PDB Short entry for 4RTS HEADER TRANSFERASE/DNA 15-NOV-14 4RTS TITLE COMPLEX OF ESCHERICHIA COLI DNA ADENINE METHYLTRANSFERASE (DAM) WITH TITLE 2 ADOMET AND A 5-BP NON-CANONICAL SITE (GTCTA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ADENINE METHYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*AP*CP*TP*TP*AP*GP*AP*CP*TP*TP*AP*G)-3'); COMPND 7 CHAIN: F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*TP*AP*AP*G)-3'); COMPND 11 CHAIN: G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1110693; SOURCE 4 STRAIN: K-12 SUBSTR. MDS42; SOURCE 5 GENE: DAM, ECMDS42_2833; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS DAM METHYLATION, GATC RECOGNITION, BASE FLIPPING, BACTERIAL KEYWDS 2 VIRULENCE, METHYLATION-INDEPENDENT TRANSCRIPTIONAL REPRESSOR, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 4 20-SEP-23 4RTS 1 REMARK SEQADV REVDAT 3 20-MAY-15 4RTS 1 JRNL REVDAT 2 22-APR-15 4RTS 1 JRNL REVDAT 1 15-APR-15 4RTS 0 JRNL AUTH J.R.HORTON,X.ZHANG,R.M.BLUMENTHAL,X.CHENG JRNL TITL STRUCTURES OF ESCHERICHIA COLI DNA ADENINE METHYLTRANSFERASE JRNL TITL 2 (DAM) IN COMPLEX WITH A NON-GATC SEQUENCE: POTENTIAL JRNL TITL 3 IMPLICATIONS FOR METHYLATION-INDEPENDENT TRANSCRIPTIONAL JRNL TITL 4 REPRESSION. JRNL REF NUCLEIC ACIDS RES. V. 43 4296 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25845600 JRNL DOI 10.1093/NAR/GKV251 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 13924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6073 - 4.2475 0.93 2697 138 0.1589 0.1929 REMARK 3 2 4.2475 - 3.3724 0.97 2662 138 0.1585 0.2145 REMARK 3 3 3.3724 - 2.9464 0.97 2662 138 0.1958 0.2219 REMARK 3 4 2.9464 - 2.6771 0.98 2609 138 0.2107 0.2305 REMARK 3 5 2.6771 - 2.4900 0.97 2604 138 0.2130 0.2747 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2562 REMARK 3 ANGLE : 0.776 3580 REMARK 3 CHIRALITY : 0.033 384 REMARK 3 PLANARITY : 0.004 384 REMARK 3 DIHEDRAL : 19.167 954 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4369 -10.4740 95.8582 REMARK 3 T TENSOR REMARK 3 T11: 0.4939 T22: 0.5725 REMARK 3 T33: 0.4647 T12: -0.1046 REMARK 3 T13: -0.0792 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 0.1496 L22: 1.5320 REMARK 3 L33: 2.5360 L12: 0.4230 REMARK 3 L13: 0.5994 L23: 1.9497 REMARK 3 S TENSOR REMARK 3 S11: -0.2693 S12: 0.8116 S13: -0.0299 REMARK 3 S21: -0.6811 S22: 0.4378 S23: -0.0008 REMARK 3 S31: -0.2097 S32: 0.1615 S33: -0.1529 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 25:162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5398 -5.7603 109.6837 REMARK 3 T TENSOR REMARK 3 T11: 0.2839 T22: 0.3055 REMARK 3 T33: 0.2725 T12: -0.0042 REMARK 3 T13: -0.0147 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.1714 L22: 2.1095 REMARK 3 L33: 1.5475 L12: -0.0173 REMARK 3 L13: 0.0681 L23: 0.2901 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: -0.0937 S13: 0.0445 REMARK 3 S21: 0.1922 S22: -0.0271 S23: 0.1084 REMARK 3 S31: 0.0840 S32: -0.2157 S33: 0.0071 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 163:270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0038 -18.8364 87.8710 REMARK 3 T TENSOR REMARK 3 T11: 0.4591 T22: 0.3887 REMARK 3 T33: 0.3596 T12: -0.0067 REMARK 3 T13: 0.0061 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.0825 L22: 1.6753 REMARK 3 L33: 2.9878 L12: 0.1425 REMARK 3 L13: 0.1586 L23: 0.2298 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.2020 S13: -0.1627 REMARK 3 S21: -0.2811 S22: 0.0603 S23: -0.0942 REMARK 3 S31: 0.3013 S32: 0.1868 S33: -0.0040 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN F AND RESID 2:12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2440 10.5237 94.1965 REMARK 3 T TENSOR REMARK 3 T11: 0.5670 T22: 0.6977 REMARK 3 T33: 0.7786 T12: -0.0965 REMARK 3 T13: -0.0186 T23: 0.1658 REMARK 3 L TENSOR REMARK 3 L11: 7.0306 L22: 2.2358 REMARK 3 L33: 1.3356 L12: -0.2257 REMARK 3 L13: -0.2391 L23: -0.0285 REMARK 3 S TENSOR REMARK 3 S11: -0.6961 S12: 0.8179 S13: 1.3209 REMARK 3 S21: -0.5741 S22: 0.5535 S23: 0.0888 REMARK 3 S31: 0.2110 S32: -0.1763 S33: 0.0499 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN G AND RESID 1:12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2194 10.3757 94.8667 REMARK 3 T TENSOR REMARK 3 T11: 0.4767 T22: 0.6422 REMARK 3 T33: 0.6686 T12: -0.0908 REMARK 3 T13: 0.0350 T23: 0.1335 REMARK 3 L TENSOR REMARK 3 L11: 4.9442 L22: 0.1032 REMARK 3 L33: 0.1716 L12: 0.0782 REMARK 3 L13: -0.7970 L23: 0.0118 REMARK 3 S TENSOR REMARK 3 S11: -0.9219 S12: 0.6050 S13: 0.3962 REMARK 3 S21: -0.3319 S22: 0.3141 S23: 0.0571 REMARK 3 S31: 0.1764 S32: 0.1425 S33: 0.5504 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RTS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 33.604 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: GLRF REMARK 200 STARTING MODEL: PDB ENTRY 2G1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 4000, 80MM MAGNESIUM ACETATE, REMARK 280 50MM SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.77250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.49050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.87350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.49050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.77250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.87350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 189 REMARK 465 THR A 190 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 PHE A 193 REMARK 465 THR A 194 REMARK 465 ALA A 195 REMARK 465 TYR A 196 REMARK 465 HIS A 197 REMARK 465 THR A 198 REMARK 465 ASN A 199 REMARK 465 ARG A 248 REMARK 465 ARG A 249 REMARK 465 SER A 250 REMARK 465 ILE A 251 REMARK 465 SER A 252 REMARK 465 SER A 253 REMARK 465 ASN A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 THR A 257 REMARK 465 ARG A 258 REMARK 465 LYS A 259 REMARK 465 LYS A 260 REMARK 465 VAL A 261 REMARK 465 GLY A 271 REMARK 465 VAL A 272 REMARK 465 VAL A 273 REMARK 465 SER A 274 REMARK 465 PRO A 275 REMARK 465 ALA A 276 REMARK 465 LYS A 277 REMARK 465 LYS A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 TYR A 15 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 GLN A 102 CG CD OE1 NE2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 SER A 175 OG REMARK 470 LEU A 187 CG CD1 CD2 REMARK 470 SER A 188 OG REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 DA F 1 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DA F 1 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA F 1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA F 1 O3' DC F 2 P -0.124 REMARK 500 DA G 10 O3' DA G 11 P -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G1P RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI DNA ADENINE METHYLTRANSFERASE (DAM) WITH REMARK 900 COGNATE SEQUENCE REMARK 900 RELATED ID: 2ORE RELATED DB: PDB REMARK 900 BINARY STRUCTURE OF E.COLI DAM REMARK 900 RELATED ID: 4RTJ RELATED DB: PDB REMARK 900 RELATED ID: 4RTK RELATED DB: PDB REMARK 900 RELATED ID: 4RTL RELATED DB: PDB REMARK 900 RELATED ID: 4RTM RELATED DB: PDB REMARK 900 RELATED ID: 4RTN RELATED DB: PDB REMARK 900 RELATED ID: 4RTO RELATED DB: PDB REMARK 900 RELATED ID: 4RTP RELATED DB: PDB REMARK 900 RELATED ID: 4RTQ RELATED DB: PDB REMARK 900 RELATED ID: 4RTR RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT RESIDUES 175 WERE MODELED AS SER INSTEAD OF ALA REMARK 999 BECAUSE OF EXTRA DENSITY. DBREF 4RTS A 1 278 UNP H0Q7C9 H0Q7C9_ECOLI 1 278 DBREF 4RTS F 1 12 PDB 4RTS 4RTS 1 12 DBREF 4RTS G 1 12 PDB 4RTS 4RTS 1 12 SEQADV 4RTS MET A -19 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS GLY A -18 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS SER A -17 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS SER A -16 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS HIS A -15 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS HIS A -14 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS HIS A -13 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS HIS A -12 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS HIS A -11 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS HIS A -10 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS SER A -9 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS SER A -8 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS GLY A -7 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS LEU A -6 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS VAL A -5 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS PRO A -4 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS ARG A -3 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS GLY A -2 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS SER A -1 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS HIS A 0 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTS SER A 175 UNP H0Q7C9 ALA 175 SEE REMARK 999 SEQRES 1 A 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MET LYS LYS ASN ARG ALA SEQRES 3 A 298 PHE LEU LYS TRP ALA GLY GLY LYS TYR PRO LEU LEU ASP SEQRES 4 A 298 ASP ILE LYS ARG HIS LEU PRO LYS GLY GLU CYS LEU VAL SEQRES 5 A 298 GLU PRO PHE VAL GLY ALA GLY SER VAL PHE LEU ASN THR SEQRES 6 A 298 ASP PHE SER ARG TYR ILE LEU ALA ASP ILE ASN SER ASP SEQRES 7 A 298 LEU ILE SER LEU TYR ASN ILE VAL LYS MET ARG THR ASP SEQRES 8 A 298 GLU TYR VAL GLN ALA ALA ARG GLU LEU PHE VAL PRO GLU SEQRES 9 A 298 THR ASN CYS ALA GLU VAL TYR TYR GLN PHE ARG GLU GLU SEQRES 10 A 298 PHE ASN LYS SER GLN ASP PRO PHE ARG ARG ALA VAL LEU SEQRES 11 A 298 PHE LEU TYR LEU ASN ARG TYR GLY TYR ASN GLY LEU CYS SEQRES 12 A 298 ARG TYR ASN LEU ARG GLY GLU PHE ASN VAL PRO PHE GLY SEQRES 13 A 298 ARG TYR LYS LYS PRO TYR PHE PRO GLU ALA GLU LEU TYR SEQRES 14 A 298 HIS PHE ALA GLU LYS ALA GLN ASN ALA PHE PHE TYR CYS SEQRES 15 A 298 GLU SER TYR ALA ASP SER MET ALA ARG ALA ASP ASP SER SEQRES 16 A 298 SER VAL VAL TYR CYS ASP PRO PRO TYR ALA PRO LEU SER SEQRES 17 A 298 ALA THR ALA ASN PHE THR ALA TYR HIS THR ASN SER PHE SEQRES 18 A 298 THR LEU GLU GLN GLN ALA HIS LEU ALA GLU ILE ALA GLU SEQRES 19 A 298 GLY LEU VAL GLU ARG HIS ILE PRO VAL LEU ILE SER ASN SEQRES 20 A 298 HIS ASP THR MET LEU THR ARG GLU TRP TYR GLN ARG ALA SEQRES 21 A 298 LYS LEU HIS VAL VAL LYS VAL ARG ARG SER ILE SER SER SEQRES 22 A 298 ASN GLY GLY THR ARG LYS LYS VAL ASP GLU LEU LEU ALA SEQRES 23 A 298 LEU TYR LYS PRO GLY VAL VAL SER PRO ALA LYS LYS SEQRES 1 F 12 DA DC DT DT DA DG DA DC DT DT DA DG SEQRES 1 G 12 DT DC DT DA DA DG DT DC DT DA DA DG HET SAM A 301 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 4 SAM C15 H22 N6 O5 S FORMUL 5 HOH *43(H2 O) HELIX 1 1 LYS A 14 PRO A 16 5 3 HELIX 2 2 LEU A 17 LEU A 25 1 9 HELIX 3 3 VAL A 41 THR A 45 5 5 HELIX 4 4 ASN A 56 ARG A 69 1 14 HELIX 5 5 ARG A 69 GLU A 79 1 11 HELIX 6 6 LEU A 80 PHE A 81 5 2 HELIX 7 7 VAL A 82 ASN A 86 5 5 HELIX 8 8 CYS A 87 SER A 101 1 15 HELIX 9 9 ASP A 103 GLY A 118 1 16 HELIX 10 10 TYR A 119 LEU A 122 5 4 HELIX 11 11 PRO A 144 GLN A 156 1 13 HELIX 12 12 SER A 164 ALA A 170 1 7 HELIX 13 13 THR A 202 GLU A 218 1 17 HELIX 14 14 THR A 230 TYR A 237 1 8 SHEET 1 A 7 ALA A 158 CYS A 162 0 SHEET 2 A 7 ARG A 49 ASP A 54 1 N LEU A 52 O PHE A 159 SHEET 3 A 7 CYS A 30 GLU A 33 1 N LEU A 31 O ILE A 51 SHEET 4 A 7 SER A 176 CYS A 180 1 O VAL A 177 N VAL A 32 SHEET 5 A 7 VAL A 223 HIS A 228 1 O LEU A 224 N VAL A 178 SHEET 6 A 7 GLU A 263 TYR A 268 -1 O ALA A 266 N ILE A 225 SHEET 7 A 7 LYS A 241 VAL A 245 -1 N HIS A 243 O LEU A 265 SITE 1 AC1 14 TRP A 10 ALA A 11 GLY A 12 PRO A 34 SITE 2 AC1 14 PHE A 35 ASP A 54 ILE A 55 GLU A 163 SITE 3 AC1 14 SER A 164 TYR A 165 ASP A 181 PRO A 182 SITE 4 AC1 14 PRO A 183 TYR A 184 CRYST1 39.545 63.747 154.981 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025288 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006452 0.00000