PDB Short entry for 4ROF HEADER LIGASE 28-OCT-14 4ROF TITLE CRYSTAL STRUCTURE OF WW3 DOMAIN OF ITCH IN COMPLEX WITH TXNIP PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE ITCHY HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 436-474; COMPND 5 SYNONYM: ITCH, ATROPHIN-1-INTERACTING PROTEIN 4, AIP4, NFE2- COMPND 6 ASSOCIATED POLYPEPTIDE 1, NAPP1; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: THIOREDOXIN-INTERACTING PROTEIN; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 327-338; COMPND 13 SYNONYM: THIOREDOXIN-BINDING PROTEIN 2, VITAMIN D3 UP-REGULATED COMPND 14 PROTEIN 1,TXNIP PEPTIDE; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITCH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: CUSTOM; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICSCONSORTIUM, SGC, LIGASE, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 3 20-SEP-23 4ROF 1 SEQADV LINK REVDAT 2 22-NOV-17 4ROF 1 REMARK REVDAT 1 10-DEC-14 4ROF 0 JRNL AUTH Y.LIU,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF WW3 DOMAIN OF ITCH IN COMPLEX WITH JRNL TITL 2 TXNIP PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 6841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 13.800 REMARK 3 FREE R VALUE TEST SET COUNT : 943 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 744 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98000 REMARK 3 B22 (A**2) : 2.32000 REMARK 3 B33 (A**2) : -1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.266 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.984 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 783 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 710 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1074 ; 1.351 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1625 ; 0.819 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 92 ; 6.004 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;22.115 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 108 ;13.959 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.673 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 108 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 893 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): 187 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 376 ; 2.108 ; 2.705 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 374 ; 2.112 ; 2.708 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 466 ; 2.851 ; 4.035 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 472 REMARK 3 ORIGIN FOR THE GROUP (A): 2.770 5.589 12.011 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.0526 REMARK 3 T33: 0.0188 T12: 0.0122 REMARK 3 T13: -0.0092 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 4.5163 L22: 8.2312 REMARK 3 L33: 6.4829 L12: 1.1796 REMARK 3 L13: 2.0404 L23: 2.5225 REMARK 3 S TENSOR REMARK 3 S11: -0.1048 S12: 0.3467 S13: 0.0291 REMARK 3 S21: -0.0102 S22: -0.1702 S23: 0.0044 REMARK 3 S31: -0.3361 S32: -0.1774 S33: 0.2749 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 437 B 472 REMARK 3 ORIGIN FOR THE GROUP (A): -18.994 5.928 28.644 REMARK 3 T TENSOR REMARK 3 T11: 0.0415 T22: 0.0123 REMARK 3 T33: 0.0275 T12: -0.0138 REMARK 3 T13: -0.0118 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 4.4350 L22: 3.0992 REMARK 3 L33: 7.4780 L12: -0.5201 REMARK 3 L13: 0.9956 L23: -0.6787 REMARK 3 S TENSOR REMARK 3 S11: -0.2195 S12: -0.0242 S13: -0.0060 REMARK 3 S21: 0.0431 S22: -0.1043 S23: 0.1687 REMARK 3 S31: -0.2439 S32: 0.2005 S33: 0.3238 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 329 C 338 REMARK 3 RESIDUE RANGE : C 339 C 339 REMARK 3 ORIGIN FOR THE GROUP (A): -3.017 0.808 19.116 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0984 REMARK 3 T33: 0.1230 T12: 0.0180 REMARK 3 T13: 0.0085 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 8.6880 L22: 3.5786 REMARK 3 L33: 8.5239 L12: 2.8936 REMARK 3 L13: 5.3514 L23: 1.0447 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: -0.1404 S13: -0.2449 REMARK 3 S21: 0.0940 S22: 0.0513 S23: -0.1157 REMARK 3 S31: 0.2197 S32: 0.1297 S33: -0.0937 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 329 D 338 REMARK 3 RESIDUE RANGE : D 339 D 339 REMARK 3 ORIGIN FOR THE GROUP (A): -12.270 2.205 21.408 REMARK 3 T TENSOR REMARK 3 T11: 0.2026 T22: 0.1968 REMARK 3 T33: 0.1157 T12: 0.0914 REMARK 3 T13: -0.0328 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 8.4101 L22: 8.7593 REMARK 3 L33: 11.7707 L12: -4.9860 REMARK 3 L13: 4.0570 L23: 5.0632 REMARK 3 S TENSOR REMARK 3 S11: 0.3718 S12: 0.4476 S13: -0.6629 REMARK 3 S21: -0.3069 S22: -0.1001 S23: 0.4463 REMARK 3 S31: 0.2647 S32: 0.5726 S33: -0.2717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DIFFRACTION IMAGES SHOWED MUTLIPLE REMARK 3 PATTERNS AND ICE RINGS. FOR INTEGRATION, DIFFRACTION IMAGES WERE REMARK 3 SEPARATED INTO RANGES (PHI 0 THROUGH 63 DEGREES, 63 THROUGH 180 REMARK 3 DEGREES, RESPECTIVELY). MOSAICITY AND CRYSTAL-TO-DETECTOR REMARK 3 DISTANCE WERE CONSTRAINED DURING INTEGRATION. NO-MERGE-ORIGINAL- REMARK 3 INDEX REFLECTIONS FROM SCALEPACK WERE MERGED WITH AIMLESS REMARK 3 (ONLYMERGE). ARP/WARP WAS USED FOR AUTOMATED MODEL BUILDING AND REMARK 3 MAP IMPROVEMENT. PARROT WAS USED FOR PHASE IMPROVEMENT. REMARK 3 RESTRAINTS FOR THE C-TERMINAL AMIDE PROTECTION OF THE PEPTIDE REMARK 3 LIGAND WERE PREPARED WITH JLIGAND. COOT WAS USED FOR INTERACTIVE REMARK 3 MODEL BUILDING. MODEL GEOMETRY WAS EVALUATED WITH MOLPROBITY. REMARK 4 REMARK 4 4ROF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6898 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.99700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2F21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.2 M SODIUM REMARK 280 ACETATE, 0.1 M SODIUM CACODYLATE PH 5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.08550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.89800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.65600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.89800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.08550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.65600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 428 REMARK 465 ARG A 429 REMARK 465 ARG A 430 REMARK 465 ALA A 431 REMARK 465 SER A 432 REMARK 465 VAL A 433 REMARK 465 GLU A 434 REMARK 465 LEU A 435 REMARK 465 PRO A 436 REMARK 465 GLY A 473 REMARK 465 GLN A 474 REMARK 465 GLY B 428 REMARK 465 ARG B 429 REMARK 465 ARG B 430 REMARK 465 ALA B 431 REMARK 465 SER B 432 REMARK 465 VAL B 433 REMARK 465 GLU B 434 REMARK 465 LEU B 435 REMARK 465 PRO B 436 REMARK 465 GLY B 473 REMARK 465 GLN B 474 REMARK 465 ACE C 326 REMARK 465 THR C 327 REMARK 465 PRO C 328 REMARK 465 ACE D 326 REMARK 465 THR D 327 REMARK 465 PRO D 328 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 437 CG CD1 CD2 REMARK 470 LEU B 437 CG CD1 CD2 REMARK 470 GLU C 329 CG CD OE1 OE2 REMARK 470 GLU D 329 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 468 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ROH RELATED DB: PDB REMARK 900 RELATED ID: 4ROI RELATED DB: PDB REMARK 900 RELATED ID: 4ROJ RELATED DB: PDB DBREF 4ROF A 436 474 UNP Q96J02 ITCH_HUMAN 436 474 DBREF 4ROF B 436 474 UNP Q96J02 ITCH_HUMAN 436 474 DBREF 4ROF C 327 338 UNP Q9H3M7 TXNIP_HUMAN 327 338 DBREF 4ROF D 327 338 UNP Q9H3M7 TXNIP_HUMAN 327 338 SEQADV 4ROF GLY A 428 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF ARG A 429 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF ARG A 430 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF ALA A 431 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF SER A 432 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF VAL A 433 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF GLU A 434 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF LEU A 435 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF GLY B 428 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF ARG B 429 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF ARG B 430 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF ALA B 431 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF SER B 432 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF VAL B 433 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF GLU B 434 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF LEU B 435 UNP Q96J02 EXPRESSION TAG SEQADV 4ROF ACE C 326 UNP Q9H3M7 ACETYLATION SEQADV 4ROF NH2 C 339 UNP Q9H3M7 AMIDATION SEQADV 4ROF ACE D 326 UNP Q9H3M7 ACETYLATION SEQADV 4ROF NH2 D 339 UNP Q9H3M7 AMIDATION SEQRES 1 A 47 GLY ARG ARG ALA SER VAL GLU LEU PRO LEU GLY PRO LEU SEQRES 2 A 47 PRO PRO GLY TRP GLU LYS ARG THR ASP SER ASN GLY ARG SEQRES 3 A 47 VAL TYR PHE VAL ASN HIS ASN THR ARG ILE THR GLN TRP SEQRES 4 A 47 GLU ASP PRO ARG SER GLN GLY GLN SEQRES 1 B 47 GLY ARG ARG ALA SER VAL GLU LEU PRO LEU GLY PRO LEU SEQRES 2 B 47 PRO PRO GLY TRP GLU LYS ARG THR ASP SER ASN GLY ARG SEQRES 3 B 47 VAL TYR PHE VAL ASN HIS ASN THR ARG ILE THR GLN TRP SEQRES 4 B 47 GLU ASP PRO ARG SER GLN GLY GLN SEQRES 1 C 14 ACE THR PRO GLU ALA PRO PRO CYS TYR MET ASP VAL ILE SEQRES 2 C 14 NH2 SEQRES 1 D 14 ACE THR PRO GLU ALA PRO PRO CYS TYR MET ASP VAL ILE SEQRES 2 D 14 NH2 HET NH2 C 339 1 HET NH2 D 339 1 HETNAM NH2 AMINO GROUP FORMUL 3 NH2 2(H2 N) FORMUL 5 HOH *10(H2 O) HELIX 1 1 ASP A 468 GLN A 472 5 5 HELIX 2 2 ASP B 468 GLN B 472 5 5 HELIX 3 3 CYS C 333 ILE C 338 1 6 HELIX 4 4 CYS D 333 ILE D 338 1 6 SHEET 1 A 3 TRP A 444 THR A 448 0 SHEET 2 A 3 VAL A 454 ASN A 458 -1 O TYR A 455 N ARG A 447 SHEET 3 A 3 ILE A 463 GLN A 465 -1 O ILE A 463 N ASN A 458 SHEET 1 B 3 TRP B 444 THR B 448 0 SHEET 2 B 3 VAL B 454 ASN B 458 -1 O VAL B 457 N GLU B 445 SHEET 3 B 3 ILE B 463 GLN B 465 -1 O ILE B 463 N ASN B 458 SSBOND 1 CYS C 333 CYS D 333 1555 1555 2.05 LINK C ILE C 338 N NH2 C 339 1555 1555 1.34 LINK C ILE D 338 N NH2 D 339 1555 1555 1.33 CRYST1 30.171 55.312 59.796 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016724 0.00000