PDB Short entry for 4ROD HEADER TRANSCRIPTION 28-OCT-14 4ROD TITLE HUMAN TFIIB-RELATED FACTOR 2 (BRF2) AND TBP BOUND TO TRNAU1 PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR IIIB 50 KDA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TFIIIB50, HTFIIIB50, B-RELATED FACTOR 2, BRF-2, HBRFU; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TATA-BOX-BINDING PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: TATA SEQUENCE-BINDING PROTEIN, TATA-BINDING FACTOR, TATA-BOX COMPND 10 FACTOR, TRANSCRIPTION INITIATION FACTOR TFIID TBP SUBUNIT; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TEMPLATE STRAND; COMPND 14 CHAIN: N; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: NON-TEMPLATE STRAND; COMPND 18 CHAIN: T; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRF2, BRFU, PRO1470; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TBP, GTF2D1, TF2D, TFIID; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 OTHER_DETAILS: OLIGONUCLEOTIDE; SOURCE 20 MOL_ID: 4; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 23 ORGANISM_TAXID: 32630; SOURCE 24 OTHER_DETAILS: OLIGONUCLEOTIDE KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.VANNINI,J.GOUGE,K.SATIA,N.GUTHERTZ REVDAT 2 28-FEB-24 4ROD 1 SEQADV REVDAT 1 30-DEC-15 4ROD 0 JRNL AUTH J.GOUGE,K.SATIA,N.GUTHERTZ,M.WIDYA,A.J.THOMPSON,P.COUSIN, JRNL AUTH 2 O.DERGAI,N.HERNANDEZ,A.VANNINI JRNL TITL REDOX SIGNALING BY THE RNA POLYMERASE III TFIIB-RELATED JRNL TITL 2 FACTOR BRF2. JRNL REF CELL(CAMBRIDGE,MASS.) V. 163 1375 2015 JRNL REFN ISSN 0092-8674 JRNL PMID 26638071 JRNL DOI 10.1016/J.CELL.2015.11.005 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 20221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1039 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.38 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2940 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2360 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2793 REMARK 3 BIN R VALUE (WORKING SET) : 0.2348 REMARK 3 BIN FREE R VALUE : 0.2599 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3798 REMARK 3 NUCLEIC ACID ATOMS : 1122 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46670 REMARK 3 B22 (A**2) : 0.87810 REMARK 3 B33 (A**2) : 0.58850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.481 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5128 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7174 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2116 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 77 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 613 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5128 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 670 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5341 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.85 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.29 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|66 - A|167 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.1460 -0.8257 -4.5822 REMARK 3 T TENSOR REMARK 3 T11: -0.1912 T22: -0.2579 REMARK 3 T33: 0.0641 T12: 0.0274 REMARK 3 T13: 0.1520 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 8.3155 L22: 6.4674 REMARK 3 L33: 5.0899 L12: 0.3333 REMARK 3 L13: -0.6059 L23: -1.6803 REMARK 3 S TENSOR REMARK 3 S11: 0.2168 S12: -0.0698 S13: 0.4441 REMARK 3 S21: 0.3253 S22: -0.1377 S23: 0.5442 REMARK 3 S31: -0.2788 S32: -0.5442 S33: -0.0792 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|168 - A|366 } REMARK 3 ORIGIN FOR THE GROUP (A): 28.5397 -17.0546 -6.1594 REMARK 3 T TENSOR REMARK 3 T11: -0.1768 T22: -0.1359 REMARK 3 T33: 0.1328 T12: 0.0161 REMARK 3 T13: -0.0201 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 1.5519 L22: 2.1651 REMARK 3 L33: 3.8045 L12: -0.2901 REMARK 3 L13: 1.3815 L23: -0.4391 REMARK 3 S TENSOR REMARK 3 S11: 0.1456 S12: 0.0953 S13: 0.1373 REMARK 3 S21: 0.0676 S22: -0.0188 S23: -0.3954 REMARK 3 S31: 0.0123 S32: 0.4802 S33: -0.1269 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|367 - A|378 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.6347 -22.8418 -43.4222 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.1585 REMARK 3 T33: 0.1016 T12: -0.0383 REMARK 3 T13: -0.1141 T23: 0.0905 REMARK 3 L TENSOR REMARK 3 L11: 0.2198 L22: 1.4339 REMARK 3 L33: 0.1528 L12: -0.1401 REMARK 3 L13: 0.1690 L23: 0.3757 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.0924 S13: -0.0190 REMARK 3 S21: -0.0246 S22: -0.0155 S23: -0.0462 REMARK 3 S31: -0.0134 S32: 0.0767 S33: 0.0107 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|379 - A|395 } REMARK 3 ORIGIN FOR THE GROUP (A): -12.9083 -30.2769 -49.2416 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: -0.3002 REMARK 3 T33: -0.0301 T12: 0.1033 REMARK 3 T13: -0.1520 T23: -0.0934 REMARK 3 L TENSOR REMARK 3 L11: 1.2396 L22: 0.0000 REMARK 3 L33: 5.8234 L12: -2.9104 REMARK 3 L13: 2.7832 L23: -2.9104 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: 0.1538 S13: -0.0294 REMARK 3 S21: -0.1113 S22: -0.0039 S23: 0.0824 REMARK 3 S31: -0.0203 S32: -0.0603 S33: 0.0110 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|396 - A|407 } REMARK 3 ORIGIN FOR THE GROUP (A): -24.2561 -42.8384 -34.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: -0.0389 REMARK 3 T33: 0.0643 T12: 0.0650 REMARK 3 T13: 0.0351 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 1.7472 L22: 0.7777 REMARK 3 L33: 0.2804 L12: 2.4327 REMARK 3 L13: -0.6312 L23: -1.5952 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: -0.0960 S13: -0.0586 REMARK 3 S21: 0.1425 S22: 0.0281 S23: 0.0289 REMARK 3 S31: 0.0267 S32: 0.0065 S33: -0.0048 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|158 - B|334 } REMARK 3 ORIGIN FOR THE GROUP (A): -2.0318 -14.0505 -35.1903 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: -0.2399 REMARK 3 T33: 0.0090 T12: 0.1168 REMARK 3 T13: -0.0577 T23: 0.0815 REMARK 3 L TENSOR REMARK 3 L11: 3.6715 L22: 2.3166 REMARK 3 L33: 1.9319 L12: 1.8221 REMARK 3 L13: 1.7605 L23: 1.3226 REMARK 3 S TENSOR REMARK 3 S11: -0.3164 S12: 0.4360 S13: 0.3700 REMARK 3 S21: -0.5442 S22: 0.0886 S23: 0.3085 REMARK 3 S31: -0.2648 S32: 0.2132 S33: 0.2278 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { N|2 - N|5 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.6101 -35.3604 -8.9225 REMARK 3 T TENSOR REMARK 3 T11: 0.2782 T22: -0.1046 REMARK 3 T33: -0.1652 T12: 0.1520 REMARK 3 T13: -0.1520 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 4.5998 L22: 3.1050 REMARK 3 L33: 0.0912 L12: 1.7301 REMARK 3 L13: 2.5955 L23: -0.7808 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.0253 S13: 0.1676 REMARK 3 S21: -0.0543 S22: 0.1622 S23: -0.0882 REMARK 3 S31: -0.2166 S32: 0.3797 S33: -0.1881 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { N|6 - N|14 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.1922 -22.0331 -21.5459 REMARK 3 T TENSOR REMARK 3 T11: -0.1096 T22: -0.2068 REMARK 3 T33: 0.1053 T12: 0.1520 REMARK 3 T13: -0.1520 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 5.7769 L22: 8.2227 REMARK 3 L33: 8.3155 L12: 1.3966 REMARK 3 L13: 1.8391 L23: -2.9104 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: 0.0413 S13: -0.5442 REMARK 3 S21: 0.3559 S22: -0.0796 S23: 0.0937 REMARK 3 S31: 0.5442 S32: -0.0389 S33: 0.0390 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { N|15 - N|28 } REMARK 3 ORIGIN FOR THE GROUP (A): -21.1029 -5.4972 -18.5208 REMARK 3 T TENSOR REMARK 3 T11: -0.0300 T22: -0.2179 REMARK 3 T33: 0.3040 T12: 0.1520 REMARK 3 T13: 0.1520 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 5.4839 L22: 4.6988 REMARK 3 L33: 7.7606 L12: -2.8690 REMARK 3 L13: -2.9104 L23: 2.7864 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: -0.1402 S13: 0.5442 REMARK 3 S21: 0.5442 S22: 0.2806 S23: 0.5442 REMARK 3 S31: -0.0985 S32: -0.5442 S33: -0.2362 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { T|1 - T|4 } REMARK 3 ORIGIN FOR THE GROUP (A): -32.5239 -1.3188 -10.5030 REMARK 3 T TENSOR REMARK 3 T11: -0.1106 T22: 0.1257 REMARK 3 T33: -0.1567 T12: 0.1520 REMARK 3 T13: 0.1520 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 2.9011 L22: 4.1949 REMARK 3 L33: 0.0000 L12: 2.5444 REMARK 3 L13: -2.0750 L23: -0.7854 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.0370 S13: -0.0602 REMARK 3 S21: -0.0085 S22: 0.0520 S23: -0.0670 REMARK 3 S31: 0.2014 S32: -0.0915 S33: -0.0766 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { T|5 - T|14 } REMARK 3 ORIGIN FOR THE GROUP (A): -14.0730 -11.2843 -21.9059 REMARK 3 T TENSOR REMARK 3 T11: -0.0511 T22: -0.1947 REMARK 3 T33: 0.2999 T12: 0.1520 REMARK 3 T13: 0.1520 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 0.7540 L22: 0.3531 REMARK 3 L33: 8.3155 L12: -0.5020 REMARK 3 L13: -2.9104 L23: 1.4972 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: -0.3087 S13: 0.5429 REMARK 3 S21: 0.5442 S22: -0.2078 S23: 0.1807 REMARK 3 S31: -0.5442 S32: -0.1435 S33: 0.1323 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { T|15 - T|28 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.7595 -28.8272 -17.4937 REMARK 3 T TENSOR REMARK 3 T11: -0.0421 T22: -0.2527 REMARK 3 T33: 0.1276 T12: 0.1520 REMARK 3 T13: -0.1336 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 2.5737 L22: 6.5553 REMARK 3 L33: 6.6014 L12: -1.6004 REMARK 3 L13: 1.2589 L23: -1.6669 REMARK 3 S TENSOR REMARK 3 S11: 0.1507 S12: 0.2724 S13: -0.5442 REMARK 3 S21: 0.5442 S22: 0.1255 S23: -0.0487 REMARK 3 S31: 0.5442 S32: 0.5342 S33: -0.2762 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DENSITY BETWEEN THE RESIDUES 365 REMARK 3 AND 374 IS VERY POOR, THE LINKER HAS BEEN BUILT WITH 0 OCCUPANCY REMARK 4 REMARK 4 4ROD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20256 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 2.21200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG 3350, 50-100 MM MGCL2, 2 MM REMARK 280 DTT, PH 7.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.52000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.46700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.68850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.46700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.52000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.68850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, N, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 60 REMARK 465 PRO A 61 REMARK 465 ASN A 62 REMARK 465 GLU A 63 REMARK 465 GLN A 64 REMARK 465 VAL A 65 REMARK 465 THR A 316 REMARK 465 ALA A 317 REMARK 465 GLU A 318 REMARK 465 VAL A 319 REMARK 465 GLU A 320 REMARK 465 THR A 321 REMARK 465 ARG A 322 REMARK 465 GLU A 323 REMARK 465 LYS A 324 REMARK 465 GLU A 325 REMARK 465 PRO A 326 REMARK 465 PRO A 327 REMARK 465 GLY A 328 REMARK 465 TRP A 329 REMARK 465 GLY A 330 REMARK 465 GLN A 331 REMARK 465 GLY A 332 REMARK 465 GLN A 333 REMARK 465 GLY A 334 REMARK 465 GLU A 335 REMARK 465 GLY A 336 REMARK 465 GLU A 337 REMARK 465 VAL A 338 REMARK 465 GLY A 339 REMARK 465 ASN A 340 REMARK 465 ASN A 341 REMARK 465 SER A 342 REMARK 465 LEU A 343 REMARK 465 GLY A 344 REMARK 465 LEU A 345 REMARK 465 PRO A 346 REMARK 465 GLN A 347 REMARK 465 GLY A 348 REMARK 465 LYS A 349 REMARK 465 ARG A 350 REMARK 465 PRO A 351 REMARK 465 ALA A 352 REMARK 465 SER A 353 REMARK 465 PRO A 354 REMARK 465 ALA A 355 REMARK 465 ALA A 408 REMARK 465 ARG A 409 REMARK 465 GLN A 410 REMARK 465 ALA A 411 REMARK 465 ALA A 412 REMARK 465 THR A 413 REMARK 465 SER A 414 REMARK 465 VAL A 415 REMARK 465 PRO A 416 REMARK 465 ASN A 417 REMARK 465 PRO A 418 REMARK 465 PRO A 419 REMARK 465 GLY B 157 REMARK 465 PHE B 335 REMARK 465 ARG B 336 REMARK 465 LYS B 337 REMARK 465 THR B 338 REMARK 465 THR B 339 REMARK 465 DT N 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT N 2 P OP1 OP2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 365 REMARK 475 PRO A 366 REMARK 475 LYS A 367 REMARK 475 ARG A 368 REMARK 475 ILE A 369 REMARK 475 CYS A 370 REMARK 475 PRO A 371 REMARK 475 VAL A 372 REMARK 475 PRO A 373 REMARK 475 PRO A 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT N 12 O3' DT N 12 C3' -0.038 REMARK 500 DT T 11 O3' DT T 11 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT N 4 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC N 6 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG N 7 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT N 9 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC N 10 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC N 25 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG N 26 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC T 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG T 9 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT T 21 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 238 72.01 -152.94 REMARK 500 PHE B 250 78.23 -117.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG T 9 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ROC RELATED DB: PDB REMARK 900 RELATED ID: 4ROE RELATED DB: PDB DBREF 4ROD A 62 419 UNP Q9HAW0 BRF2_HUMAN 62 419 DBREF 4ROD B 159 339 UNP P20226 TBP_HUMAN 159 339 DBREF 4ROD N 1 28 PDB 4ROD 4ROD 1 28 DBREF 4ROD T 1 28 PDB 4ROD 4ROD 1 28 SEQADV 4ROD GLY A 60 UNP Q9HAW0 EXPRESSION TAG SEQADV 4ROD PRO A 61 UNP Q9HAW0 EXPRESSION TAG SEQADV 4ROD GLY B 157 UNP P20226 EXPRESSION TAG SEQADV 4ROD PRO B 158 UNP P20226 EXPRESSION TAG SEQRES 1 A 360 GLY PRO ASN GLU GLN VAL SER ARG SER GLN GLN ARG GLY SEQRES 2 A 360 LEU ARG ARG VAL ARG ASP LEU CYS ARG VAL LEU GLN LEU SEQRES 3 A 360 PRO PRO THR PHE GLU ASP THR ALA VAL ALA TYR TYR GLN SEQRES 4 A 360 GLN ALA TYR ARG HIS SER GLY ILE ARG ALA ALA ARG LEU SEQRES 5 A 360 GLN LYS LYS GLU VAL LEU VAL GLY CYS CYS VAL LEU ILE SEQRES 6 A 360 THR CYS ARG GLN HIS ASN TRP PRO LEU THR MET GLY ALA SEQRES 7 A 360 ILE CYS THR LEU LEU TYR ALA ASP LEU ASP VAL PHE SER SEQRES 8 A 360 SER THR TYR MET GLN ILE VAL LYS LEU LEU GLY LEU ASP SEQRES 9 A 360 VAL PRO SER LEU CYS LEU ALA GLU LEU VAL LYS THR TYR SEQRES 10 A 360 CYS SER SER PHE LYS LEU PHE GLN ALA SER PRO SER VAL SEQRES 11 A 360 PRO ALA LYS TYR VAL GLU ASP LYS GLU LYS MET LEU SER SEQRES 12 A 360 ARG THR MET GLN LEU VAL GLU LEU ALA ASN GLU THR TRP SEQRES 13 A 360 LEU VAL THR GLY ARG HIS PRO LEU PRO VAL ILE THR ALA SEQRES 14 A 360 ALA THR PHE LEU ALA TRP GLN SER LEU GLN PRO ALA ASP SEQRES 15 A 360 ARG LEU SER CYS SER LEU ALA ARG PHE CYS LYS LEU ALA SEQRES 16 A 360 ASN VAL ASP LEU PRO TYR PRO ALA SER SER ARG LEU GLN SEQRES 17 A 360 GLU LEU LEU ALA VAL LEU LEU ARG MET ALA GLU GLN LEU SEQRES 18 A 360 ALA TRP LEU ARG VAL LEU ARG LEU ASP LYS ARG SER VAL SEQRES 19 A 360 VAL LYS HIS ILE GLY ASP LEU LEU GLN HIS ARG GLN SER SEQRES 20 A 360 LEU VAL ARG SER ALA PHE ARG ASP GLY THR ALA GLU VAL SEQRES 21 A 360 GLU THR ARG GLU LYS GLU PRO PRO GLY TRP GLY GLN GLY SEQRES 22 A 360 GLN GLY GLU GLY GLU VAL GLY ASN ASN SER LEU GLY LEU SEQRES 23 A 360 PRO GLN GLY LYS ARG PRO ALA SER PRO ALA LEU LEU LEU SEQRES 24 A 360 PRO PRO CYS MET LEU LYS SER PRO LYS ARG ILE CYS PRO SEQRES 25 A 360 VAL PRO PRO VAL SER THR VAL THR GLY ASP GLU ASN ILE SEQRES 26 A 360 SER ASP SER GLU ILE GLU GLN TYR LEU ARG THR PRO GLN SEQRES 27 A 360 GLU VAL ARG ASP PHE GLN ARG ALA GLN ALA ALA ARG GLN SEQRES 28 A 360 ALA ALA THR SER VAL PRO ASN PRO PRO SEQRES 1 B 183 GLY PRO SER GLY ILE VAL PRO GLN LEU GLN ASN ILE VAL SEQRES 2 B 183 SER THR VAL ASN LEU GLY CYS LYS LEU ASP LEU LYS THR SEQRES 3 B 183 ILE ALA LEU ARG ALA ARG ASN ALA GLU TYR ASN PRO LYS SEQRES 4 B 183 ARG PHE ALA ALA VAL ILE MET ARG ILE ARG GLU PRO ARG SEQRES 5 B 183 THR THR ALA LEU ILE PHE SER SER GLY LYS MET VAL CYS SEQRES 6 B 183 THR GLY ALA LYS SER GLU GLU GLN SER ARG LEU ALA ALA SEQRES 7 B 183 ARG LYS TYR ALA ARG VAL VAL GLN LYS LEU GLY PHE PRO SEQRES 8 B 183 ALA LYS PHE LEU ASP PHE LYS ILE GLN ASN MET VAL GLY SEQRES 9 B 183 SER CYS ASP VAL LYS PHE PRO ILE ARG LEU GLU GLY LEU SEQRES 10 B 183 VAL LEU THR HIS GLN GLN PHE SER SER TYR GLU PRO GLU SEQRES 11 B 183 LEU PHE PRO GLY LEU ILE TYR ARG MET ILE LYS PRO ARG SEQRES 12 B 183 ILE VAL LEU LEU ILE PHE VAL SER GLY LYS VAL VAL LEU SEQRES 13 B 183 THR GLY ALA LYS VAL ARG ALA GLU ILE TYR GLU ALA PHE SEQRES 14 B 183 GLU ASN ILE TYR PRO ILE LEU LYS GLY PHE ARG LYS THR SEQRES 15 B 183 THR SEQRES 1 N 28 DT DT DT DT DG DC DG DA DT DC DC DT DT SEQRES 2 N 28 DA DT DA DT DA DG DC DT DG DC DG DC DG SEQRES 3 N 28 DG DG SEQRES 1 T 28 DC DC DC DG DC DG DC DA DG DC DT DA DT SEQRES 2 T 28 DA DT DA DA DG DG DA DT DC DG DC DA DA SEQRES 3 T 28 DA DA FORMUL 5 HOH *127(H2 O) HELIX 1 1 SER A 66 LEU A 83 1 18 HELIX 2 2 PRO A 86 ARG A 102 1 17 HELIX 3 3 HIS A 103 ALA A 108 1 6 HELIX 4 4 ARG A 110 HIS A 129 1 20 HELIX 5 5 THR A 134 TYR A 143 1 10 HELIX 6 6 ASP A 145 LEU A 160 1 16 HELIX 7 7 CYS A 168 SER A 179 1 12 HELIX 8 8 PRO A 190 VAL A 194 5 5 HELIX 9 9 ASP A 196 THR A 214 1 19 HELIX 10 10 HIS A 221 GLN A 238 1 18 HELIX 11 11 GLN A 238 LEU A 243 1 6 HELIX 12 12 SER A 246 ALA A 254 1 9 HELIX 13 13 PRO A 261 GLU A 278 1 18 HELIX 14 14 LEU A 280 VAL A 285 1 6 HELIX 15 15 VAL A 293 LYS A 295 5 3 HELIX 16 16 HIS A 296 HIS A 303 1 8 HELIX 17 17 HIS A 303 ASP A 314 1 12 HELIX 18 18 SER A 385 GLN A 391 1 7 HELIX 19 19 THR A 395 ALA A 407 1 13 HELIX 20 20 ASP B 179 ALA B 187 1 9 HELIX 21 21 SER B 226 LEU B 244 1 19 HELIX 22 22 ARG B 269 HIS B 277 1 9 HELIX 23 23 VAL B 317 GLY B 334 1 18 SHEET 1 A10 ALA B 190 ASN B 193 0 SHEET 2 A10 PHE B 197 ILE B 204 -1 O ILE B 201 N GLU B 191 SHEET 3 A10 THR B 209 ILE B 213 -1 O ALA B 211 N MET B 202 SHEET 4 A10 LYS B 218 ALA B 224 -1 O THR B 222 N THR B 210 SHEET 5 A10 GLN B 164 ASN B 173 -1 N SER B 170 O CYS B 221 SHEET 6 A10 LEU B 251 ASP B 263 -1 O LEU B 251 N ASN B 173 SHEET 7 A10 LYS B 309 ALA B 315 -1 O LEU B 312 N GLY B 260 SHEET 8 A10 ILE B 300 ILE B 304 -1 N LEU B 303 O VAL B 311 SHEET 9 A10 LEU B 291 MET B 295 -1 N TYR B 293 O LEU B 302 SHEET 10 A10 SER B 281 SER B 282 -1 N SER B 282 O ILE B 292 CISPEP 1 LEU A 363 LYS A 364 0 1.71 CISPEP 2 GLU B 206 PRO B 207 0 -6.76 CISPEP 3 LYS B 297 PRO B 298 0 -2.99 CRYST1 77.040 91.377 102.934 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010944 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009715 0.00000