PDB Short entry for 4RPI HEADER TRANSFERASE 30-OCT-14 4RPI TITLE CRYSTAL STRUCTURE OF NICOTINATE MONONUCLEOTIDE ADENYLYLTRANSFERASE TITLE 2 FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DEAMIDO-NAD(+) DIPHOSPHORYLASE, DEAMIDO-NAD(+) COMPND 5 PYROPHOSPHORYLASE, NICOTINATE MONONUCLEOTIDE ADENYLYLTRANSFERASE; COMPND 6 EC: 2.7.7.18; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: NADD, HKBS1_2563; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PODC29 KEYWDS NADD, NAD BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.RODIONOVA,H.ZUCCOLA,L.SORCI,A.E.ALESHIN,M.KAZANOV,E.SERGIENKO, AUTHOR 2 E.RUBIN,C.LOCHER,A.OSTERMAN REVDAT 3 20-DEC-17 4RPI 1 JRNL REVDAT 2 22-NOV-17 4RPI 1 REMARK REVDAT 1 28-JAN-15 4RPI 0 JRNL AUTH I.A.RODIONOVA,H.J.ZUCCOLA,L.SORCI,A.E.ALESHIN,M.D.KAZANOV, JRNL AUTH 2 C.T.MA,E.SERGIENKO,E.J.RUBIN,C.P.LOCHER,A.L.OSTERMAN JRNL TITL MYCOBACTERIAL NICOTINATE MONONUCLEOTIDE ADENYLYLTRANSFERASE: JRNL TITL 2 STRUCTURE, MECHANISM, AND IMPLICATIONS FOR DRUG DISCOVERY. JRNL REF J. BIOL. CHEM. V. 290 7693 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25631047 JRNL DOI 10.1074/JBC.M114.628016 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 32648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8340 - 7.1388 0.93 2112 142 0.1820 0.1850 REMARK 3 2 7.1388 - 5.6749 0.93 2132 135 0.2177 0.2105 REMARK 3 3 5.6749 - 4.9601 0.96 2173 143 0.1912 0.2350 REMARK 3 4 4.9601 - 4.5078 0.98 2228 147 0.1607 0.2003 REMARK 3 5 4.5078 - 4.1853 0.92 2120 137 0.1663 0.2000 REMARK 3 6 4.1853 - 3.9389 0.96 2199 142 0.1925 0.2092 REMARK 3 7 3.9389 - 3.7419 0.96 2192 140 0.2045 0.2368 REMARK 3 8 3.7419 - 3.5792 0.96 2197 142 0.2228 0.2534 REMARK 3 9 3.5792 - 3.4416 0.97 2197 145 0.2196 0.2541 REMARK 3 10 3.4416 - 3.3229 0.91 2097 132 0.2231 0.2760 REMARK 3 11 3.3229 - 3.2191 0.95 2147 146 0.2367 0.2873 REMARK 3 12 3.2191 - 3.1271 0.95 2163 141 0.2519 0.2911 REMARK 3 13 3.1271 - 3.0449 0.95 2141 141 0.2578 0.3244 REMARK 3 14 3.0449 - 2.9706 0.95 2202 142 0.2714 0.3358 REMARK 3 15 2.9706 - 2.9031 0.97 2175 143 0.2692 0.2792 REMARK 3 16 2.9031 - 2.8414 0.96 2228 142 0.2723 0.3317 REMARK 3 17 2.8414 - 2.7846 0.95 2177 140 0.2928 0.2899 REMARK 3 18 2.7846 - 2.7321 0.89 2014 135 0.2827 0.3072 REMARK 3 19 2.7321 - 2.6833 0.94 2154 139 0.2947 0.3238 REMARK 3 20 2.6833 - 2.6378 0.94 2141 137 0.3141 0.3685 REMARK 3 21 2.6378 - 2.5953 0.96 2195 143 0.3002 0.3002 REMARK 3 22 2.5953 - 2.5554 0.95 2145 142 0.2934 0.3327 REMARK 3 23 2.5554 - 2.5178 0.96 2204 138 0.3196 0.3082 REMARK 3 24 2.5178 - 2.4823 0.96 2196 138 0.3213 0.3615 REMARK 3 25 2.4823 - 2.4488 0.97 2191 143 0.3328 0.3439 REMARK 3 26 2.4488 - 2.4170 0.97 2264 151 0.3395 0.3730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6222 REMARK 3 ANGLE : 0.882 8448 REMARK 3 CHIRALITY : 0.035 942 REMARK 3 PLANARITY : 0.006 1085 REMARK 3 DIHEDRAL : 12.186 2263 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 160 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.417 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7 MG/ML PROTEIN IN 150 MM SODIUM REMARK 280 CHLORIDE, 20 MM TRIS, PH 8.0, 2.5% V/V DMSO, 0.7 MM TCEP MIXED 1: REMARK 280 1 WITH 25% PEG3350, 0.1 M HEPES, 0.2 M MAGNESIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.49000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.49000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 GLY A 3 REMARK 465 PRO A 44 REMARK 465 TRP A 45 REMARK 465 GLN A 46 REMARK 465 LYS A 47 REMARK 465 ALA A 202 REMARK 465 CYS A 203 REMARK 465 ASP A 204 REMARK 465 ALA A 205 REMARK 465 GLY A 206 REMARK 465 ALA A 207 REMARK 465 ARG A 208 REMARK 465 SER A 209 REMARK 465 THR A 210 REMARK 465 THR A 211 REMARK 465 SER A 212 REMARK 465 LEU A 213 REMARK 465 ALA A 214 REMARK 465 ALA A 215 REMARK 465 GLY A 216 REMARK 465 ASN A 217 REMARK 465 GLY A 218 REMARK 465 LEU A 219 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 GLY B 3 REMARK 465 TRP B 45 REMARK 465 GLN B 46 REMARK 465 LYS B 47 REMARK 465 GLY B 201 REMARK 465 ALA B 202 REMARK 465 CYS B 203 REMARK 465 ASP B 204 REMARK 465 ALA B 205 REMARK 465 GLY B 206 REMARK 465 ALA B 207 REMARK 465 ARG B 208 REMARK 465 SER B 209 REMARK 465 THR B 210 REMARK 465 THR B 211 REMARK 465 SER B 212 REMARK 465 LEU B 213 REMARK 465 ALA B 214 REMARK 465 ALA B 215 REMARK 465 GLY B 216 REMARK 465 ASN B 217 REMARK 465 GLY B 218 REMARK 465 LEU B 219 REMARK 465 GLY C -3 REMARK 465 ALA C -2 REMARK 465 MET C -1 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 HIS C 2 REMARK 465 GLY C 3 REMARK 465 TRP C 45 REMARK 465 GLN C 46 REMARK 465 LYS C 47 REMARK 465 GLY C 48 REMARK 465 ARG C 49 REMARK 465 GLY C 201 REMARK 465 ALA C 202 REMARK 465 CYS C 203 REMARK 465 ASP C 204 REMARK 465 ALA C 205 REMARK 465 GLY C 206 REMARK 465 ALA C 207 REMARK 465 ARG C 208 REMARK 465 SER C 209 REMARK 465 THR C 210 REMARK 465 THR C 211 REMARK 465 SER C 212 REMARK 465 LEU C 213 REMARK 465 ALA C 214 REMARK 465 ALA C 215 REMARK 465 GLY C 216 REMARK 465 ASN C 217 REMARK 465 GLY C 218 REMARK 465 LEU C 219 REMARK 465 GLY D -3 REMARK 465 ALA D -2 REMARK 465 MET D -1 REMARK 465 GLY D 0 REMARK 465 MET D 1 REMARK 465 HIS D 2 REMARK 465 GLY D 3 REMARK 465 TRP D 45 REMARK 465 GLN D 46 REMARK 465 LYS D 47 REMARK 465 ALA D 202 REMARK 465 CYS D 203 REMARK 465 ASP D 204 REMARK 465 ALA D 205 REMARK 465 GLY D 206 REMARK 465 ALA D 207 REMARK 465 ARG D 208 REMARK 465 SER D 209 REMARK 465 THR D 210 REMARK 465 THR D 211 REMARK 465 SER D 212 REMARK 465 LEU D 213 REMARK 465 ALA D 214 REMARK 465 ALA D 215 REMARK 465 GLY D 216 REMARK 465 ASN D 217 REMARK 465 GLY D 218 REMARK 465 LEU D 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 140 -174.80 -67.49 REMARK 500 LYS B 153 -136.37 58.79 REMARK 500 LYS C 153 -134.17 58.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS D 304 DBREF 4RPI A 9 219 UNP W6GSY1 W6GSY1_MYCTX 1 211 DBREF 4RPI B 9 219 UNP W6GSY1 W6GSY1_MYCTX 1 211 DBREF 4RPI C 9 219 UNP W6GSY1 W6GSY1_MYCTX 1 211 DBREF 4RPI D 9 219 UNP W6GSY1 W6GSY1_MYCTX 1 211 SEQADV 4RPI GLY A -3 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ALA A -2 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI MET A -1 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY A 0 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI MET A 1 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI HIS A 2 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY A 3 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ARG A 4 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ARG A 5 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI LEU A 6 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY A 7 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI VAL A 8 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ALA A 117 UNP W6GSY1 TRP 109 ENGINEERED MUTATION SEQADV 4RPI GLY B -3 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ALA B -2 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI MET B -1 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY B 0 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI MET B 1 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI HIS B 2 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY B 3 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ARG B 4 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ARG B 5 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI LEU B 6 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY B 7 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI VAL B 8 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ALA B 117 UNP W6GSY1 TRP 109 ENGINEERED MUTATION SEQADV 4RPI GLY C -3 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ALA C -2 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI MET C -1 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY C 0 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI MET C 1 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI HIS C 2 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY C 3 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ARG C 4 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ARG C 5 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI LEU C 6 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY C 7 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI VAL C 8 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ALA C 117 UNP W6GSY1 TRP 109 ENGINEERED MUTATION SEQADV 4RPI GLY D -3 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ALA D -2 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI MET D -1 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY D 0 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI MET D 1 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI HIS D 2 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY D 3 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ARG D 4 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ARG D 5 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI LEU D 6 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI GLY D 7 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI VAL D 8 UNP W6GSY1 EXPRESSION TAG SEQADV 4RPI ALA D 117 UNP W6GSY1 TRP 109 ENGINEERED MUTATION SEQRES 1 A 223 GLY ALA MET GLY MET HIS GLY ARG ARG LEU GLY VAL MET SEQRES 2 A 223 GLY GLY THR PHE ASP PRO ILE HIS TYR GLY HIS LEU VAL SEQRES 3 A 223 ALA ALA SER GLU VAL ALA ASP LEU PHE ASP LEU ASP GLU SEQRES 4 A 223 VAL VAL PHE VAL PRO SER GLY GLN PRO TRP GLN LYS GLY SEQRES 5 A 223 ARG GLN VAL SER ALA ALA GLU HIS ARG TYR LEU MET THR SEQRES 6 A 223 VAL ILE ALA THR ALA SER ASN PRO ARG PHE SER VAL SER SEQRES 7 A 223 ARG VAL ASP ILE ASP ARG GLY GLY PRO THR TYR THR LYS SEQRES 8 A 223 ASP THR LEU ALA ASP LEU HIS ALA LEU HIS PRO ASP SER SEQRES 9 A 223 GLU LEU TYR PHE THR THR GLY ALA ASP ALA LEU ALA SER SEQRES 10 A 223 ILE MET SER ALA GLN GLY TRP GLU GLU LEU PHE GLU LEU SEQRES 11 A 223 ALA ARG PHE VAL GLY VAL SER ARG PRO GLY TYR GLU LEU SEQRES 12 A 223 ARG ASN GLU HIS ILE THR SER LEU LEU GLY GLN LEU ALA SEQRES 13 A 223 LYS ASP ALA LEU THR LEU VAL GLU ILE PRO ALA LEU ALA SEQRES 14 A 223 ILE SER SER THR ASP CYS ARG GLN ARG ALA GLU GLN SER SEQRES 15 A 223 ARG PRO LEU TRP TYR LEU MET PRO ASP GLY VAL VAL GLN SEQRES 16 A 223 TYR VAL SER LYS CYS ARG LEU TYR CYS GLY ALA CYS ASP SEQRES 17 A 223 ALA GLY ALA ARG SER THR THR SER LEU ALA ALA GLY ASN SEQRES 18 A 223 GLY LEU SEQRES 1 B 223 GLY ALA MET GLY MET HIS GLY ARG ARG LEU GLY VAL MET SEQRES 2 B 223 GLY GLY THR PHE ASP PRO ILE HIS TYR GLY HIS LEU VAL SEQRES 3 B 223 ALA ALA SER GLU VAL ALA ASP LEU PHE ASP LEU ASP GLU SEQRES 4 B 223 VAL VAL PHE VAL PRO SER GLY GLN PRO TRP GLN LYS GLY SEQRES 5 B 223 ARG GLN VAL SER ALA ALA GLU HIS ARG TYR LEU MET THR SEQRES 6 B 223 VAL ILE ALA THR ALA SER ASN PRO ARG PHE SER VAL SER SEQRES 7 B 223 ARG VAL ASP ILE ASP ARG GLY GLY PRO THR TYR THR LYS SEQRES 8 B 223 ASP THR LEU ALA ASP LEU HIS ALA LEU HIS PRO ASP SER SEQRES 9 B 223 GLU LEU TYR PHE THR THR GLY ALA ASP ALA LEU ALA SER SEQRES 10 B 223 ILE MET SER ALA GLN GLY TRP GLU GLU LEU PHE GLU LEU SEQRES 11 B 223 ALA ARG PHE VAL GLY VAL SER ARG PRO GLY TYR GLU LEU SEQRES 12 B 223 ARG ASN GLU HIS ILE THR SER LEU LEU GLY GLN LEU ALA SEQRES 13 B 223 LYS ASP ALA LEU THR LEU VAL GLU ILE PRO ALA LEU ALA SEQRES 14 B 223 ILE SER SER THR ASP CYS ARG GLN ARG ALA GLU GLN SER SEQRES 15 B 223 ARG PRO LEU TRP TYR LEU MET PRO ASP GLY VAL VAL GLN SEQRES 16 B 223 TYR VAL SER LYS CYS ARG LEU TYR CYS GLY ALA CYS ASP SEQRES 17 B 223 ALA GLY ALA ARG SER THR THR SER LEU ALA ALA GLY ASN SEQRES 18 B 223 GLY LEU SEQRES 1 C 223 GLY ALA MET GLY MET HIS GLY ARG ARG LEU GLY VAL MET SEQRES 2 C 223 GLY GLY THR PHE ASP PRO ILE HIS TYR GLY HIS LEU VAL SEQRES 3 C 223 ALA ALA SER GLU VAL ALA ASP LEU PHE ASP LEU ASP GLU SEQRES 4 C 223 VAL VAL PHE VAL PRO SER GLY GLN PRO TRP GLN LYS GLY SEQRES 5 C 223 ARG GLN VAL SER ALA ALA GLU HIS ARG TYR LEU MET THR SEQRES 6 C 223 VAL ILE ALA THR ALA SER ASN PRO ARG PHE SER VAL SER SEQRES 7 C 223 ARG VAL ASP ILE ASP ARG GLY GLY PRO THR TYR THR LYS SEQRES 8 C 223 ASP THR LEU ALA ASP LEU HIS ALA LEU HIS PRO ASP SER SEQRES 9 C 223 GLU LEU TYR PHE THR THR GLY ALA ASP ALA LEU ALA SER SEQRES 10 C 223 ILE MET SER ALA GLN GLY TRP GLU GLU LEU PHE GLU LEU SEQRES 11 C 223 ALA ARG PHE VAL GLY VAL SER ARG PRO GLY TYR GLU LEU SEQRES 12 C 223 ARG ASN GLU HIS ILE THR SER LEU LEU GLY GLN LEU ALA SEQRES 13 C 223 LYS ASP ALA LEU THR LEU VAL GLU ILE PRO ALA LEU ALA SEQRES 14 C 223 ILE SER SER THR ASP CYS ARG GLN ARG ALA GLU GLN SER SEQRES 15 C 223 ARG PRO LEU TRP TYR LEU MET PRO ASP GLY VAL VAL GLN SEQRES 16 C 223 TYR VAL SER LYS CYS ARG LEU TYR CYS GLY ALA CYS ASP SEQRES 17 C 223 ALA GLY ALA ARG SER THR THR SER LEU ALA ALA GLY ASN SEQRES 18 C 223 GLY LEU SEQRES 1 D 223 GLY ALA MET GLY MET HIS GLY ARG ARG LEU GLY VAL MET SEQRES 2 D 223 GLY GLY THR PHE ASP PRO ILE HIS TYR GLY HIS LEU VAL SEQRES 3 D 223 ALA ALA SER GLU VAL ALA ASP LEU PHE ASP LEU ASP GLU SEQRES 4 D 223 VAL VAL PHE VAL PRO SER GLY GLN PRO TRP GLN LYS GLY SEQRES 5 D 223 ARG GLN VAL SER ALA ALA GLU HIS ARG TYR LEU MET THR SEQRES 6 D 223 VAL ILE ALA THR ALA SER ASN PRO ARG PHE SER VAL SER SEQRES 7 D 223 ARG VAL ASP ILE ASP ARG GLY GLY PRO THR TYR THR LYS SEQRES 8 D 223 ASP THR LEU ALA ASP LEU HIS ALA LEU HIS PRO ASP SER SEQRES 9 D 223 GLU LEU TYR PHE THR THR GLY ALA ASP ALA LEU ALA SER SEQRES 10 D 223 ILE MET SER ALA GLN GLY TRP GLU GLU LEU PHE GLU LEU SEQRES 11 D 223 ALA ARG PHE VAL GLY VAL SER ARG PRO GLY TYR GLU LEU SEQRES 12 D 223 ARG ASN GLU HIS ILE THR SER LEU LEU GLY GLN LEU ALA SEQRES 13 D 223 LYS ASP ALA LEU THR LEU VAL GLU ILE PRO ALA LEU ALA SEQRES 14 D 223 ILE SER SER THR ASP CYS ARG GLN ARG ALA GLU GLN SER SEQRES 15 D 223 ARG PRO LEU TRP TYR LEU MET PRO ASP GLY VAL VAL GLN SEQRES 16 D 223 TYR VAL SER LYS CYS ARG LEU TYR CYS GLY ALA CYS ASP SEQRES 17 D 223 ALA GLY ALA ARG SER THR THR SER LEU ALA ALA GLY ASN SEQRES 18 D 223 GLY LEU HET EPE A 301 15 HET DMS A 302 4 HET DMS B 301 4 HET DMS B 302 4 HET EPE C 301 15 HET DMS C 302 4 HET DMS C 303 4 HET EPE D 301 15 HET EPE D 302 15 HET DMS D 303 4 HET DMS D 304 4 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETSYN EPE HEPES FORMUL 5 EPE 4(C8 H18 N2 O4 S) FORMUL 6 DMS 7(C2 H6 O S) FORMUL 16 HOH *168(H2 O) HELIX 1 1 HIS A 17 PHE A 31 1 15 HELIX 2 2 ALA A 53 ALA A 66 1 14 HELIX 3 3 ARG A 75 GLY A 81 1 7 HELIX 4 4 TYR A 85 HIS A 97 1 13 HELIX 5 5 ALA A 108 SER A 116 1 9 HELIX 6 6 GLY A 119 PHE A 124 1 6 HELIX 7 7 ARG A 140 LYS A 153 1 14 HELIX 8 8 PRO A 162 ILE A 166 5 5 HELIX 9 9 SER A 167 GLN A 177 1 11 HELIX 10 10 PRO A 186 CYS A 196 1 11 HELIX 11 11 HIS B 17 PHE B 31 1 15 HELIX 12 12 ALA B 53 ALA B 66 1 14 HELIX 13 13 ARG B 75 GLY B 81 1 7 HELIX 14 14 TYR B 85 HIS B 97 1 13 HELIX 15 15 ALA B 108 SER B 116 1 9 HELIX 16 16 GLY B 119 PHE B 124 1 6 HELIX 17 17 GLY B 136 ASN B 141 1 6 HELIX 18 18 ASN B 141 LYS B 153 1 13 HELIX 19 19 PRO B 162 ILE B 166 5 5 HELIX 20 20 SER B 167 GLN B 177 1 11 HELIX 21 21 PRO B 186 ARG B 197 1 12 HELIX 22 22 HIS C 17 PHE C 31 1 15 HELIX 23 23 ALA C 53 ALA C 66 1 14 HELIX 24 24 ARG C 75 GLY C 81 1 7 HELIX 25 25 TYR C 85 HIS C 97 1 13 HELIX 26 26 ALA C 108 SER C 116 1 9 HELIX 27 27 GLY C 119 GLU C 125 1 7 HELIX 28 28 GLY C 136 ASN C 141 1 6 HELIX 29 29 ASN C 141 LYS C 153 1 13 HELIX 30 30 PRO C 162 ILE C 166 5 5 HELIX 31 31 SER C 167 GLN C 177 1 11 HELIX 32 32 PRO C 186 CYS C 196 1 11 HELIX 33 33 HIS D 17 PHE D 31 1 15 HELIX 34 34 ALA D 53 ALA D 66 1 14 HELIX 35 35 ARG D 75 GLY D 81 1 7 HELIX 36 36 TYR D 85 HIS D 97 1 13 HELIX 37 37 ALA D 108 SER D 116 1 9 HELIX 38 38 GLU D 122 LEU D 126 5 5 HELIX 39 39 ARG D 140 LYS D 153 1 14 HELIX 40 40 PRO D 162 ILE D 166 5 5 HELIX 41 41 SER D 167 GLN D 177 1 11 HELIX 42 42 PRO D 186 ARG D 197 1 12 SHEET 1 A 6 PHE A 71 VAL A 73 0 SHEET 2 A 6 GLU A 35 PRO A 40 1 N PHE A 38 O SER A 72 SHEET 3 A 6 ARG A 5 GLY A 11 1 N GLY A 7 O GLU A 35 SHEET 4 A 6 GLU A 101 GLY A 107 1 O THR A 105 N VAL A 8 SHEET 5 A 6 ARG A 128 SER A 133 1 O ARG A 128 N LEU A 102 SHEET 6 A 6 LEU A 156 GLU A 160 1 O THR A 157 N GLY A 131 SHEET 1 B 6 PHE B 71 VAL B 73 0 SHEET 2 B 6 GLU B 35 PRO B 40 1 N PHE B 38 O SER B 72 SHEET 3 B 6 ARG B 5 GLY B 11 1 N GLY B 7 O VAL B 37 SHEET 4 B 6 GLU B 101 GLY B 107 1 O THR B 105 N VAL B 8 SHEET 5 B 6 ARG B 128 SER B 133 1 O ARG B 128 N LEU B 102 SHEET 6 B 6 LEU B 156 GLU B 160 1 O VAL B 159 N GLY B 131 SHEET 1 C 6 PHE C 71 VAL C 73 0 SHEET 2 C 6 GLU C 35 PRO C 40 1 N PHE C 38 O SER C 72 SHEET 3 C 6 ARG C 5 GLY C 11 1 N GLY C 7 O VAL C 37 SHEET 4 C 6 GLU C 101 GLY C 107 1 O THR C 105 N VAL C 8 SHEET 5 C 6 ARG C 128 SER C 133 1 O ARG C 128 N LEU C 102 SHEET 6 C 6 LEU C 156 GLU C 160 1 O THR C 157 N GLY C 131 SHEET 1 D 6 PHE D 71 VAL D 73 0 SHEET 2 D 6 GLU D 35 PRO D 40 1 N PHE D 38 O SER D 72 SHEET 3 D 6 ARG D 5 GLY D 11 1 N GLY D 7 O VAL D 37 SHEET 4 D 6 GLU D 101 GLY D 107 1 O THR D 105 N VAL D 8 SHEET 5 D 6 ARG D 128 SER D 133 1 O VAL D 130 N PHE D 104 SHEET 6 D 6 LEU D 156 GLU D 160 1 O THR D 157 N GLY D 131 CISPEP 1 ASP A 14 PRO A 15 0 0.20 CISPEP 2 ASP B 14 PRO B 15 0 -0.26 CISPEP 3 ASP C 14 PRO C 15 0 -0.45 CISPEP 4 ASP D 14 PRO D 15 0 0.56 SITE 1 AC1 9 TRP A 182 TYR A 183 ASP A 187 HOH A 402 SITE 2 AC1 9 HOH A 419 HOH A 430 SER C 67 ASN C 68 SITE 3 AC1 9 ARG C 70 SITE 1 AC2 3 TYR A 58 SER A 72 VAL A 73 SITE 1 AC3 3 TYR B 58 SER B 72 VAL B 73 SITE 1 AC4 6 HOH A 423 ARG B 140 ASN B 141 GLU B 142 SITE 2 AC4 6 HIS B 143 ILE B 144 SITE 1 AC5 8 SER A 67 ASN A 68 PRO A 69 TRP C 182 SITE 2 AC5 8 TYR C 183 ASP C 187 HOH C 406 HOH C 445 SITE 1 AC6 4 HOH B 403 TYR C 58 SER C 72 VAL C 73 SITE 1 AC7 5 ARG C 140 ASN C 141 HIS C 143 ILE C 144 SITE 2 AC7 5 HOH D 417 SITE 1 AC8 9 TRP B 182 TYR B 183 ASP B 187 SER D 67 SITE 2 AC8 9 ASN D 68 PRO D 69 ARG D 70 HOH D 405 SITE 3 AC8 9 HOH D 423 SITE 1 AC9 7 SER B 67 ASN B 68 ARG B 70 TRP D 182 SITE 2 AC9 7 TYR D 183 ASP D 187 HOH D 411 SITE 1 BC1 2 SER D 72 VAL D 73 SITE 1 BC2 2 TRP D 182 GLN D 191 CRYST1 48.980 124.130 140.350 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007125 0.00000