PDB Short entry for 4RQF HEADER LIGASE/RNA 03-NOV-14 4RQF TITLE HUMAN SERYL-TRNA SYNTHETASE DIMER COMPLEXED WITH ONE MOLECULE OF TITLE 2 TRNASEC COMPND MOL_ID: 1; COMPND 2 MOLECULE: SELENOCYSTEINE TRNA; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SERINE--TRNA LIGASE, CYTOPLASMIC; COMPND 8 CHAIN: A, B; COMPND 9 SYNONYM: SERYL-TRNA SYNTHETASE, SERRS, SERYL-TRNA(SER/SEC) COMPND 10 SYNTHETASE; COMPND 11 EC: 6.1.1.11; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: IN VITRO SYNTHESIS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: SARS, SERS; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET20B(+) KEYWDS AMINOACYL-TRNA SYNTHETASE, CLASSII AARS, AMINOACYLATION, SERINE, KEYWDS 2 CYTOSOL, LIGASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.XIE,C.WANG,Y.GUO,Q.TIAN,Q.JIA REVDAT 4 08-NOV-23 4RQF 1 REMARK REVDAT 3 24-AUG-22 4RQF 1 JRNL REMARK SEQADV REVDAT 2 11-NOV-15 4RQF 1 REMARK REVDAT 1 04-NOV-15 4RQF 0 JRNL AUTH C.WANG,Y.GUO,Q.TIAN,Q.JIA,Y.GAO,Q.ZHANG,C.ZHOU,W.XIE JRNL TITL SERRS-TRNASEC COMPLEX STRUCTURES REVEAL MECHANISM OF THE JRNL TITL 2 FIRST STEP IN SELENOCYSTEINE BIOSYNTHESIS. JRNL REF NUCLEIC ACIDS RES. V. 43 10534 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26433229 JRNL DOI 10.1093/NAR/GKV996 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 19707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6271 - 6.6905 0.94 2764 121 0.2332 0.2793 REMARK 3 2 6.6905 - 5.3152 0.99 2764 154 0.2649 0.3466 REMARK 3 3 5.3152 - 4.6447 1.00 2744 131 0.2406 0.2898 REMARK 3 4 4.6447 - 4.2207 1.00 2684 177 0.2542 0.3270 REMARK 3 5 4.2207 - 3.9185 1.00 2703 149 0.2624 0.3207 REMARK 3 6 3.9185 - 3.6877 1.00 2727 135 0.2897 0.3393 REMARK 3 7 3.6877 - 3.5030 0.86 2313 141 0.3077 0.3587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 115.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8918 REMARK 3 ANGLE : 1.238 12381 REMARK 3 CHIRALITY : 0.073 1432 REMARK 3 PLANARITY : 0.006 1363 REMARK 3 DIHEDRAL : 15.377 3499 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19748 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.503 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.95600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4L87, 3A3A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18%(M/V) PEG3350, 0.1M NACL, 0.1M TRIS REMARK 280 -HCL (PH8.0), 0.1M SODIUM MALONATE PH7.0., VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 80.18850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.44700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 80.18850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.44700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G C 1 REMARK 465 G C 2 REMARK 465 C C 3 REMARK 465 C C 4 REMARK 465 G C 30 REMARK 465 G C 31 REMARK 465 C C 32 REMARK 465 U C 33 REMARK 465 U C 34 REMARK 465 C C 35 REMARK 465 A C 36 REMARK 465 A C 37 REMARK 465 A C 38 REMARK 465 C C 39 REMARK 465 C C 40 REMARK 465 U C 41 REMARK 465 G C 42 REMARK 465 U C 43 REMARK 465 C C 68 REMARK 465 G C 69 REMARK 465 G C 70 REMARK 465 G C 71 REMARK 465 C C 72 REMARK 465 G C 73 REMARK 465 C C 74 REMARK 465 C C 75 REMARK 465 A C 76 REMARK 465 MET A 1 REMARK 465 GLY A 65 REMARK 465 GLU A 66 REMARK 465 LYS A 67 REMARK 465 MET A 68 REMARK 465 LYS A 69 REMARK 465 LYS A 70 REMARK 465 LYS A 71 REMARK 465 GLU A 72 REMARK 465 PRO A 73 REMARK 465 VAL A 74 REMARK 465 GLY A 75 REMARK 465 ASP A 76 REMARK 465 ASP A 77 REMARK 465 GLU A 78 REMARK 465 SER A 79 REMARK 465 VAL A 80 REMARK 465 PRO A 81 REMARK 465 GLU A 82 REMARK 465 ASN A 83 REMARK 465 VAL A 84 REMARK 465 LEU A 85 REMARK 465 SER A 86 REMARK 465 LYS A 414 REMARK 465 LYS A 415 REMARK 465 GLU A 477 REMARK 465 GLN A 478 REMARK 465 GLU A 479 REMARK 465 PRO A 480 REMARK 465 SER A 481 REMARK 465 LYS A 482 REMARK 465 LYS A 483 REMARK 465 GLN A 484 REMARK 465 LYS A 485 REMARK 465 LYS A 486 REMARK 465 GLN A 487 REMARK 465 HIS A 488 REMARK 465 GLU A 489 REMARK 465 GLY A 490 REMARK 465 SER A 491 REMARK 465 LYS A 492 REMARK 465 LYS A 493 REMARK 465 LYS A 494 REMARK 465 ALA A 495 REMARK 465 ALA A 496 REMARK 465 ALA A 497 REMARK 465 ARG A 498 REMARK 465 ASP A 499 REMARK 465 VAL A 500 REMARK 465 THR A 501 REMARK 465 LEU A 502 REMARK 465 GLU A 503 REMARK 465 ASN A 504 REMARK 465 ARG A 505 REMARK 465 LEU A 506 REMARK 465 GLN A 507 REMARK 465 ASN A 508 REMARK 465 MET A 509 REMARK 465 GLU A 510 REMARK 465 VAL A 511 REMARK 465 THR A 512 REMARK 465 ASP A 513 REMARK 465 ALA A 514 REMARK 465 LEU A 515 REMARK 465 GLU A 516 REMARK 465 HIS A 517 REMARK 465 HIS A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 465 HIS A 521 REMARK 465 HIS A 522 REMARK 465 MET B 1 REMARK 465 ILE B 476 REMARK 465 GLU B 477 REMARK 465 GLN B 478 REMARK 465 GLU B 479 REMARK 465 PRO B 480 REMARK 465 SER B 481 REMARK 465 LYS B 482 REMARK 465 LYS B 483 REMARK 465 GLN B 484 REMARK 465 LYS B 485 REMARK 465 LYS B 486 REMARK 465 GLN B 487 REMARK 465 HIS B 488 REMARK 465 GLU B 489 REMARK 465 GLY B 490 REMARK 465 SER B 491 REMARK 465 LYS B 492 REMARK 465 LYS B 493 REMARK 465 LYS B 494 REMARK 465 ALA B 495 REMARK 465 ALA B 496 REMARK 465 ALA B 497 REMARK 465 ARG B 498 REMARK 465 ASP B 499 REMARK 465 VAL B 500 REMARK 465 THR B 501 REMARK 465 LEU B 502 REMARK 465 GLU B 503 REMARK 465 ASN B 504 REMARK 465 ARG B 505 REMARK 465 LEU B 506 REMARK 465 GLN B 507 REMARK 465 ASN B 508 REMARK 465 MET B 509 REMARK 465 GLU B 510 REMARK 465 VAL B 511 REMARK 465 THR B 512 REMARK 465 ASP B 513 REMARK 465 ALA B 514 REMARK 465 LEU B 515 REMARK 465 GLU B 516 REMARK 465 HIS B 517 REMARK 465 HIS B 518 REMARK 465 HIS B 519 REMARK 465 HIS B 520 REMARK 465 HIS B 521 REMARK 465 HIS B 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 ILE A 64 CG1 CG2 CD1 REMARK 470 LEU A 95 CG CD1 CD2 REMARK 470 ASN A 97 CG OD1 ND2 REMARK 470 LEU A 98 CG CD1 CD2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 VAL A 100 CG1 CG2 REMARK 470 SER A 101 OG REMARK 470 GLN A 102 CG CD OE1 NE2 REMARK 470 ILE A 103 CG1 CG2 CD1 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 108 CG CD1 CD2 REMARK 470 SER A 146 OG REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 CYS A 162 SG REMARK 470 TYR A 168 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 THR A 413 OG1 CG2 REMARK 470 MET A 416 CG SD CE REMARK 470 MET A 417 CG SD CE REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 GLU A 466 CG CD OE1 OE2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 MET B 68 CG SD CE REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 VAL B 74 CG1 CG2 REMARK 470 ASP B 77 CG OD1 OD2 REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 SER B 79 OG REMARK 470 VAL B 80 CG1 CG2 REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 ASP B 89 CG OD1 OD2 REMARK 470 THR B 91 OG1 CG2 REMARK 470 ASP B 93 CG OD1 OD2 REMARK 470 LEU B 98 CG CD1 CD2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 LYS B 231 CG CD CE NZ REMARK 470 GLU B 246 CG CD OE1 OE2 REMARK 470 LEU B 290 CG CD1 CD2 REMARK 470 ARG B 302 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 304 CG CD OE1 OE2 REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 317 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 325 CG CD OE1 OE2 REMARK 470 PHE B 351 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 376 CG CD CE NZ REMARK 470 ASP B 378 CG OD1 OD2 REMARK 470 PHE B 389 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 391 CG CD OE1 OE2 REMARK 470 GLN B 412 CG CD OE1 NE2 REMARK 470 THR B 413 OG1 CG2 REMARK 470 LYS B 414 CG CD CE NZ REMARK 470 LYS B 415 CG CD CE NZ REMARK 470 MET B 417 CG SD CE REMARK 470 ASP B 418 CG OD1 OD2 REMARK 470 PHE B 422 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 448 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -142.05 -89.54 REMARK 500 PRO A 30 -150.75 -65.19 REMARK 500 ASP A 93 -165.77 -102.88 REMARK 500 ALA A 96 -19.63 -142.58 REMARK 500 LEU A 98 178.18 66.91 REMARK 500 LYS A 99 -156.60 -168.50 REMARK 500 VAL A 100 -88.52 25.26 REMARK 500 ILE A 145 79.21 -109.60 REMARK 500 GLU A 156 -62.48 -97.13 REMARK 500 LYS A 167 -46.37 67.75 REMARK 500 MET A 176 -18.35 -49.69 REMARK 500 SER A 191 138.50 57.80 REMARK 500 ARG A 192 -12.20 60.38 REMARK 500 ARG A 230 31.96 -91.31 REMARK 500 LYS A 231 -66.31 61.62 REMARK 500 GLU A 246 -53.95 -140.58 REMARK 500 SER A 255 145.14 178.26 REMARK 500 GLU A 256 38.97 -96.34 REMARK 500 PRO A 291 97.67 -65.53 REMARK 500 ASP A 334 -130.27 -77.64 REMARK 500 PHE A 341 -70.08 -49.52 REMARK 500 THR A 399 -133.99 55.93 REMARK 500 LYS A 419 97.73 85.50 REMARK 500 THR A 446 -135.00 -143.36 REMARK 500 GLU A 466 -74.13 -63.67 REMARK 500 ASN B 83 -50.50 72.51 REMARK 500 SER B 86 101.95 -53.17 REMARK 500 THR B 91 -159.06 -129.48 REMARK 500 LYS B 99 -176.52 -66.19 REMARK 500 GLU B 134 40.16 -98.80 REMARK 500 CYS B 162 31.36 -175.52 REMARK 500 TYR B 168 85.05 64.28 REMARK 500 ASP B 178 62.02 63.22 REMARK 500 GLU B 246 -47.78 -144.36 REMARK 500 SER B 255 138.32 -171.47 REMARK 500 GLU B 256 39.20 -92.42 REMARK 500 HIS B 280 58.31 -101.60 REMARK 500 PRO B 291 109.65 -24.20 REMARK 500 ASN B 335 35.80 36.78 REMARK 500 GLU B 391 -6.59 -57.27 REMARK 500 LEU B 392 -50.84 24.28 REMARK 500 THR B 399 -132.01 51.34 REMARK 500 ARG B 407 68.02 60.58 REMARK 500 THR B 413 166.25 68.12 REMARK 500 LYS B 419 132.35 -175.70 REMARK 500 THR B 446 -144.82 -142.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SER A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SER B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RQE RELATED DB: PDB DBREF 4RQF A 1 514 UNP P49591 SYSC_HUMAN 1 514 DBREF 4RQF B 1 514 UNP P49591 SYSC_HUMAN 1 514 DBREF 4RQF C 1 76 PDB 4RQF 4RQF 1 76 SEQADV 4RQF LYS A 447 UNP P49591 GLU 447 ENGINEERED MUTATION SEQADV 4RQF LEU A 515 UNP P49591 EXPRESSION TAG SEQADV 4RQF GLU A 516 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS A 517 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS A 518 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS A 519 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS A 520 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS A 521 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS A 522 UNP P49591 EXPRESSION TAG SEQADV 4RQF LYS B 447 UNP P49591 GLU 447 ENGINEERED MUTATION SEQADV 4RQF LEU B 515 UNP P49591 EXPRESSION TAG SEQADV 4RQF GLU B 516 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS B 517 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS B 518 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS B 519 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS B 520 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS B 521 UNP P49591 EXPRESSION TAG SEQADV 4RQF HIS B 522 UNP P49591 EXPRESSION TAG SEQRES 1 C 90 G G C C G G A U G A U C C SEQRES 2 C 90 U C A G U G G U C U G G G SEQRES 3 C 90 G U G C A G G C U U C A A SEQRES 4 C 90 A C C U G U A G C U G U C SEQRES 5 C 90 U A G C G A C A G A G U G SEQRES 6 C 90 G U U C A A U U C C A C C SEQRES 7 C 90 U U U C G G G C G C C A SEQRES 1 A 522 MET VAL LEU ASP LEU ASP LEU PHE ARG VAL ASP LYS GLY SEQRES 2 A 522 GLY ASP PRO ALA LEU ILE ARG GLU THR GLN GLU LYS ARG SEQRES 3 A 522 PHE LYS ASP PRO GLY LEU VAL ASP GLN LEU VAL LYS ALA SEQRES 4 A 522 ASP SER GLU TRP ARG ARG CYS ARG PHE ARG ALA ASP ASN SEQRES 5 A 522 LEU ASN LYS LEU LYS ASN LEU CYS SER LYS THR ILE GLY SEQRES 6 A 522 GLU LYS MET LYS LYS LYS GLU PRO VAL GLY ASP ASP GLU SEQRES 7 A 522 SER VAL PRO GLU ASN VAL LEU SER PHE ASP ASP LEU THR SEQRES 8 A 522 ALA ASP ALA LEU ALA ASN LEU LYS VAL SER GLN ILE LYS SEQRES 9 A 522 LYS VAL ARG LEU LEU ILE ASP GLU ALA ILE LEU LYS CYS SEQRES 10 A 522 ASP ALA GLU ARG ILE LYS LEU GLU ALA GLU ARG PHE GLU SEQRES 11 A 522 ASN LEU ARG GLU ILE GLY ASN LEU LEU HIS PRO SER VAL SEQRES 12 A 522 PRO ILE SER ASN ASP GLU ASP VAL ASP ASN LYS VAL GLU SEQRES 13 A 522 ARG ILE TRP GLY ASP CYS THR VAL ARG LYS LYS TYR SER SEQRES 14 A 522 HIS VAL ASP LEU VAL VAL MET VAL ASP GLY PHE GLU GLY SEQRES 15 A 522 GLU LYS GLY ALA VAL VAL ALA GLY SER ARG GLY TYR PHE SEQRES 16 A 522 LEU LYS GLY VAL LEU VAL PHE LEU GLU GLN ALA LEU ILE SEQRES 17 A 522 GLN TYR ALA LEU ARG THR LEU GLY SER ARG GLY TYR ILE SEQRES 18 A 522 PRO ILE TYR THR PRO PHE PHE MET ARG LYS GLU VAL MET SEQRES 19 A 522 GLN GLU VAL ALA GLN LEU SER GLN PHE ASP GLU GLU LEU SEQRES 20 A 522 TYR LYS VAL ILE GLY LYS GLY SER GLU LYS SER ASP ASP SEQRES 21 A 522 ASN SER TYR ASP GLU LYS TYR LEU ILE ALA THR SER GLU SEQRES 22 A 522 GLN PRO ILE ALA ALA LEU HIS ARG ASP GLU TRP LEU ARG SEQRES 23 A 522 PRO GLU ASP LEU PRO ILE LYS TYR ALA GLY LEU SER THR SEQRES 24 A 522 CYS PHE ARG GLN GLU VAL GLY SER HIS GLY ARG ASP THR SEQRES 25 A 522 ARG GLY ILE PHE ARG VAL HIS GLN PHE GLU LYS ILE GLU SEQRES 26 A 522 GLN PHE VAL TYR SER SER PRO HIS ASP ASN LYS SER TRP SEQRES 27 A 522 GLU MET PHE GLU GLU MET ILE THR THR ALA GLU GLU PHE SEQRES 28 A 522 TYR GLN SER LEU GLY ILE PRO TYR HIS ILE VAL ASN ILE SEQRES 29 A 522 VAL SER GLY SER LEU ASN HIS ALA ALA SER LYS LYS LEU SEQRES 30 A 522 ASP LEU GLU ALA TRP PHE PRO GLY SER GLY ALA PHE ARG SEQRES 31 A 522 GLU LEU VAL SER CYS SER ASN CYS THR ASP TYR GLN ALA SEQRES 32 A 522 ARG ARG LEU ARG ILE ARG TYR GLY GLN THR LYS LYS MET SEQRES 33 A 522 MET ASP LYS VAL GLU PHE VAL HIS MET LEU ASN ALA THR SEQRES 34 A 522 MET CYS ALA THR THR ARG THR ILE CYS ALA ILE LEU GLU SEQRES 35 A 522 ASN TYR GLN THR LYS LYS GLY ILE THR VAL PRO GLU LYS SEQRES 36 A 522 LEU LYS GLU PHE MET PRO PRO GLY LEU GLN GLU LEU ILE SEQRES 37 A 522 PRO PHE VAL LYS PRO ALA PRO ILE GLU GLN GLU PRO SER SEQRES 38 A 522 LYS LYS GLN LYS LYS GLN HIS GLU GLY SER LYS LYS LYS SEQRES 39 A 522 ALA ALA ALA ARG ASP VAL THR LEU GLU ASN ARG LEU GLN SEQRES 40 A 522 ASN MET GLU VAL THR ASP ALA LEU GLU HIS HIS HIS HIS SEQRES 41 A 522 HIS HIS SEQRES 1 B 522 MET VAL LEU ASP LEU ASP LEU PHE ARG VAL ASP LYS GLY SEQRES 2 B 522 GLY ASP PRO ALA LEU ILE ARG GLU THR GLN GLU LYS ARG SEQRES 3 B 522 PHE LYS ASP PRO GLY LEU VAL ASP GLN LEU VAL LYS ALA SEQRES 4 B 522 ASP SER GLU TRP ARG ARG CYS ARG PHE ARG ALA ASP ASN SEQRES 5 B 522 LEU ASN LYS LEU LYS ASN LEU CYS SER LYS THR ILE GLY SEQRES 6 B 522 GLU LYS MET LYS LYS LYS GLU PRO VAL GLY ASP ASP GLU SEQRES 7 B 522 SER VAL PRO GLU ASN VAL LEU SER PHE ASP ASP LEU THR SEQRES 8 B 522 ALA ASP ALA LEU ALA ASN LEU LYS VAL SER GLN ILE LYS SEQRES 9 B 522 LYS VAL ARG LEU LEU ILE ASP GLU ALA ILE LEU LYS CYS SEQRES 10 B 522 ASP ALA GLU ARG ILE LYS LEU GLU ALA GLU ARG PHE GLU SEQRES 11 B 522 ASN LEU ARG GLU ILE GLY ASN LEU LEU HIS PRO SER VAL SEQRES 12 B 522 PRO ILE SER ASN ASP GLU ASP VAL ASP ASN LYS VAL GLU SEQRES 13 B 522 ARG ILE TRP GLY ASP CYS THR VAL ARG LYS LYS TYR SER SEQRES 14 B 522 HIS VAL ASP LEU VAL VAL MET VAL ASP GLY PHE GLU GLY SEQRES 15 B 522 GLU LYS GLY ALA VAL VAL ALA GLY SER ARG GLY TYR PHE SEQRES 16 B 522 LEU LYS GLY VAL LEU VAL PHE LEU GLU GLN ALA LEU ILE SEQRES 17 B 522 GLN TYR ALA LEU ARG THR LEU GLY SER ARG GLY TYR ILE SEQRES 18 B 522 PRO ILE TYR THR PRO PHE PHE MET ARG LYS GLU VAL MET SEQRES 19 B 522 GLN GLU VAL ALA GLN LEU SER GLN PHE ASP GLU GLU LEU SEQRES 20 B 522 TYR LYS VAL ILE GLY LYS GLY SER GLU LYS SER ASP ASP SEQRES 21 B 522 ASN SER TYR ASP GLU LYS TYR LEU ILE ALA THR SER GLU SEQRES 22 B 522 GLN PRO ILE ALA ALA LEU HIS ARG ASP GLU TRP LEU ARG SEQRES 23 B 522 PRO GLU ASP LEU PRO ILE LYS TYR ALA GLY LEU SER THR SEQRES 24 B 522 CYS PHE ARG GLN GLU VAL GLY SER HIS GLY ARG ASP THR SEQRES 25 B 522 ARG GLY ILE PHE ARG VAL HIS GLN PHE GLU LYS ILE GLU SEQRES 26 B 522 GLN PHE VAL TYR SER SER PRO HIS ASP ASN LYS SER TRP SEQRES 27 B 522 GLU MET PHE GLU GLU MET ILE THR THR ALA GLU GLU PHE SEQRES 28 B 522 TYR GLN SER LEU GLY ILE PRO TYR HIS ILE VAL ASN ILE SEQRES 29 B 522 VAL SER GLY SER LEU ASN HIS ALA ALA SER LYS LYS LEU SEQRES 30 B 522 ASP LEU GLU ALA TRP PHE PRO GLY SER GLY ALA PHE ARG SEQRES 31 B 522 GLU LEU VAL SER CYS SER ASN CYS THR ASP TYR GLN ALA SEQRES 32 B 522 ARG ARG LEU ARG ILE ARG TYR GLY GLN THR LYS LYS MET SEQRES 33 B 522 MET ASP LYS VAL GLU PHE VAL HIS MET LEU ASN ALA THR SEQRES 34 B 522 MET CYS ALA THR THR ARG THR ILE CYS ALA ILE LEU GLU SEQRES 35 B 522 ASN TYR GLN THR LYS LYS GLY ILE THR VAL PRO GLU LYS SEQRES 36 B 522 LEU LYS GLU PHE MET PRO PRO GLY LEU GLN GLU LEU ILE SEQRES 37 B 522 PRO PHE VAL LYS PRO ALA PRO ILE GLU GLN GLU PRO SER SEQRES 38 B 522 LYS LYS GLN LYS LYS GLN HIS GLU GLY SER LYS LYS LYS SEQRES 39 B 522 ALA ALA ALA ARG ASP VAL THR LEU GLU ASN ARG LEU GLN SEQRES 40 B 522 ASN MET GLU VAL THR ASP ALA LEU GLU HIS HIS HIS HIS SEQRES 41 B 522 HIS HIS HET ANP A 602 31 HET SER A 601 7 HET SER B 601 7 HET ANP B 602 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM SER SERINE FORMUL 4 ANP 2(C10 H17 N6 O12 P3) FORMUL 5 SER 2(C3 H7 N O3) HELIX 1 1 ASP A 4 PHE A 8 5 5 HELIX 2 2 ASP A 15 PHE A 27 1 13 HELIX 3 3 GLY A 31 ILE A 64 1 34 HELIX 4 4 LYS A 99 GLU A 134 1 36 HELIX 5 5 ASP A 148 ASN A 153 1 6 HELIX 6 6 SER A 169 VAL A 177 1 9 HELIX 7 7 GLY A 182 ALA A 189 1 8 HELIX 8 8 GLY A 198 ARG A 218 1 21 HELIX 9 9 LYS A 231 ALA A 238 1 8 HELIX 10 10 GLN A 239 GLU A 246 1 8 HELIX 11 11 SER A 272 ALA A 278 1 7 HELIX 12 12 LEU A 279 ARG A 281 5 3 HELIX 13 13 ASN A 335 LEU A 355 1 21 HELIX 14 14 VAL A 365 LEU A 369 5 5 HELIX 15 15 ASP A 400 LEU A 406 1 7 HELIX 16 16 ALA A 432 TYR A 444 1 13 HELIX 17 17 LYS A 455 PHE A 459 5 5 HELIX 18 18 LEU B 5 ARG B 9 5 5 HELIX 19 19 PRO B 16 PHE B 27 1 12 HELIX 20 20 PRO B 30 LYS B 71 1 42 HELIX 21 21 ALA B 92 LEU B 98 1 7 HELIX 22 22 LYS B 99 GLU B 134 1 36 HELIX 23 23 ASP B 148 ASN B 153 1 6 HELIX 24 24 SER B 169 VAL B 177 1 9 HELIX 25 25 GLY B 182 GLY B 190 1 9 HELIX 26 26 GLY B 198 ARG B 218 1 21 HELIX 27 27 LYS B 231 ALA B 238 1 8 HELIX 28 28 GLN B 239 GLU B 246 1 8 HELIX 29 29 SER B 272 ALA B 278 1 7 HELIX 30 30 PRO B 332 ASP B 334 5 3 HELIX 31 31 ASN B 335 LEU B 355 1 21 HELIX 32 32 VAL B 365 LEU B 369 5 5 HELIX 33 33 ASP B 400 ARG B 407 1 8 HELIX 34 34 ALA B 432 TYR B 444 1 13 HELIX 35 35 PRO B 453 GLU B 458 1 6 SHEET 1 A10 LYS A 154 TRP A 159 0 SHEET 2 A10 TYR A 359 ASN A 363 -1 O TYR A 359 N TRP A 159 SHEET 3 A10 LYS A 375 PHE A 383 -1 O ASP A 378 N VAL A 362 SHEET 4 A10 ALA A 388 ASN A 397 -1 O VAL A 393 N LEU A 379 SHEET 5 A10 HIS A 424 CYS A 431 -1 O THR A 429 N SER A 394 SHEET 6 A10 GLN A 320 SER A 330 -1 N GLN A 326 O ALA A 428 SHEET 7 A10 ILE A 292 PHE A 301 -1 N TYR A 294 O PHE A 327 SHEET 8 A10 ILE A 221 TYR A 224 1 N ILE A 221 O ALA A 295 SHEET 9 A10 PHE B 195 LYS B 197 -1 O LEU B 196 N TYR A 224 SHEET 10 A10 PHE B 180 GLU B 181 -1 N GLU B 181 O PHE B 195 SHEET 1 B10 PHE A 180 GLU A 181 0 SHEET 2 B10 PHE A 195 LYS A 197 -1 O PHE A 195 N GLU A 181 SHEET 3 B10 ILE B 221 TYR B 224 -1 O TYR B 224 N LEU A 196 SHEET 4 B10 ILE B 292 PHE B 301 1 O ALA B 295 N ILE B 221 SHEET 5 B10 GLN B 320 SER B 330 -1 O GLU B 325 N GLY B 296 SHEET 6 B10 HIS B 424 CYS B 431 -1 O ALA B 428 N GLN B 326 SHEET 7 B10 ALA B 388 ASN B 397 -1 N SER B 396 O ASN B 427 SHEET 8 B10 LYS B 375 PHE B 383 -1 N PHE B 383 O ALA B 388 SHEET 9 B10 TYR B 359 ASN B 363 -1 N HIS B 360 O GLU B 380 SHEET 10 B10 LYS B 154 TRP B 159 -1 N TRP B 159 O TYR B 359 SHEET 1 C 6 PHE A 228 MET A 229 0 SHEET 2 C 6 ASP A 264 LEU A 268 -1 O TYR A 267 N MET A 229 SHEET 3 C 6 LYS A 249 GLY A 252 -1 N VAL A 250 O LYS A 266 SHEET 4 C 6 TYR B 248 GLY B 252 -1 O ILE B 251 N LYS A 249 SHEET 5 C 6 ASP B 264 LEU B 268 -1 O LYS B 266 N VAL B 250 SHEET 6 C 6 PHE B 228 ARG B 230 -1 N MET B 229 O TYR B 267 SHEET 1 D 2 TRP A 284 LEU A 285 0 SHEET 2 D 2 ARG A 409 TYR A 410 1 O ARG A 409 N LEU A 285 SHEET 1 E 2 GLY A 449 THR A 451 0 SHEET 2 E 2 LEU A 467 PRO A 469 -1 O ILE A 468 N ILE A 450 SHEET 1 F 2 GLU B 283 TRP B 284 0 SHEET 2 F 2 ILE B 408 ARG B 409 1 O ARG B 409 N GLU B 283 SHEET 1 G 2 GLY B 449 THR B 451 0 SHEET 2 G 2 LEU B 467 PRO B 469 -1 O ILE B 468 N ILE B 450 CISPEP 1 MET A 417 ASP A 418 0 -0.45 CISPEP 2 ASP B 161 CYS B 162 0 5.43 SITE 1 AC1 8 ARG A 317 VAL A 318 PHE A 321 LEU A 392 SITE 2 AC1 8 SER A 394 ALA A 432 ARG A 435 SER A 601 SITE 1 AC2 7 THR A 271 GLU A 273 GLU A 325 ASN A 427 SITE 2 AC2 7 ALA A 428 THR A 429 ANP A 602 SITE 1 AC3 7 THR B 271 GLU B 273 LYS B 323 SER B 394 SITE 2 AC3 7 ASN B 427 THR B 429 ANP B 602 SITE 1 AC4 7 ARG B 317 VAL B 318 PHE B 321 LEU B 392 SITE 2 AC4 7 ALA B 432 ARG B 435 SER B 601 CRYST1 160.377 108.894 89.491 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006235 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011174 0.00000