PDB Short entry for 4RT2
HEADER    TRANSFERASE/DNA                         12-NOV-14   4RT2              
TITLE     TERNARY COMPLEX CRYSTAL STRUCTURE OF DNA POLYMERASE BETA WITH (ALPHA, 
TITLE    2 BETA)-CH2-(BETA,GAMMA)-NH-DTTP                                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE BETA;                                       
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 2.7.7.7, 4.2.99.-;                                               
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-
COMPND   8 3');                                                                 
COMPND   9 CHAIN: T;                                                            
COMPND  10 SYNONYM: TEMPLATE STRAND;                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 MOL_ID: 3;                                                           
COMPND  13 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3');          
COMPND  14 CHAIN: P;                                                            
COMPND  15 SYNONYM: PRIMER STRAND;                                              
COMPND  16 ENGINEERED: YES;                                                     
COMPND  17 MOL_ID: 4;                                                           
COMPND  18 MOLECULE: DNA (5'-D(P*GP*TP*CP*GP*G)-3');                            
COMPND  19 CHAIN: D;                                                            
COMPND  20 SYNONYM: DOWNSTREAM PRIMER STRAND;                                   
COMPND  21 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: POLB;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PWL11;                                    
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  13 ORGANISM_TAXID: 32630;                                               
SOURCE  14 MOL_ID: 3;                                                           
SOURCE  15 SYNTHETIC: YES;                                                      
SOURCE  16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  17 ORGANISM_TAXID: 32630;                                               
SOURCE  18 MOL_ID: 4;                                                           
SOURCE  19 SYNTHETIC: YES;                                                      
SOURCE  20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  21 ORGANISM_TAXID: 32630                                                
KEYWDS    DNA POLYMERASE BETA, CONFORMATIONAL CHANGE, ENZYME MECHANISM,         
KEYWDS   2 TRANSFERASE-DNA COMPLEX                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    V.K.BATRA,S.H.WILSON                                                  
REVDAT   2   22-NOV-17 4RT2    1       REMARK                                   
REVDAT   1   01-JUL-15 4RT2    0                                                
JRNL        AUTH   A.P.KADINA,B.A.KASHEMIROV,K.OERTELL,V.K.BATRA,S.H.WILSON,    
JRNL        AUTH 2 M.F.GOODMAN,C.E.MCKENNA                                      
JRNL        TITL   TWO SCAFFOLDS FROM TWO FLIPS: (ALPHA, BETA)/(BETA, GAMMA)    
JRNL        TITL 2 CH2/NH "MET-IM" ANALOGUES OF DTTP.                           
JRNL        REF    ORG.LETT.                     V.  17  2586 2015              
JRNL        REFN                   ISSN 1523-7060                               
JRNL        PMID   25970636                                                     
JRNL        DOI    10.1021/ACS.ORGLETT.5B00799                                  
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.92 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX                                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 21.24                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 94.0                           
REMARK   3   NUMBER OF REFLECTIONS             : 30033                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.179                           
REMARK   3   R VALUE            (WORKING SET) : 0.176                           
REMARK   3   FREE R VALUE                     : 0.211                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 6.650                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1997                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 21.2399 -  4.6129    0.99     2160   153  0.1425 0.1508        
REMARK   3     2  4.6129 -  3.6675    0.98     2110   150  0.1380 0.1502        
REMARK   3     3  3.6675 -  3.2057    0.99     2118   151  0.1558 0.1892        
REMARK   3     4  3.2057 -  2.9134    0.98     2078   149  0.2014 0.2626        
REMARK   3     5  2.9134 -  2.7050    0.98     2101   150  0.2125 0.2559        
REMARK   3     6  2.7050 -  2.5458    0.98     2059   147  0.2064 0.2521        
REMARK   3     7  2.5458 -  2.4185    0.97     2051   146  0.2060 0.2530        
REMARK   3     8  2.4185 -  2.3134    0.97     2080   149  0.1924 0.2269        
REMARK   3     9  2.3134 -  2.2244    0.97     2071   146  0.1923 0.2614        
REMARK   3    10  2.2244 -  2.1477    0.97     2046   145  0.1926 0.2376        
REMARK   3    11  2.1477 -  2.0806    0.96     2046   146  0.1973 0.2374        
REMARK   3    12  2.0806 -  2.0212    0.95     2009   143  0.2175 0.2861        
REMARK   3    13  2.0212 -  1.9680    0.82     1732   124  0.2312 0.2646        
REMARK   3    14  1.9680 -  1.9200    0.65     1375    98  0.2691 0.3406        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.210            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.310           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 29.37                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.007           3392                                  
REMARK   3   ANGLE     :  1.020           4703                                  
REMARK   3   CHIRALITY :  0.042            514                                  
REMARK   3   PLANARITY :  0.005            496                                  
REMARK   3   DIHEDRAL  : 19.637           1329                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4RT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-14.                  
REMARK 100 THE DEPOSITION ID IS D_1000087760.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 07-FEB-14                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU MICROMAX-007 HF             
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.54108                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU SATURN 92                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000                    
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK, HKL-2000                
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 30067                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.920                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 94.0                               
REMARK 200  DATA REDUNDANCY                : 3.600                              
REMARK 200  R MERGE                    (I) : 0.08400                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 13.8000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.99                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 67.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.80                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.49300                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHENIX                                                
REMARK 200 STARTING MODEL: PDB ENTRY 2FMS                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 44.73                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 16-18% PEG3350, PH 7.5, VAPOR            
REMARK 280  DIFFUSION, TEMPERATURE 291K                                         
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       39.70450            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5540 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19860 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     SER A     2                                                      
REMARK 465     LYS A     3                                                      
REMARK 465     ARG A     4                                                      
REMARK 465     LYS A     5                                                      
REMARK 465     ALA A     6                                                      
REMARK 465     PRO A     7                                                      
REMARK 465     GLN A     8                                                      
REMARK 465     GLU A     9                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A 248    CG   CD   CE   NZ                                   
REMARK 470     VAL A 303    CG1  CG2                                            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH T   129     O    HOH T   151              1.85            
REMARK 500   O    HOH A   749     O    HOH A   789              1.87            
REMARK 500   OP1   DC T    16     O    HOH T   149              1.90            
REMARK 500   OP2   DA T     6     O    HOH T   126              1.92            
REMARK 500   O    HOH P   103     O    HOH P   115              1.98            
REMARK 500   O    HOH T   128     O    HOH T   132              2.06            
REMARK 500   O    HOH A   735     O    HOH A   740              2.12            
REMARK 500   O    HOH T   128     O    HOH T   139              2.12            
REMARK 500   O    HOH T   115     O    HOH T   125              2.15            
REMARK 500   O    HOH A   686     O    HOH A   802              2.16            
REMARK 500   O    HOH P   111     O    HOH P   112              2.17            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DC T   8   O3'    DC T   8   C3'    -0.037                       
REMARK 500     DG D   1   P      DG D   1   OP3    -0.121                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DC T   5   O4' -  C1' -  N1  ANGL. DEV. =   2.0 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    CYS A 178     -136.11   -113.51                                   
REMARK 500    ASN A 294     -168.40   -126.68                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 401  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 190   OD1                                                    
REMARK 620 2 ASP A 192   OD2  97.7                                              
REMARK 620 3 N6T A 406   O3G  86.8 175.5                                        
REMARK 620 4 N6T A 406   O2B 172.7  88.9  86.6                                  
REMARK 620 5 N6T A 406   O1A  94.9  89.7  90.7  88.2                            
REMARK 620 6 HOH A 505   O    85.8  88.2  91.5  91.4 177.8                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 402  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 192   OD1                                                    
REMARK 620 2 ASP A 190   OD2 107.7                                              
REMARK 620 3 ASP A 256   OD2  95.3 105.4                                        
REMARK 620 4 N6T A 406   O1A  92.0  88.1 161.8                                  
REMARK 620 5 HOH A 665   O   163.4  85.5  90.6  78.1                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 404  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 LEU A  62   O                                                      
REMARK 620 2 LYS A  60   O    98.4                                              
REMARK 620 3 VAL A  65   O    97.9  86.6                                        
REMARK 620 4  DC D   3   OP1  94.5 167.0  89.8                                  
REMARK 620 5 HOH A 533   O    86.4  94.1 175.4  88.5                            
REMARK 620 6 HOH D 112   O   170.7  88.2  88.9  79.2  86.6                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 403  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR A 101   O                                                      
REMARK 620 2 ILE A 106   O    94.8                                              
REMARK 620 3  DG P   9   OP1 162.9  98.2                                        
REMARK 620 4 VAL A 103   O    94.6  87.5  96.9                                  
REMARK 620 5 HOH P 101   O    81.2  93.4  87.0 175.8                            
REMARK 620 6 HOH A 553   O    83.5 171.7  85.1  84.5  94.3                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N6T A 406                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4RT3   RELATED DB: PDB                                   
DBREF  4RT2 A    1   335  UNP    P06746   DPOLB_HUMAN      1    335             
DBREF  4RT2 T    1    16  PDB    4RT2     4RT2             1     16             
DBREF  4RT2 P    1    10  PDB    4RT2     4RT2             1     10             
DBREF  4RT2 D    1     5  PDB    4RT2     4RT2             1      5             
SEQRES   1 A  335  MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY          
SEQRES   2 A  335  GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU          
SEQRES   3 A  335  LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR          
SEQRES   4 A  335  ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS          
SEQRES   5 A  335  ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL          
SEQRES   6 A  335  GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA          
SEQRES   7 A  335  THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP          
SEQRES   8 A  335  ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER          
SEQRES   9 A  335  GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU          
SEQRES  10 A  335  GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP          
SEQRES  11 A  335  LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE          
SEQRES  12 A  335  GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU          
SEQRES  13 A  335  GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL          
SEQRES  14 A  335  ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG          
SEQRES  15 A  335  ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU          
SEQRES  16 A  335  THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO          
SEQRES  17 A  335  LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL          
SEQRES  18 A  335  HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS          
SEQRES  19 A  335  PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU          
SEQRES  20 A  335  LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE          
SEQRES  21 A  335  PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR          
SEQRES  22 A  335  GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA          
SEQRES  23 A  335  LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG          
SEQRES  24 A  335  PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO          
SEQRES  25 A  335  VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP          
SEQRES  26 A  335  LYS TYR ARG GLU PRO LYS ASP ARG SER GLU                      
SEQRES   1 T   16   DC  DC  DG  DA  DC  DA  DG  DC  DG  DC  DA  DT  DC          
SEQRES   2 T   16   DA  DG  DC                                                  
SEQRES   1 P   10   DG  DC  DT  DG  DA  DT  DG  DC  DG DOC                      
SEQRES   1 D    5   DG  DT  DC  DG  DG                                          
MODRES 4RT2 DOC P   10   DC  2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE             
HET    DOC  P  10      18                                                       
HET     MG  A 401       1                                                       
HET     NA  A 402       1                                                       
HET     NA  A 403       1                                                       
HET     NA  A 404       1                                                       
HET     CL  A 405       1                                                       
HET    N6T  A 406      29                                                       
HETNAM     DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE                           
HETNAM      MG MAGNESIUM ION                                                    
HETNAM      NA SODIUM ION                                                       
HETNAM      CL CHLORIDE ION                                                     
HETNAM     N6T 2'-DEOXY-5'-O-[(S)-HYDROXY{[(S)-                                 
HETNAM   2 N6T  HYDROXY(PHOSPHONOAMINO)PHOSPHORYL]METHYL}PHOSPHORYL]-           
HETNAM   3 N6T  3,4-DIHYDROTHYMIDINE                                            
FORMUL   3  DOC    C9 H14 N3 O6 P                                               
FORMUL   5   MG    MG 2+                                                        
FORMUL   6   NA    3(NA 1+)                                                     
FORMUL   9   CL    CL 1-                                                        
FORMUL  10  N6T    C11 H20 N3 O12 P3                                            
FORMUL  11  HOH   *387(H2 O)                                                    
HELIX    1   1 ASN A   12  VAL A   29  1                                  18    
HELIX    2   2 ALA A   32  TYR A   49  1                                  18    
HELIX    3   3 SER A   55  LYS A   61  1                                   7    
HELIX    4   4 GLY A   66  GLY A   80  1                                  15    
HELIX    5   5 LEU A   82  ASP A   91  1                                  10    
HELIX    6   6 ASP A   91  THR A  101  1                                  11    
HELIX    7   7 GLY A  107  GLU A  117  1                                  11    
HELIX    8   8 THR A  121  ASN A  128  1                                   8    
HELIX    9   9 GLU A  129  LEU A  132  5                                   4    
HELIX   10  10 ASN A  133  TYR A  142  1                                  10    
HELIX   11  11 TYR A  142  LYS A  148  1                                   7    
HELIX   12  12 ARG A  152  ASP A  170  1                                  19    
HELIX   13  13 CYS A  178  ARG A  183  1                                   6    
HELIX   14  14 LYS A  209  VAL A  221  1                                  13    
HELIX   15  15 PRO A  261  ASP A  263  5                                   3    
HELIX   16  16 GLN A  264  GLY A  274  1                                  11    
HELIX   17  17 SER A  275  LYS A  289  1                                  15    
HELIX   18  18 SER A  315  ILE A  323  1                                   9    
HELIX   19  19 GLU A  329  ARG A  333  5                                   5    
SHEET    1   A 2 ILE A 150  PRO A 151  0                                        
SHEET    2   A 2 SER A 187  SER A 188 -1  O  SER A 188   N  ILE A 150           
SHEET    1   B 5 ILE A 174  VAL A 177  0                                        
SHEET    2   B 5 MET A 191  THR A 196 -1  O  LEU A 194   N  THR A 176           
SHEET    3   B 5 ARG A 253  LEU A 259  1  O  ARG A 258   N  LEU A 195           
SHEET    4   B 5 LYS A 234  CYS A 239 -1  N  CYS A 239   O  ARG A 253           
SHEET    5   B 5 ILE A 224  LYS A 230 -1  N  LEU A 228   O  MET A 236           
SHEET    1   C 2 PHE A 291  ILE A 293  0                                        
SHEET    2   C 2 ILE A 298  PRO A 300 -1  O  ARG A 299   N  THR A 292           
LINK         O3'  DG P   9                 P   DOC P  10     1555   1555  1.61  
LINK         OD1 ASP A 190                MG    MG A 401     1555   1555  1.93  
LINK         OD2 ASP A 192                MG    MG A 401     1555   1555  2.03  
LINK        MG    MG A 401                 O3G N6T A 406     1555   1555  2.05  
LINK        MG    MG A 401                 O2B N6T A 406     1555   1555  2.10  
LINK         OD1 ASP A 192                NA    NA A 402     1555   1555  2.10  
LINK         OD2 ASP A 190                NA    NA A 402     1555   1555  2.10  
LINK         OD2 ASP A 256                NA    NA A 402     1555   1555  2.13  
LINK        MG    MG A 401                 O1A N6T A 406     1555   1555  2.14  
LINK         O   LEU A  62                NA    NA A 404     1555   1555  2.31  
LINK         O   THR A 101                NA    NA A 403     1555   1555  2.35  
LINK        NA    NA A 402                 O1A N6T A 406     1555   1555  2.40  
LINK         O   ILE A 106                NA    NA A 403     1555   1555  2.42  
LINK         O   LYS A  60                NA    NA A 404     1555   1555  2.42  
LINK         OP1  DG P   9                NA    NA A 403     1555   1555  2.45  
LINK         O   VAL A 103                NA    NA A 403     1555   1555  2.49  
LINK         O   VAL A  65                NA    NA A 404     1555   1555  2.49  
LINK         OP1  DC D   3                NA    NA A 404     1555   1555  2.71  
LINK        MG    MG A 401                 O   HOH A 505     1555   1555  2.07  
LINK        NA    NA A 402                 O   HOH A 665     1555   1555  2.11  
LINK        NA    NA A 404                 O   HOH A 533     1555   1555  2.41  
LINK        NA    NA A 403                 O   HOH P 101     1555   1555  2.46  
LINK        NA    NA A 404                 O   HOH D 112     1555   1555  2.72  
LINK        NA    NA A 403                 O   HOH A 553     1555   1555  2.76  
CISPEP   1 GLY A  274    SER A  275          0         0.51                     
SITE     1 AC1  5 ASP A 190  ASP A 192   NA A 402  N6T A 406                    
SITE     2 AC1  5 HOH A 505                                                     
SITE     1 AC2  6 ASP A 190  ASP A 192  ASP A 256   MG A 401                    
SITE     2 AC2  6 N6T A 406  HOH A 665                                          
SITE     1 AC3  6 THR A 101  VAL A 103  ILE A 106  HOH A 553                    
SITE     2 AC3  6  DG P   9  HOH P 101                                          
SITE     1 AC4  6 LYS A  60  LEU A  62  VAL A  65  HOH A 533                    
SITE     2 AC4  6  DC D   3  HOH D 112                                          
SITE     1 AC5  4 ALA A  32  ILE A  33  HIS A  34  LYS A  35                    
SITE     1 AC6 27 GLY A 179  SER A 180  ARG A 183  SER A 188                    
SITE     2 AC6 27 GLY A 189  ASP A 190  ASP A 192  TYR A 271                    
SITE     3 AC6 27 PHE A 272  THR A 273  GLY A 274  ASP A 276                    
SITE     4 AC6 27 ASN A 279   MG A 401   NA A 402  HOH A 505                    
SITE     5 AC6 27 HOH A 511  HOH A 575  HOH A 591  HOH A 592                    
SITE     6 AC6 27 HOH A 607  HOH A 665  HOH A 711  HOH A 742                    
SITE     7 AC6 27 HOH A 771  DOC P  10   DA T   6                               
CRYST1   50.587   79.409   55.315  90.00 107.27  90.00 P 1 21 1      2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.019768  0.000000  0.006147        0.00000                         
SCALE2      0.000000  0.012593  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.018932        0.00000