PDB Short entry for 4RUH HEADER HYDROLASE 19-NOV-14 4RUH TITLE CRYSTAL STRUCTURE OF HUMAN CARNOSINASE-2 (CN2) IN COMPLEX WITH TITLE 2 INHIBITOR, BESTATIN AT 2.25 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC NON-SPECIFIC DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HUMAN CARNOSINASE-2 (CN-2); COMPND 5 SYNONYM: CNDP DIPEPTIDASE 2, GLUTAMATE CARBOXYPEPTIDASE-LIKE PROTEIN COMPND 6 1, PEPTIDASE A; COMPND 7 EC: 3.4.13.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CN2, CNDP DIPEPTIDASE 2 (METALLOPEPTIDASE M20 FAMILY) [ HOMO SOURCE 6 SAPIENS (HUMAN), CNDP2, CPGL, PEPA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS STRUCTURAL GENOMICS, ENZYME FUNCTION INITIATIVE, CARBOXYPEPTIDASE, KEYWDS 2 HYDROLASE, METALLOPROTEASE, PROTEASE, SUBSTRATE KEYWDS 3 CARNOSINE(DIPEPTIDE), COFACTOR MANGANESE, CYTOSOLIC EXPDTA X-RAY DIFFRACTION AUTHOR V.PANDYA,A.KAUSHIK,A.K.SINGH,R.P.SINGH,S.KUMARAN REVDAT 2 28-FEB-24 4RUH 1 REMARK LINK REVDAT 1 25-NOV-15 4RUH 0 JRNL AUTH V.PANDYA,A.KAUSHIK,A.K.SINGH,R.P.SINGH,S.KUMARAN JRNL TITL CRYSTAL STRUCTURE OF HUMAN CARNOSINASE-2 (CN2) IN COMPLEX JRNL TITL 2 WITH INHIBITOR, BESTATIN AT 2.25 A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 74921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6274 - 6.7326 0.86 2575 117 0.2667 0.2724 REMARK 3 2 6.7326 - 5.3508 0.87 2589 151 0.2545 0.2337 REMARK 3 3 5.3508 - 4.6765 0.87 2604 119 0.2047 0.2547 REMARK 3 4 4.6765 - 4.2498 0.87 2581 155 0.1887 0.2296 REMARK 3 5 4.2498 - 3.9457 0.87 2578 151 0.2002 0.2014 REMARK 3 6 3.9457 - 3.7134 0.88 2593 157 0.2071 0.2715 REMARK 3 7 3.7134 - 3.5276 0.87 2630 112 0.2040 0.2372 REMARK 3 8 3.5276 - 3.3742 0.88 2630 138 0.2143 0.2887 REMARK 3 9 3.3742 - 3.2444 0.88 2588 155 0.2197 0.3150 REMARK 3 10 3.2444 - 3.1325 0.88 2654 124 0.2148 0.3035 REMARK 3 11 3.1325 - 3.0347 0.89 2603 165 0.2088 0.2799 REMARK 3 12 3.0347 - 2.9480 0.88 2640 130 0.2150 0.2663 REMARK 3 13 2.9480 - 2.8704 0.88 2642 139 0.2263 0.3312 REMARK 3 14 2.8704 - 2.8004 0.88 2626 142 0.2256 0.3222 REMARK 3 15 2.8004 - 2.7368 0.89 2661 142 0.2199 0.3019 REMARK 3 16 2.7368 - 2.6786 0.89 2670 136 0.2289 0.3164 REMARK 3 17 2.6786 - 2.6250 0.89 2667 132 0.2563 0.2642 REMARK 3 18 2.6250 - 2.5755 0.89 2618 140 0.2187 0.3396 REMARK 3 19 2.5755 - 2.5295 0.89 2676 156 0.2100 0.2901 REMARK 3 20 2.5295 - 2.4866 0.90 2649 141 0.2129 0.2934 REMARK 3 21 2.4866 - 2.4465 0.90 2678 134 0.2076 0.3209 REMARK 3 22 2.4465 - 2.4089 0.89 2676 122 0.2294 0.3341 REMARK 3 23 2.4089 - 2.3735 0.90 2692 142 0.2345 0.3313 REMARK 3 24 2.3735 - 2.3401 0.90 2645 160 0.2322 0.3474 REMARK 3 25 2.3401 - 2.3085 0.90 2702 125 0.2292 0.3240 REMARK 3 26 2.3085 - 2.2785 0.90 2708 136 0.2295 0.3222 REMARK 3 27 2.2785 - 2.2500 0.89 2577 148 0.2072 0.2970 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 46.58 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.06410 REMARK 3 B22 (A**2) : 10.20990 REMARK 3 B33 (A**2) : -4.14580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7250 REMARK 3 ANGLE : 1.163 9835 REMARK 3 CHIRALITY : 0.072 1074 REMARK 3 PLANARITY : 0.005 1256 REMARK 3 DIHEDRAL : 14.789 2631 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97755 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 33.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 23.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.19200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M HEPES. 25% PPEG 4000, 100MM NACL, REMARK 280 PH 8.0, LIQUID DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.54500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.54500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMODIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 265 REMARK 465 VAL A 266 REMARK 465 ALA A 267 REMARK 465 ALA A 268 REMARK 465 VAL A 269 REMARK 465 THR A 270 REMARK 465 GLU A 271 REMARK 465 GLU A 272 REMARK 465 GLU A 273 REMARK 465 HIS A 274 REMARK 465 LYS A 275 REMARK 465 LEU A 276 REMARK 465 TYR A 277 REMARK 465 ASP A 278 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 LYS B 202 REMARK 465 ASN B 263 REMARK 465 GLU B 264 REMARK 465 ALA B 265 REMARK 465 VAL B 266 REMARK 465 ALA B 267 REMARK 465 ALA B 268 REMARK 465 VAL B 269 REMARK 465 THR B 270 REMARK 465 GLU B 271 REMARK 465 GLU B 272 REMARK 465 GLU B 273 REMARK 465 HIS B 274 REMARK 465 LYS B 275 REMARK 465 LEU B 276 REMARK 465 TYR B 277 REMARK 465 ASP B 278 REMARK 465 ASP B 279 REMARK 465 ASN B 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 PRO A 70 CG CD REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 ARG A 254 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 309 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 309 CZ3 CH2 REMARK 470 ASN A 347 CG OD1 ND2 REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 GLU A 408 CG CD OE1 OE2 REMARK 470 LYS A 474 CG CD CE NZ REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LEU B 69 CG CD1 CD2 REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 LYS B 186 CG CD CE NZ REMARK 470 ARG B 254 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 289 CG CD CE NZ REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 408 CG CD OE1 OE2 REMARK 470 LYS B 474 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 33.74 -83.30 REMARK 500 SER A 87 55.44 -140.81 REMARK 500 ASP A 133 19.13 -141.52 REMARK 500 THR A 183 -85.18 -113.07 REMARK 500 ASP A 195 52.25 -151.90 REMARK 500 ASN A 196 -169.90 -161.51 REMARK 500 LYS A 202 -71.81 -88.73 REMARK 500 ILE A 262 72.20 -42.84 REMARK 500 ASN A 263 92.26 -162.80 REMARK 500 ASN A 347 -57.03 113.16 REMARK 500 SER B 30 58.33 -91.79 REMARK 500 GLU B 108 3.58 -66.60 REMARK 500 THR B 183 -95.48 -123.99 REMARK 500 ASP B 195 52.72 -166.78 REMARK 500 HIS B 380 163.94 178.99 REMARK 500 HIS B 445 -3.68 79.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 NE2 REMARK 620 2 ASP A 132 OD2 92.7 REMARK 620 3 ASP A 195 OD1 93.2 103.3 REMARK 620 4 ASP A 195 OD2 83.2 160.8 58.5 REMARK 620 5 BES A 501 O2 95.5 106.3 148.7 92.8 REMARK 620 6 BES A 501 N2 152.7 114.3 84.7 72.5 73.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 132 OD1 REMARK 620 2 GLU A 167 OE2 96.1 REMARK 620 3 GLU A 167 OE1 151.0 58.7 REMARK 620 4 HIS A 445 NE2 101.2 120.6 82.6 REMARK 620 5 BES A 501 O3 116.8 143.1 91.7 71.0 REMARK 620 6 BES A 501 O2 95.7 87.5 97.0 144.8 73.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 99 NE2 REMARK 620 2 ASP B 132 OD2 83.8 REMARK 620 3 ASP B 195 OD1 110.3 86.9 REMARK 620 4 ASP B 195 OD2 89.6 142.5 60.9 REMARK 620 5 BES B 501 O2 92.5 102.2 156.4 115.0 REMARK 620 6 BES B 501 N2 166.3 104.9 81.1 89.5 75.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 132 OD1 REMARK 620 2 GLU B 167 OE2 79.4 REMARK 620 3 GLU B 167 OE1 137.8 58.5 REMARK 620 4 HIS B 445 NE2 76.5 105.1 110.8 REMARK 620 5 BES B 501 O2 99.6 95.3 86.9 158.0 REMARK 620 6 BES B 501 O3 134.4 146.2 87.7 85.3 82.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BES B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 505 DBREF 4RUH A 1 475 UNP Q96KP4 CNDP2_HUMAN 1 475 DBREF 4RUH B 1 475 UNP Q96KP4 CNDP2_HUMAN 1 475 SEQRES 1 A 475 MET ALA ALA LEU THR THR LEU PHE LYS TYR ILE ASP GLU SEQRES 2 A 475 ASN GLN ASP ARG TYR ILE LYS LYS LEU ALA LYS TRP VAL SEQRES 3 A 475 ALA ILE GLN SER VAL SER ALA TRP PRO GLU LYS ARG GLY SEQRES 4 A 475 GLU ILE ARG ARG MET MET GLU VAL ALA ALA ALA ASP VAL SEQRES 5 A 475 LYS GLN LEU GLY GLY SER VAL GLU LEU VAL ASP ILE GLY SEQRES 6 A 475 LYS GLN LYS LEU PRO ASP GLY SER GLU ILE PRO LEU PRO SEQRES 7 A 475 PRO ILE LEU LEU GLY ARG LEU GLY SER ASP PRO GLN LYS SEQRES 8 A 475 LYS THR VAL CYS ILE TYR GLY HIS LEU ASP VAL GLN PRO SEQRES 9 A 475 ALA ALA LEU GLU ASP GLY TRP ASP SER GLU PRO PHE THR SEQRES 10 A 475 LEU VAL GLU ARG ASP GLY LYS LEU TYR GLY ARG GLY SER SEQRES 11 A 475 THR ASP ASP LYS GLY PRO VAL ALA GLY TRP ILE ASN ALA SEQRES 12 A 475 LEU GLU ALA TYR GLN LYS THR GLY GLN GLU ILE PRO VAL SEQRES 13 A 475 ASN VAL ARG PHE CYS LEU GLU GLY MET GLU GLU SER GLY SEQRES 14 A 475 SER GLU GLY LEU ASP GLU LEU ILE PHE ALA ARG LYS ASP SEQRES 15 A 475 THR PHE PHE LYS ASP VAL ASP TYR VAL CYS ILE SER ASP SEQRES 16 A 475 ASN TYR TRP LEU GLY LYS LYS LYS PRO CYS ILE THR TYR SEQRES 17 A 475 GLY LEU ARG GLY ILE CYS TYR PHE PHE ILE GLU VAL GLU SEQRES 18 A 475 CYS SER ASN LYS ASP LEU HIS SER GLY VAL TYR GLY GLY SEQRES 19 A 475 SER VAL HIS GLU ALA MET THR ASP LEU ILE LEU LEU MET SEQRES 20 A 475 GLY SER LEU VAL ASP LYS ARG GLY ASN ILE LEU ILE PRO SEQRES 21 A 475 GLY ILE ASN GLU ALA VAL ALA ALA VAL THR GLU GLU GLU SEQRES 22 A 475 HIS LYS LEU TYR ASP ASP ILE ASP PHE ASP ILE GLU GLU SEQRES 23 A 475 PHE ALA LYS ASP VAL GLY ALA GLN ILE LEU LEU HIS SER SEQRES 24 A 475 HIS LYS LYS ASP ILE LEU MET HIS ARG TRP ARG TYR PRO SEQRES 25 A 475 SER LEU SER LEU HIS GLY ILE GLU GLY ALA PHE SER GLY SEQRES 26 A 475 SER GLY ALA LYS THR VAL ILE PRO ARG LYS VAL VAL GLY SEQRES 27 A 475 LYS PHE SER ILE ARG LEU VAL PRO ASN MET THR PRO GLU SEQRES 28 A 475 VAL VAL GLY GLU GLN VAL THR SER TYR LEU THR LYS LYS SEQRES 29 A 475 PHE ALA GLU LEU ARG SER PRO ASN GLU PHE LYS VAL TYR SEQRES 30 A 475 MET GLY HIS GLY GLY LYS PRO TRP VAL SER ASP PHE SER SEQRES 31 A 475 HIS PRO HIS TYR LEU ALA GLY ARG ARG ALA MET LYS THR SEQRES 32 A 475 VAL PHE GLY VAL GLU PRO ASP LEU THR ARG GLU GLY GLY SEQRES 33 A 475 SER ILE PRO VAL THR LEU THR PHE GLN GLU ALA THR GLY SEQRES 34 A 475 LYS ASN VAL MET LEU LEU PRO VAL GLY SER ALA ASP ASP SEQRES 35 A 475 GLY ALA HIS SER GLN ASN GLU LYS LEU ASN ARG TYR ASN SEQRES 36 A 475 TYR ILE GLU GLY THR LYS MET LEU ALA ALA TYR LEU TYR SEQRES 37 A 475 GLU VAL SER GLN LEU LYS ASP SEQRES 1 B 475 MET ALA ALA LEU THR THR LEU PHE LYS TYR ILE ASP GLU SEQRES 2 B 475 ASN GLN ASP ARG TYR ILE LYS LYS LEU ALA LYS TRP VAL SEQRES 3 B 475 ALA ILE GLN SER VAL SER ALA TRP PRO GLU LYS ARG GLY SEQRES 4 B 475 GLU ILE ARG ARG MET MET GLU VAL ALA ALA ALA ASP VAL SEQRES 5 B 475 LYS GLN LEU GLY GLY SER VAL GLU LEU VAL ASP ILE GLY SEQRES 6 B 475 LYS GLN LYS LEU PRO ASP GLY SER GLU ILE PRO LEU PRO SEQRES 7 B 475 PRO ILE LEU LEU GLY ARG LEU GLY SER ASP PRO GLN LYS SEQRES 8 B 475 LYS THR VAL CYS ILE TYR GLY HIS LEU ASP VAL GLN PRO SEQRES 9 B 475 ALA ALA LEU GLU ASP GLY TRP ASP SER GLU PRO PHE THR SEQRES 10 B 475 LEU VAL GLU ARG ASP GLY LYS LEU TYR GLY ARG GLY SER SEQRES 11 B 475 THR ASP ASP LYS GLY PRO VAL ALA GLY TRP ILE ASN ALA SEQRES 12 B 475 LEU GLU ALA TYR GLN LYS THR GLY GLN GLU ILE PRO VAL SEQRES 13 B 475 ASN VAL ARG PHE CYS LEU GLU GLY MET GLU GLU SER GLY SEQRES 14 B 475 SER GLU GLY LEU ASP GLU LEU ILE PHE ALA ARG LYS ASP SEQRES 15 B 475 THR PHE PHE LYS ASP VAL ASP TYR VAL CYS ILE SER ASP SEQRES 16 B 475 ASN TYR TRP LEU GLY LYS LYS LYS PRO CYS ILE THR TYR SEQRES 17 B 475 GLY LEU ARG GLY ILE CYS TYR PHE PHE ILE GLU VAL GLU SEQRES 18 B 475 CYS SER ASN LYS ASP LEU HIS SER GLY VAL TYR GLY GLY SEQRES 19 B 475 SER VAL HIS GLU ALA MET THR ASP LEU ILE LEU LEU MET SEQRES 20 B 475 GLY SER LEU VAL ASP LYS ARG GLY ASN ILE LEU ILE PRO SEQRES 21 B 475 GLY ILE ASN GLU ALA VAL ALA ALA VAL THR GLU GLU GLU SEQRES 22 B 475 HIS LYS LEU TYR ASP ASP ILE ASP PHE ASP ILE GLU GLU SEQRES 23 B 475 PHE ALA LYS ASP VAL GLY ALA GLN ILE LEU LEU HIS SER SEQRES 24 B 475 HIS LYS LYS ASP ILE LEU MET HIS ARG TRP ARG TYR PRO SEQRES 25 B 475 SER LEU SER LEU HIS GLY ILE GLU GLY ALA PHE SER GLY SEQRES 26 B 475 SER GLY ALA LYS THR VAL ILE PRO ARG LYS VAL VAL GLY SEQRES 27 B 475 LYS PHE SER ILE ARG LEU VAL PRO ASN MET THR PRO GLU SEQRES 28 B 475 VAL VAL GLY GLU GLN VAL THR SER TYR LEU THR LYS LYS SEQRES 29 B 475 PHE ALA GLU LEU ARG SER PRO ASN GLU PHE LYS VAL TYR SEQRES 30 B 475 MET GLY HIS GLY GLY LYS PRO TRP VAL SER ASP PHE SER SEQRES 31 B 475 HIS PRO HIS TYR LEU ALA GLY ARG ARG ALA MET LYS THR SEQRES 32 B 475 VAL PHE GLY VAL GLU PRO ASP LEU THR ARG GLU GLY GLY SEQRES 33 B 475 SER ILE PRO VAL THR LEU THR PHE GLN GLU ALA THR GLY SEQRES 34 B 475 LYS ASN VAL MET LEU LEU PRO VAL GLY SER ALA ASP ASP SEQRES 35 B 475 GLY ALA HIS SER GLN ASN GLU LYS LEU ASN ARG TYR ASN SEQRES 36 B 475 TYR ILE GLU GLY THR LYS MET LEU ALA ALA TYR LEU TYR SEQRES 37 B 475 GLU VAL SER GLN LEU LYS ASP HET BES A 501 22 HET MN A 502 1 HET MN A 503 1 HET BES B 501 22 HET MN B 502 1 HET MN B 503 1 HET GOL B 504 6 HET GOL B 505 6 HETNAM BES 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL- HETNAM 2 BES PENTANOIC ACID HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETSYN BES BESTATIN HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BES 2(C16 H24 N2 O4) FORMUL 4 MN 4(MN 2+) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 HOH *228(H2 O) HELIX 1 1 LEU A 4 ASN A 14 1 11 HELIX 2 2 ASN A 14 ILE A 28 1 15 HELIX 3 3 TRP A 34 GLU A 36 5 3 HELIX 4 4 LYS A 37 LEU A 55 1 19 HELIX 5 5 ALA A 106 GLY A 110 5 5 HELIX 6 6 ASP A 133 THR A 150 1 18 HELIX 7 7 MET A 165 GLY A 169 5 5 HELIX 8 8 GLY A 172 LYS A 181 1 10 HELIX 9 9 SER A 229 GLY A 233 1 5 HELIX 10 10 GLU A 238 GLY A 248 1 11 HELIX 11 11 ASP A 283 ASP A 290 1 8 HELIX 12 12 HIS A 300 ARG A 310 1 11 HELIX 13 13 THR A 349 ARG A 369 1 21 HELIX 14 14 HIS A 391 GLY A 406 1 16 HELIX 15 15 PRO A 419 GLY A 429 1 11 HELIX 16 16 ARG A 453 GLN A 472 1 20 HELIX 17 17 THR B 5 ASN B 14 1 10 HELIX 18 18 ASN B 14 ILE B 28 1 15 HELIX 19 19 TRP B 34 GLU B 36 5 3 HELIX 20 20 LYS B 37 LEU B 55 1 19 HELIX 21 21 ALA B 106 GLY B 110 5 5 HELIX 22 22 ASP B 133 THR B 150 1 18 HELIX 23 23 MET B 165 GLY B 169 5 5 HELIX 24 24 GLY B 172 ARG B 180 1 9 HELIX 25 25 SER B 229 GLY B 233 1 5 HELIX 26 26 GLU B 238 SER B 249 1 12 HELIX 27 27 ASP B 283 ASP B 290 1 8 HELIX 28 28 HIS B 300 ARG B 310 1 11 HELIX 29 29 THR B 349 LEU B 368 1 20 HELIX 30 30 HIS B 391 GLY B 406 1 16 HELIX 31 31 PRO B 419 GLY B 429 1 11 HELIX 32 32 ARG B 453 LEU B 473 1 21 SHEET 1 A 6 SER A 58 VAL A 62 0 SHEET 2 A 6 ILE A 80 LEU A 85 -1 O ARG A 84 N SER A 58 SHEET 3 A 6 ASN A 157 GLU A 163 -1 O VAL A 158 N LEU A 85 SHEET 4 A 6 THR A 93 HIS A 99 1 N VAL A 94 O ASN A 157 SHEET 5 A 6 TYR A 190 ILE A 193 1 O TYR A 190 N CYS A 95 SHEET 6 A 6 ASN A 431 LEU A 434 1 O ASN A 431 N VAL A 191 SHEET 1 B 2 LYS A 66 LYS A 68 0 SHEET 2 B 2 GLU A 74 PRO A 76 -1 O ILE A 75 N GLN A 67 SHEET 1 C 3 VAL A 119 ARG A 121 0 SHEET 2 C 3 LYS A 124 TYR A 126 -1 O TYR A 126 N VAL A 119 SHEET 3 C 3 LYS A 450 ASN A 452 -1 O LEU A 451 N LEU A 125 SHEET 1 D 3 TRP A 385 VAL A 386 0 SHEET 2 D 3 CYS A 205 LEU A 210 -1 N LEU A 210 O TRP A 385 SHEET 3 D 3 ASP A 410 GLU A 414 1 O ASP A 410 N ILE A 206 SHEET 1 E 4 SER A 313 GLU A 320 0 SHEET 2 E 4 LYS A 335 LEU A 344 -1 O LYS A 339 N HIS A 317 SHEET 3 E 4 GLY A 212 GLU A 221 -1 N GLY A 212 O LEU A 344 SHEET 4 E 4 GLU A 373 GLY A 382 -1 O LYS A 375 N GLU A 219 SHEET 1 F 2 LEU A 227 HIS A 228 0 SHEET 2 F 2 VAL A 331 ILE A 332 -1 O ILE A 332 N LEU A 227 SHEET 1 G 6 SER B 58 VAL B 62 0 SHEET 2 G 6 ILE B 80 LEU B 85 -1 O LEU B 82 N GLU B 60 SHEET 3 G 6 ASN B 157 GLU B 163 -1 O LEU B 162 N LEU B 81 SHEET 4 G 6 THR B 93 HIS B 99 1 N VAL B 94 O ARG B 159 SHEET 5 G 6 TYR B 190 ILE B 193 1 O TYR B 190 N CYS B 95 SHEET 6 G 6 ASN B 431 LEU B 434 1 O ASN B 431 N VAL B 191 SHEET 1 H 2 LYS B 66 LYS B 68 0 SHEET 2 H 2 GLU B 74 PRO B 76 -1 O ILE B 75 N GLN B 67 SHEET 1 I 3 VAL B 119 ARG B 121 0 SHEET 2 I 3 LYS B 124 TYR B 126 -1 O TYR B 126 N VAL B 119 SHEET 3 I 3 LYS B 450 ASN B 452 -1 O LEU B 451 N LEU B 125 SHEET 1 J 3 TRP B 385 VAL B 386 0 SHEET 2 J 3 CYS B 205 LEU B 210 -1 N LEU B 210 O TRP B 385 SHEET 3 J 3 ASP B 410 GLU B 414 1 O ASP B 410 N ILE B 206 SHEET 1 K 4 SER B 313 GLU B 320 0 SHEET 2 K 4 LYS B 335 LEU B 344 -1 O VAL B 337 N GLU B 320 SHEET 3 K 4 GLY B 212 GLU B 221 -1 N PHE B 216 O PHE B 340 SHEET 4 K 4 GLU B 373 GLY B 382 -1 O TYR B 377 N PHE B 217 SHEET 1 L 2 LEU B 227 HIS B 228 0 SHEET 2 L 2 VAL B 331 ILE B 332 -1 O ILE B 332 N LEU B 227 LINK NE2 HIS A 99 MN MN A 502 1555 1555 2.38 LINK OD2 ASP A 132 MN MN A 502 1555 1555 2.14 LINK OD1 ASP A 132 MN MN A 503 1555 1555 2.26 LINK OE2 GLU A 167 MN MN A 503 1555 1555 2.15 LINK OE1 GLU A 167 MN MN A 503 1555 1555 2.28 LINK OD1 ASP A 195 MN MN A 502 1555 1555 2.22 LINK OD2 ASP A 195 MN MN A 502 1555 1555 2.25 LINK NE2 HIS A 445 MN MN A 503 1555 1555 2.60 LINK O2 BES A 501 MN MN A 502 1555 1555 1.83 LINK N2 BES A 501 MN MN A 502 1555 1555 2.16 LINK O3 BES A 501 MN MN A 503 1555 1555 2.05 LINK O2 BES A 501 MN MN A 503 1555 1555 2.56 LINK NE2 HIS B 99 MN MN B 502 1555 1555 2.30 LINK OD2 ASP B 132 MN MN B 502 1555 1555 2.11 LINK OD1 ASP B 132 MN MN B 503 1555 1555 2.18 LINK OE2 GLU B 167 MN MN B 503 1555 1555 2.14 LINK OE1 GLU B 167 MN MN B 503 1555 1555 2.32 LINK OD1 ASP B 195 MN MN B 502 1555 1555 2.14 LINK OD2 ASP B 195 MN MN B 502 1555 1555 2.18 LINK NE2 HIS B 445 MN MN B 503 1555 1555 1.89 LINK O2 BES B 501 MN MN B 502 1555 1555 2.12 LINK N2 BES B 501 MN MN B 502 1555 1555 2.21 LINK O2 BES B 501 MN MN B 503 1555 1555 2.22 LINK O3 BES B 501 MN MN B 503 1555 1555 2.26 CISPEP 1 ASP A 132 ASP A 133 0 11.02 CISPEP 2 ASP B 132 ASP B 133 0 5.27 SITE 1 AC1 16 HIS A 99 ASP A 132 GLU A 166 GLU A 167 SITE 2 AC1 16 ASP A 195 ARG A 343 HIS A 380 GLU A 414 SITE 3 AC1 16 GLY A 416 SER A 417 HIS A 445 MN A 502 SITE 4 AC1 16 MN A 503 HIS B 228 VAL B 231 THR B 330 SITE 1 AC2 6 HIS A 99 ASP A 132 GLU A 167 ASP A 195 SITE 2 AC2 6 BES A 501 MN A 503 SITE 1 AC3 5 ASP A 132 GLU A 167 HIS A 445 BES A 501 SITE 2 AC3 5 MN A 502 SITE 1 AC4 18 HIS A 228 VAL A 231 THR A 330 HIS B 99 SITE 2 AC4 18 ASP B 132 GLU B 166 GLU B 167 ASP B 195 SITE 3 AC4 18 ASN B 196 TYR B 197 ARG B 343 GLU B 414 SITE 4 AC4 18 GLY B 416 SER B 417 ILE B 418 HIS B 445 SITE 5 AC4 18 MN B 502 MN B 503 SITE 1 AC5 6 HIS B 99 ASP B 132 GLU B 166 ASP B 195 SITE 2 AC5 6 BES B 501 MN B 503 SITE 1 AC6 5 ASP B 132 GLU B 167 HIS B 445 BES B 501 SITE 2 AC6 5 MN B 502 SITE 1 AC7 8 ASP B 226 GLY B 321 ALA B 322 PHE B 323 SITE 2 AC7 8 LYS B 329 VAL B 331 PRO B 333 HOH B 684 SITE 1 AC8 6 LYS B 181 PHE B 185 LYS B 186 VAL B 188 SITE 2 AC8 6 THR B 428 LYS B 430 CRYST1 87.090 100.070 105.830 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011482 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009449 0.00000