PDB Short entry for 4RER HEADER TRANSFERASE 23-SEP-14 4RER TITLE CRYSTAL STRUCTURE OF THE PHOSPHORYLATED HUMAN ALPHA1 BETA2 GAMMA1 TITLE 2 HOLO-AMPK COMPLEX BOUND TO AMP AND CYCLODEXTRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN AMPK ALPHA1 SUBUNIT [G11-Q550]; COMPND 5 SYNONYM: AMPK SUBUNIT ALPHA-1, ACETYL-COA CARBOXYLASE KINASE, ACACA COMPND 6 KINASE, HYDROXYMETHYLGLUTARYL-COA REDUCTASE KINASE, HMGCR KINASE, COMPND 7 TAU-PROTEIN KINASE PRKAA1; COMPND 8 EC: 2.7.11.1, 2.7.11.27, 2.7.11.31, 2.7.11.26; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: HUMAN AMPK BETA2 SUBUNIT [A76-I272]; COMPND 15 SYNONYM: AMPK SUBUNIT BETA-2; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1; COMPND 19 CHAIN: G; COMPND 20 FRAGMENT: HUMAN AMPK GAMMA1 SUBUNIT [S24-G327]; COMPND 21 SYNONYM: AMPK GAMMA1, AMPK SUBUNIT GAMMA-1, AMPKG; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AMPK1, HUMAN HOLO-AMPK ALPHA1 SUBUNIT, PRKAA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HUMAN HOLO-AMPK BETA2 SUBUNIT, PRKAB2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: HUMAN HOLO-AMPK GAMMA1 SUBUNIT, PRKAG1; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS HUMAN ALPHA1 BETA2 GAMMA1 HOLO-AMPK COMPLEX, SERINE/THREONINE PROTEIN KEYWDS 2 KINASE, AXIN, CAMKKBETA, LKB1, GLYCOGEN, PHOSPHORYLATION, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.E.ZHOU,J.KE,X.LI,L.WANG,X.GU,P.W.DE WAAL,M.H.E.TAN,D.WANG,D.WU, AUTHOR 2 H.E.XU,K.MELCHER REVDAT 5 20-SEP-23 4RER 1 HETSYN REVDAT 4 29-JUL-20 4RER 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM HETSYN FORMUL LINK REVDAT 4 3 1 SITE ATOM REVDAT 3 11-MAR-15 4RER 1 AUTHOR REVDAT 2 14-JAN-15 4RER 1 JRNL REVDAT 1 10-DEC-14 4RER 0 JRNL AUTH X.LI,L.WANG,X.E.ZHOU,J.KE,P.W.DE WAAL,X.GU,M.H.TAN,D.WANG, JRNL AUTH 2 D.WU,H.E.XU,K.MELCHER JRNL TITL STRUCTURAL BASIS OF AMPK REGULATION BY ADENINE NUCLEOTIDES JRNL TITL 2 AND GLYCOGEN. JRNL REF CELL RES. V. 25 50 2015 JRNL REFN ISSN 1001-0602 JRNL PMID 25412657 JRNL DOI 10.1038/CR.2014.150 REMARK 2 REMARK 2 RESOLUTION. 4.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM-LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 16566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.320 REMARK 3 FREE R VALUE TEST SET COUNT : 1213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6586 - 8.3942 1.00 1810 159 0.1812 0.2279 REMARK 3 2 8.3942 - 6.6731 1.00 1728 168 0.2219 0.2266 REMARK 3 3 6.6731 - 5.8326 1.00 1733 120 0.2291 0.2291 REMARK 3 4 5.8326 - 5.3006 1.00 1683 156 0.2224 0.2535 REMARK 3 5 5.3006 - 4.9215 1.00 1726 109 0.2225 0.2653 REMARK 3 6 4.9215 - 4.6318 1.00 1706 117 0.2257 0.2919 REMARK 3 7 4.6318 - 4.4001 1.00 1705 130 0.2532 0.3375 REMARK 3 8 4.4001 - 4.2088 1.00 1707 111 0.2896 0.3320 REMARK 3 9 4.2088 - 4.0469 0.93 1555 143 0.3169 0.3535 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 8005 REMARK 3 ANGLE : 0.964 10885 REMARK 3 CHIRALITY : 0.040 1226 REMARK 3 PLANARITY : 0.006 1337 REMARK 3 DIHEDRAL : 17.872 2982 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 59.3918 -41.5710 17.4551 REMARK 3 T TENSOR REMARK 3 T11: 1.5056 T22: 1.3797 REMARK 3 T33: 1.4497 T12: -0.1368 REMARK 3 T13: 0.0322 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 3.4620 L22: 1.7250 REMARK 3 L33: 2.3653 L12: -1.8943 REMARK 3 L13: 0.5936 L23: -0.2680 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: 0.0704 S13: -0.2423 REMARK 3 S21: 0.1674 S22: 0.0523 S23: 0.1015 REMARK 3 S31: 0.1874 S32: -0.2247 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 78:167 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5702 -44.0271 -23.5219 REMARK 3 T TENSOR REMARK 3 T11: 3.0111 T22: 2.6888 REMARK 3 T33: 2.5007 T12: -0.0710 REMARK 3 T13: -0.0437 T23: -0.3303 REMARK 3 L TENSOR REMARK 3 L11: 0.1301 L22: 1.0847 REMARK 3 L33: 0.3992 L12: -0.3970 REMARK 3 L13: 0.0243 L23: -0.2226 REMARK 3 S TENSOR REMARK 3 S11: 0.1977 S12: 1.2238 S13: -0.2751 REMARK 3 S21: -0.5660 S22: 0.1161 S23: -0.2330 REMARK 3 S31: 0.4100 S32: -0.4952 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESID 182:272 REMARK 3 ORIGIN FOR THE GROUP (A): 75.0015 -53.5780 20.5358 REMARK 3 T TENSOR REMARK 3 T11: 1.7248 T22: 1.5968 REMARK 3 T33: 1.4856 T12: -0.0020 REMARK 3 T13: -0.0020 T23: -0.0633 REMARK 3 L TENSOR REMARK 3 L11: 2.4998 L22: 3.0879 REMARK 3 L33: 0.6707 L12: 0.2949 REMARK 3 L13: -0.8278 L23: -0.8643 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: 0.1735 S13: 0.2273 REMARK 3 S21: -0.7988 S22: -0.0272 S23: -0.3635 REMARK 3 S31: 0.3259 S32: 0.1178 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): 69.7181 -66.4984 50.3439 REMARK 3 T TENSOR REMARK 3 T11: 1.3380 T22: 1.0504 REMARK 3 T33: 1.4390 T12: -0.0501 REMARK 3 T13: 0.0413 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 2.9978 L22: 1.8646 REMARK 3 L33: 4.7935 L12: -0.1449 REMARK 3 L13: 0.5101 L23: -0.6097 REMARK 3 S TENSOR REMARK 3 S11: -0.1475 S12: -0.1842 S13: -0.1991 REMARK 3 S21: -0.0741 S22: 0.1152 S23: 0.2525 REMARK 3 S31: 0.4192 S32: -0.3697 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16621 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.050 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.18600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Y94 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 4000,0.1 M HEPES, PH7.8, 10% 2 REMARK 280 -PROPANOL (V/V) AND 0.19 MM 7-CYCLOHEXYL-1-HEPTYL-D-MALTOSIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.26133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.13067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.13067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 130.26133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE HETEROTRIMERIC SERINE/THREONINE PROTEIN KINASE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 287 REMARK 465 THR A 288 REMARK 465 MET A 289 REMARK 465 ILE A 290 REMARK 465 ASP A 350 REMARK 465 SER A 351 REMARK 465 PHE A 352 REMARK 465 LEU A 353 REMARK 465 ARG A 375 REMARK 465 ALA A 376 REMARK 465 ARG A 377 REMARK 465 HIS A 378 REMARK 465 THR A 379 REMARK 465 LEU A 380 REMARK 465 ASP A 381 REMARK 465 GLU A 382 REMARK 465 LEU A 383 REMARK 465 ASN A 384 REMARK 465 PRO A 385 REMARK 465 GLN A 386 REMARK 465 LYS A 387 REMARK 465 SER A 388 REMARK 465 LYS A 389 REMARK 465 HIS A 390 REMARK 465 GLN A 391 REMARK 465 GLY A 392 REMARK 465 VAL A 393 REMARK 465 THR A 473 REMARK 465 ALA A 474 REMARK 465 ALA A 475 REMARK 465 ALA A 476 REMARK 465 SER A 477 REMARK 465 GLY A 478 REMARK 465 THR A 479 REMARK 465 ALA A 480 REMARK 465 THR A 481 REMARK 465 PRO A 482 REMARK 465 GLN A 483 REMARK 465 ARG A 484 REMARK 465 SER A 485 REMARK 465 GLY A 486 REMARK 465 SER A 487 REMARK 465 VAL A 488 REMARK 465 SER A 489 REMARK 465 ASN A 490 REMARK 465 TYR A 491 REMARK 465 ARG A 492 REMARK 465 SER A 493 REMARK 465 CYS A 494 REMARK 465 GLN A 495 REMARK 465 ARG A 496 REMARK 465 SER A 497 REMARK 465 ASP A 498 REMARK 465 SER A 499 REMARK 465 ASP A 500 REMARK 465 ALA A 501 REMARK 465 GLU A 502 REMARK 465 ALA A 503 REMARK 465 GLN A 504 REMARK 465 GLY A 505 REMARK 465 LYS A 506 REMARK 465 SER A 507 REMARK 465 SER A 508 REMARK 465 GLU A 509 REMARK 465 VAL A 510 REMARK 465 SER A 511 REMARK 465 LEU A 512 REMARK 465 THR A 513 REMARK 465 SER A 514 REMARK 465 SER A 515 REMARK 465 VAL A 516 REMARK 465 THR A 517 REMARK 465 SER A 518 REMARK 465 LEU A 519 REMARK 465 ASP A 520 REMARK 465 SER A 521 REMARK 465 SER A 522 REMARK 465 PRO A 523 REMARK 465 VAL A 524 REMARK 465 ASP A 525 REMARK 465 LEU A 526 REMARK 465 ALA B 76 REMARK 465 ARG B 77 REMARK 465 LEU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 MET B 171 REMARK 465 GLU B 172 REMARK 465 SER B 173 REMARK 465 SER B 174 REMARK 465 GLU B 175 REMARK 465 THR B 176 REMARK 465 SER B 177 REMARK 465 CYS B 178 REMARK 465 ARG B 179 REMARK 465 ASP B 180 REMARK 465 LEU B 181 REMARK 465 SER G 24 REMARK 465 THR G 325 REMARK 465 GLY G 326 REMARK 465 GLY G 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR G 287 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 39 -69.53 -95.02 REMARK 500 ALA A 158 -74.44 -104.41 REMARK 500 LEU A 210 -62.33 -122.57 REMARK 500 TYR A 285 -68.25 -107.48 REMARK 500 ASP A 292 -169.28 -162.85 REMARK 500 SER A 305 -10.79 74.12 REMARK 500 ASP A 423 3.99 89.31 REMARK 500 VAL A 429 -62.67 -94.77 REMARK 500 PRO A 530 53.09 -95.56 REMARK 500 VAL B 162 -57.55 -122.61 REMARK 500 PRO B 186 85.11 -64.55 REMARK 500 MET B 193 -3.69 82.06 REMARK 500 ALA B 195 165.55 179.62 REMARK 500 PHE B 196 -69.86 -134.94 REMARK 500 VAL G 28 -58.80 -121.58 REMARK 500 LYS G 100 -62.18 -122.64 REMARK 500 GLN G 105 -78.06 -117.60 REMARK 500 GLU G 187 -75.06 -129.60 REMARK 500 ALA G 202 -72.46 -82.21 REMARK 500 TYR G 272 -54.82 -126.91 REMARK 500 ASP G 304 -168.31 -125.21 REMARK 500 LYS G 310 -55.45 -120.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RED RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN AMPK ALPHA1 KD-AID WITH K43A MUTATION REMARK 900 RELATED ID: 4REW RELATED DB: PDB DBREF 4RER A 11 550 UNP Q13131 AAPK1_HUMAN 20 559 DBREF 4RER B 76 272 UNP O43741 AAKB2_HUMAN 76 272 DBREF 4RER G 24 327 UNP P54619 AAKG1_HUMAN 24 327 SEQADV 4RER SER A 12 UNP Q13131 ARG 21 CONFLICT SEQADV 4RER SER A 260 UNP Q13131 THR 269 CONFLICT SEQADV 4RER GLY A 471 UNP Q13131 GLU 480 ENGINEERED MUTATION SEQADV 4RER ALA A 474 UNP Q13131 GLU 483 ENGINEERED MUTATION SEQADV 4RER ALA A 476 UNP Q13131 LYS 485 ENGINEERED MUTATION SEQRES 1 A 540 GLY SER VAL LYS ILE GLY HIS TYR ILE LEU GLY ASP THR SEQRES 2 A 540 LEU GLY VAL GLY THR PHE GLY LYS VAL LYS VAL GLY LYS SEQRES 3 A 540 HIS GLU LEU THR GLY HIS LYS VAL ALA VAL LYS ILE LEU SEQRES 4 A 540 ASN ARG GLN LYS ILE ARG SER LEU ASP VAL VAL GLY LYS SEQRES 5 A 540 ILE ARG ARG GLU ILE GLN ASN LEU LYS LEU PHE ARG HIS SEQRES 6 A 540 PRO HIS ILE ILE LYS LEU TYR GLN VAL ILE SER THR PRO SEQRES 7 A 540 SER ASP ILE PHE MET VAL MET GLU TYR VAL SER GLY GLY SEQRES 8 A 540 GLU LEU PHE ASP TYR ILE CYS LYS ASN GLY ARG LEU ASP SEQRES 9 A 540 GLU LYS GLU SER ARG ARG LEU PHE GLN GLN ILE LEU SER SEQRES 10 A 540 GLY VAL ASP TYR CYS HIS ARG HIS MET VAL VAL HIS ARG SEQRES 11 A 540 ASP LEU LYS PRO GLU ASN VAL LEU LEU ASP ALA HIS MET SEQRES 12 A 540 ASN ALA LYS ILE ALA ASP PHE GLY LEU SER ASN MET MET SEQRES 13 A 540 SER ASP GLY GLU PHE LEU ARG TPO SER CYS GLY SER PRO SEQRES 14 A 540 ASN TYR ALA ALA PRO GLU VAL ILE SER GLY ARG LEU TYR SEQRES 15 A 540 ALA GLY PRO GLU VAL ASP ILE TRP SER SER GLY VAL ILE SEQRES 16 A 540 LEU TYR ALA LEU LEU CYS GLY THR LEU PRO PHE ASP ASP SEQRES 17 A 540 ASP HIS VAL PRO THR LEU PHE LYS LYS ILE CYS ASP GLY SEQRES 18 A 540 ILE PHE TYR THR PRO GLN TYR LEU ASN PRO SER VAL ILE SEQRES 19 A 540 SER LEU LEU LYS HIS MET LEU GLN VAL ASP PRO MET LYS SEQRES 20 A 540 ARG ALA SER ILE LYS ASP ILE ARG GLU HIS GLU TRP PHE SEQRES 21 A 540 LYS GLN ASP LEU PRO LYS TYR LEU PHE PRO GLU ASP PRO SEQRES 22 A 540 SER TYR SER SER THR MET ILE ASP ASP GLU ALA LEU LYS SEQRES 23 A 540 GLU VAL CYS GLU LYS PHE GLU CYS SER GLU GLU GLU VAL SEQRES 24 A 540 LEU SER CYS LEU TYR ASN ARG ASN HIS GLN ASP PRO LEU SEQRES 25 A 540 ALA VAL ALA TYR HIS LEU ILE ILE ASP ASN ARG ARG ILE SEQRES 26 A 540 MET ASN GLU ALA LYS ASP PHE TYR LEU ALA THR SER PRO SEQRES 27 A 540 PRO ASP SER PHE LEU ASP ASP HIS HIS LEU THR ARG PRO SEQRES 28 A 540 HIS PRO GLU ARG VAL PRO PHE LEU VAL ALA GLU THR PRO SEQRES 29 A 540 ARG ALA ARG HIS THR LEU ASP GLU LEU ASN PRO GLN LYS SEQRES 30 A 540 SER LYS HIS GLN GLY VAL ARG LYS ALA LYS TRP HIS LEU SEQRES 31 A 540 GLY ILE ARG SER GLN SER ARG PRO ASN ASP ILE MET ALA SEQRES 32 A 540 GLU VAL CYS ARG ALA ILE LYS GLN LEU ASP TYR GLU TRP SEQRES 33 A 540 LYS VAL VAL ASN PRO TYR TYR LEU ARG VAL ARG ARG LYS SEQRES 34 A 540 ASN PRO VAL THR SER THR TYR SER LYS MET SER LEU GLN SEQRES 35 A 540 LEU TYR GLN VAL ASP SER ARG THR TYR LEU LEU ASP PHE SEQRES 36 A 540 ARG SER ILE ASP ASP GLY ILE THR ALA ALA ALA SER GLY SEQRES 37 A 540 THR ALA THR PRO GLN ARG SER GLY SER VAL SER ASN TYR SEQRES 38 A 540 ARG SER CYS GLN ARG SER ASP SER ASP ALA GLU ALA GLN SEQRES 39 A 540 GLY LYS SER SER GLU VAL SER LEU THR SER SER VAL THR SEQRES 40 A 540 SER LEU ASP SER SER PRO VAL ASP LEU THR PRO ARG PRO SEQRES 41 A 540 GLY SER HIS THR ILE GLU PHE PHE GLU MET CYS ALA ASN SEQRES 42 A 540 LEU ILE LYS ILE LEU ALA GLN SEQRES 1 B 197 ALA ARG PRO THR VAL ILE ARG TRP SER GLU GLY GLY LYS SEQRES 2 B 197 GLU VAL PHE ILE SER GLY SER PHE ASN ASN TRP SER THR SEQRES 3 B 197 LYS ILE PRO LEU ILE LYS SEP HIS ASN ASP PHE VAL ALA SEQRES 4 B 197 ILE LEU ASP LEU PRO GLU GLY GLU HIS GLN TYR LYS PHE SEQRES 5 B 197 PHE VAL ASP GLY GLN TRP VAL HIS ASP PRO SER GLU PRO SEQRES 6 B 197 VAL VAL THR SER GLN LEU GLY THR ILE ASN ASN LEU ILE SEQRES 7 B 197 HIS VAL LYS LYS SER ASP PHE GLU VAL PHE ASP ALA LEU SEQRES 8 B 197 LYS LEU ASP SER MET GLU SER SER GLU THR SER CYS ARG SEQRES 9 B 197 ASP LEU SER SER SER PRO PRO GLY PRO TYR GLY GLN GLU SEQRES 10 B 197 MET TYR ALA PHE ARG SER GLU GLU ARG PHE LYS SER PRO SEQRES 11 B 197 PRO ILE LEU PRO PRO HIS LEU LEU GLN VAL ILE LEU ASN SEQRES 12 B 197 LYS ASP THR ASN ILE SER CYS ASP PRO ALA LEU LEU PRO SEQRES 13 B 197 GLU PRO ASN HIS VAL MET LEU ASN HIS LEU TYR ALA LEU SEQRES 14 B 197 SER ILE LYS ASP SER VAL MET VAL LEU SER ALA THR HIS SEQRES 15 B 197 ARG TYR LYS LYS LYS TYR VAL THR THR LEU LEU TYR LYS SEQRES 16 B 197 PRO ILE SEQRES 1 G 304 SER ASN ASN SER VAL TYR THR SER PHE MET LYS SER HIS SEQRES 2 G 304 ARG CYS TYR ASP LEU ILE PRO THR SER SER LYS LEU VAL SEQRES 3 G 304 VAL PHE ASP THR SER LEU GLN VAL LYS LYS ALA PHE PHE SEQRES 4 G 304 ALA LEU VAL THR ASN GLY VAL ARG ALA ALA PRO LEU TRP SEQRES 5 G 304 ASP SER LYS LYS GLN SER PHE VAL GLY MET LEU THR ILE SEQRES 6 G 304 THR ASP PHE ILE ASN ILE LEU HIS ARG TYR TYR LYS SER SEQRES 7 G 304 ALA LEU VAL GLN ILE TYR GLU LEU GLU GLU HIS LYS ILE SEQRES 8 G 304 GLU THR TRP ARG GLU VAL TYR LEU GLN ASP SER PHE LYS SEQRES 9 G 304 PRO LEU VAL CYS ILE SER PRO ASN ALA SER LEU PHE ASP SEQRES 10 G 304 ALA VAL SER SER LEU ILE ARG ASN LYS ILE HIS ARG LEU SEQRES 11 G 304 PRO VAL ILE ASP PRO GLU SER GLY ASN THR LEU TYR ILE SEQRES 12 G 304 LEU THR HIS LYS ARG ILE LEU LYS PHE LEU LYS LEU PHE SEQRES 13 G 304 ILE THR GLU PHE PRO LYS PRO GLU PHE MET SER LYS SER SEQRES 14 G 304 LEU GLU GLU LEU GLN ILE GLY THR TYR ALA ASN ILE ALA SEQRES 15 G 304 MET VAL ARG THR THR THR PRO VAL TYR VAL ALA LEU GLY SEQRES 16 G 304 ILE PHE VAL GLN HIS ARG VAL SER ALA LEU PRO VAL VAL SEQRES 17 G 304 ASP GLU LYS GLY ARG VAL VAL ASP ILE TYR SER LYS PHE SEQRES 18 G 304 ASP VAL ILE ASN LEU ALA ALA GLU LYS THR TYR ASN ASN SEQRES 19 G 304 LEU ASP VAL SER VAL THR LYS ALA LEU GLN HIS ARG SER SEQRES 20 G 304 HIS TYR PHE GLU GLY VAL LEU LYS CYS TYR LEU HIS GLU SEQRES 21 G 304 THR LEU GLU THR ILE ILE ASN ARG LEU VAL GLU ALA GLU SEQRES 22 G 304 VAL HIS ARG LEU VAL VAL VAL ASP GLU ASN ASP VAL VAL SEQRES 23 G 304 LYS GLY ILE VAL SER LEU SER ASP ILE LEU GLN ALA LEU SEQRES 24 G 304 VAL LEU THR GLY GLY MODRES 4RER TPO A 174 THR PHOSPHOTHREONINE MODRES 4RER SEP B 108 SER PHOSPHOSERINE HET TPO A 174 11 HET SEP B 108 10 HET GLC C 1 11 HET GLC C 2 11 HET GLC C 3 11 HET GLC C 4 11 HET GLC C 5 11 HET GLC C 6 11 HET GLC C 7 11 HET STU A 601 35 HET EPE A 602 15 HET AMP G 401 23 HET AMP G 402 23 HET AMP G 403 23 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM STU STAUROSPORINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EPE HEPES FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 SEP C3 H8 N O6 P FORMUL 4 GLC 7(C6 H12 O6) FORMUL 5 STU C28 H26 N4 O3 FORMUL 6 EPE C8 H18 N2 O4 S FORMUL 7 AMP 3(C10 H14 N5 O7 P) HELIX 1 1 ARG A 51 LEU A 57 1 7 HELIX 2 2 VAL A 59 LEU A 72 1 14 HELIX 3 3 LEU A 103 GLY A 111 1 9 HELIX 4 4 ASP A 114 HIS A 135 1 22 HELIX 5 5 GLY A 194 LEU A 209 1 16 HELIX 6 6 PRO A 222 ASP A 230 1 9 HELIX 7 7 ASN A 240 LEU A 251 1 12 HELIX 8 8 SER A 260 GLU A 266 1 7 HELIX 9 9 HIS A 267 GLN A 272 1 6 HELIX 10 10 ASP A 292 LYS A 296 5 5 HELIX 11 11 GLU A 297 PHE A 302 1 6 HELIX 12 12 VAL A 309 ASN A 315 1 7 HELIX 13 13 TYR A 326 GLU A 338 1 13 HELIX 14 14 HIS A 362 GLU A 364 5 3 HELIX 15 15 ARG A 365 THR A 373 1 9 HELIX 16 16 ARG A 407 LEU A 422 1 16 HELIX 17 17 SER A 532 GLN A 550 1 19 HELIX 18 18 PRO B 209 GLN B 214 1 6 HELIX 19 19 ASN B 234 LEU B 238 5 5 HELIX 20 20 VAL G 28 SER G 35 1 8 HELIX 21 21 ARG G 37 ILE G 42 5 6 HELIX 22 22 GLN G 56 GLY G 68 1 13 HELIX 23 23 ILE G 88 TYR G 98 1 11 HELIX 24 24 ILE G 106 GLU G 111 1 6 HELIX 25 25 LYS G 113 LEU G 122 1 10 HELIX 26 26 SER G 137 ASN G 148 1 12 HELIX 27 27 THR G 168 ILE G 180 1 13 HELIX 28 28 SER G 192 GLN G 197 1 6 HELIX 29 29 PRO G 212 HIS G 223 1 12 HELIX 30 30 VAL G 246 GLU G 252 1 7 HELIX 31 31 SER G 261 LEU G 266 1 6 HELIX 32 32 GLN G 267 ARG G 269 5 3 HELIX 33 33 THR G 284 GLU G 296 1 13 HELIX 34 34 LEU G 315 LEU G 324 1 10 SHEET 1 A 6 LYS A 14 ILE A 15 0 SHEET 2 A 6 TYR A 18 GLY A 25 -1 O TYR A 18 N ILE A 15 SHEET 3 A 6 VAL A 32 HIS A 37 -1 O VAL A 34 N GLY A 21 SHEET 4 A 6 LYS A 43 ASN A 50 -1 O VAL A 44 N GLY A 35 SHEET 5 A 6 ASP A 90 GLU A 96 -1 O ILE A 91 N LEU A 49 SHEET 6 A 6 LEU A 81 GLN A 83 -1 N GLN A 83 O VAL A 94 SHEET 1 B 3 GLY A 101 GLU A 102 0 SHEET 2 B 3 VAL A 147 LEU A 149 -1 O LEU A 149 N GLY A 101 SHEET 3 B 3 LYS A 156 ILE A 157 -1 O LYS A 156 N LEU A 148 SHEET 1 C 2 VAL A 137 VAL A 138 0 SHEET 2 C 2 ASN A 164 MET A 165 -1 O ASN A 164 N VAL A 138 SHEET 1 D 5 ILE A 402 SER A 404 0 SHEET 2 D 5 THR A 460 ARG A 466 -1 O LEU A 463 N ILE A 402 SHEET 3 D 5 TYR A 446 ASP A 457 -1 N TYR A 454 O LEU A 462 SHEET 4 D 5 TYR A 433 LYS A 439 -1 N VAL A 436 O MET A 449 SHEET 5 D 5 GLU A 425 ASN A 430 -1 N LYS A 427 O ARG A 435 SHEET 1 E 3 THR B 79 ILE B 81 0 SHEET 2 E 3 PHE B 112 LEU B 116 -1 O LEU B 116 N THR B 79 SHEET 3 E 3 ILE B 106 LYS B 107 -1 N ILE B 106 O VAL B 113 SHEET 1 F 4 ILE B 103 PRO B 104 0 SHEET 2 F 4 VAL B 90 ILE B 92 -1 N ILE B 92 O ILE B 103 SHEET 3 F 4 PHE B 127 VAL B 129 -1 O PHE B 128 N PHE B 91 SHEET 4 F 4 GLN B 132 VAL B 134 -1 O VAL B 134 N PHE B 127 SHEET 1 G 3 GLN B 124 TYR B 125 0 SHEET 2 G 3 ILE B 149 LEU B 152 -1 O ASN B 151 N TYR B 125 SHEET 3 G 3 VAL B 141 THR B 143 -1 N VAL B 142 O ASN B 150 SHEET 1 H 6 LEU B 241 LEU B 244 0 SHEET 2 H 6 VAL B 250 ARG B 258 -1 O SER B 254 N TYR B 242 SHEET 3 H 6 TYR B 263 PRO B 271 -1 O LYS B 270 N MET B 251 SHEET 4 H 6 SER G 45 ASP G 52 1 O LEU G 48 N LEU B 267 SHEET 5 H 6 ALA G 71 ASP G 76 1 O TRP G 75 N PHE G 51 SHEET 6 H 6 SER G 81 THR G 87 -1 O GLY G 84 N LEU G 74 SHEET 1 I 2 LEU G 153 ILE G 156 0 SHEET 2 I 2 THR G 163 LEU G 167 -1 O TYR G 165 N VAL G 155 SHEET 1 J 3 VAL G 207 ARG G 208 0 SHEET 2 J 3 ALA G 227 VAL G 231 1 O VAL G 231 N VAL G 207 SHEET 3 J 3 VAL G 237 SER G 242 -1 O TYR G 241 N LEU G 228 SHEET 1 K 3 LYS G 278 TYR G 280 0 SHEET 2 K 3 ARG G 299 VAL G 303 1 O VAL G 303 N CYS G 279 SHEET 3 K 3 VAL G 309 SER G 314 -1 O VAL G 313 N LEU G 300 LINK C ARG A 173 N TPO A 174 1555 1555 1.34 LINK C TPO A 174 N SER A 175 1555 1555 1.33 LINK C LYS B 107 N SEP B 108 1555 1555 1.33 LINK C SEP B 108 N HIS B 109 1555 1555 1.33 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.46 LINK C1 GLC C 1 O4 GLC C 7 1555 1555 1.44 LINK O4 GLC C 2 C1 GLC C 3 1555 1555 1.40 LINK O4 GLC C 3 C1 GLC C 4 1555 1555 1.43 LINK O4 GLC C 4 C1 GLC C 5 1555 1555 1.38 LINK O4 GLC C 5 C1 GLC C 6 1555 1555 1.41 LINK O4 GLC C 6 C1 GLC C 7 1555 1555 1.42 CISPEP 1 VAL A 221 PRO A 222 0 1.72 CRYST1 132.566 132.566 195.392 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007543 0.004355 0.000000 0.00000 SCALE2 0.000000 0.008710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005118 0.00000