 HELIX 25 25 ASP B 254 ARG B 258 5 5 HELIX 26 26 SER B 260 GLU B 266 1 7 HELIX 27 27 HIS B 267 GLN B 272 1 6 HELIX 28 28 PRO B 275 PHE B 279 5 5 HELIX 29 29 SER B 286 ILE B 290 5 5 HELIX 30 30 ASP B 291 PHE B 302 1 12 HELIX 31 31 SER B 305 ASN B 315 1 11 HELIX 32 32 ASP B 320 ASN B 332 1 13 HELIX 33 33 GLU B 338 PHE B 342 5 5 SHEET 1 A 6 LYS A 14 ILE A 15 0 SHEET 2 A 6 TYR A 18 VAL A 26 -1 O TYR A 18 N ILE A 15 SHEET 3 A 6 LYS A 31 HIS A 37 -1 O VAL A 32 N GLY A 25 SHEET 4 A 6 ALA A 43 ASN A 50 -1 O VAL A 44 N GLY A 35 SHEET 5 A 6 ASP A 90 GLU A 96 -1 O ILE A 91 N LEU A 49 SHEET 6 A 6 LEU A 81 SER A 86 -1 N GLN A 83 O VAL A 94 SHEET 1 B 2 VAL A 147 LEU A 149 0 SHEET 2 B 2 ALA A 155 ILE A 157 -1 O LYS A 156 N LEU A 148 SHEET 1 C 6 VAL B 13 ILE B 15 0 SHEET 2 C 6 TYR B 18 VAL B 26 -1 O LEU B 20 N VAL B 13 SHEET 3 C 6 LYS B 31 HIS B 37 -1 O VAL B 32 N LEU B 24 SHEET 4 C 6 ALA B 43 ASN B 50 -1 O VAL B 44 N GLY B 35 SHEET 5 C 6 ASP B 90 GLU B 96 -1 O ILE B 91 N LEU B 49 SHEET 6 C 6 LEU B 81 SER B 86 -1 N ILE B 85 O PHE B 92 SHEET 1 D 2 VAL B 147 LEU B 149 0 SHEET 2 D 2 ALA B 155 ILE B 157 -1 O LYS B 156 N LEU B 148 CRYST1 119.532 119.532 215.639 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008366 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004637 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.221744 -0.975105 0.000106 -72.72817 1 MTRIX2 2 -0.975101 0.221743 0.002865 -58.13783 1 MTRIX3 2 -0.002818 0.000532 -0.999996 11.14912 1