PDB Short entry for 4RVT HEADER TRANSFERASE/TRANSFERASE INHIBITOR 27-NOV-14 4RVT TITLE MAP4K4 IN COMPLEX WITH A PYRIDIN-2(1H)-ONE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 1-325); COMPND 5 SYNONYM: HPK/GCK-LIKE KINASE HGK, MAPK/ERK KINASE KINASE KINASE 4, COMPND 6 MEK KINASE KINASE 4, MEKKK 4, NCK-INTERACTING KINASE; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HGK, KIAA0687, MAP4K4, NIK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PIEX/BAC3 KEYWDS PYRIDIN-2(1H)-ONE LIGAND, TYPE I, DFG-IN, SERINE/THREONINE KINASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.RICHTERS,C.BECKER,S.KLEINE,D.RAUH REVDAT 3 20-SEP-23 4RVT 1 REMARK SEQADV REVDAT 2 21-OCT-15 4RVT 1 JRNL REMARK REVDAT 1 27-MAY-15 4RVT 0 JRNL AUTH P.SCHRODER,T.FORSTER,S.KLEINE,C.BECKER,A.RICHTERS,S.ZIEGLER, JRNL AUTH 2 D.RAUH,K.KUMAR,H.WALDMANN JRNL TITL NEURITOGENIC MILITARINONE-INSPIRED 4-HYDROXYPYRIDONES TARGET JRNL TITL 2 THE STRESS PATHWAY KINASE MAP4K4. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 54 12398 2015 JRNL REFN ISSN 1433-7851 JRNL PMID 25908259 JRNL DOI 10.1002/ANIE.201501515 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1319 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1825 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4585 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.444 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.236 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.405 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4750 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6442 ; 1.225 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 577 ; 5.872 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;39.148 ;23.981 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 811 ;17.998 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.453 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 706 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3595 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2317 ; 2.561 ; 5.401 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2891 ; 4.121 ; 8.080 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2433 ; 2.870 ; 5.577 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4RVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.007180 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMIC BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26382 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.470 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.01200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: PDB ENTRY 4U43 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 14% V/V PEG 8000, PH 6.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.99500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.48500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.48500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.99500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 ILE A 13 REMARK 465 ASP A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 GLU A 64 REMARK 465 SER A 175 REMARK 465 ALA A 176 REMARK 465 GLN A 177 REMARK 465 LEU A 178 REMARK 465 ASP A 179 REMARK 465 ARG A 180 REMARK 465 THR A 181 REMARK 465 VAL A 182 REMARK 465 GLY A 183 REMARK 465 ARG A 184 REMARK 465 ARG A 185 REMARK 465 ARG A 310 REMARK 465 LYS A 311 REMARK 465 LYS A 312 REMARK 465 ARG A 313 REMARK 465 GLY A 314 REMARK 465 GLU A 315 REMARK 465 LYS A 316 REMARK 465 ASP A 317 REMARK 465 GLU A 318 REMARK 465 THR A 319 REMARK 465 GLU A 320 REMARK 465 TYR A 321 REMARK 465 GLU A 322 REMARK 465 TYR A 323 REMARK 465 SER A 324 REMARK 465 GLY A 325 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 PRO B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 VAL B 11 REMARK 465 ASP B 12 REMARK 465 GLY B 96 REMARK 465 HIS B 97 REMARK 465 LYS B 312 REMARK 465 ARG B 313 REMARK 465 GLY B 314 REMARK 465 GLU B 315 REMARK 465 LYS B 316 REMARK 465 ASP B 317 REMARK 465 GLU B 318 REMARK 465 THR B 319 REMARK 465 GLU B 320 REMARK 465 TYR B 321 REMARK 465 GLU B 322 REMARK 465 TYR B 323 REMARK 465 SER B 324 REMARK 465 GLY B 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 HIS B 148 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 252 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 296 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 297 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 76 OD1 ASP B 171 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 42.87 38.84 REMARK 500 THR A 59 -19.13 -158.63 REMARK 500 ILE A 66 75.94 -158.27 REMARK 500 LYS A 67 -13.06 77.75 REMARK 500 PRO A 94 158.35 -27.21 REMARK 500 PRO A 95 -64.86 -21.48 REMARK 500 ASN A 123 57.01 36.24 REMARK 500 ASP A 153 46.60 -157.75 REMARK 500 ASN A 164 1.47 -60.93 REMARK 500 ASP A 171 67.44 61.54 REMARK 500 ALA A 208 95.82 18.73 REMARK 500 PRO A 293 33.27 -80.02 REMARK 500 ARG A 308 2.34 -58.00 REMARK 500 PRO B 94 101.39 -20.84 REMARK 500 GLU B 106 135.13 -39.94 REMARK 500 ASN B 119 39.39 -88.94 REMARK 500 ARG B 152 -15.84 87.67 REMARK 500 ASP B 153 53.48 -146.25 REMARK 500 PHE B 172 34.78 -98.10 REMARK 500 ALA B 230 148.08 -172.78 REMARK 500 PRO B 232 150.68 -45.39 REMARK 500 LEU B 270 50.82 -96.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3XM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 402 DBREF 4RVT A 1 325 UNP O95819 M4K4_HUMAN 1 325 DBREF 4RVT B 1 325 UNP O95819 M4K4_HUMAN 1 325 SEQADV 4RVT GLY A -2 UNP O95819 EXPRESSION TAG SEQADV 4RVT SER A -1 UNP O95819 EXPRESSION TAG SEQADV 4RVT HIS A 0 UNP O95819 EXPRESSION TAG SEQADV 4RVT GLY B -2 UNP O95819 EXPRESSION TAG SEQADV 4RVT SER B -1 UNP O95819 EXPRESSION TAG SEQADV 4RVT HIS B 0 UNP O95819 EXPRESSION TAG SEQRES 1 A 328 GLY SER HIS MET ALA ASN ASP SER PRO ALA LYS SER LEU SEQRES 2 A 328 VAL ASP ILE ASP LEU SER SER LEU ARG ASP PRO ALA GLY SEQRES 3 A 328 ILE PHE GLU LEU VAL GLU VAL VAL GLY ASN GLY THR TYR SEQRES 4 A 328 GLY GLN VAL TYR LYS GLY ARG HIS VAL LYS THR GLY GLN SEQRES 5 A 328 LEU ALA ALA ILE LYS VAL MET ASP VAL THR GLU ASP GLU SEQRES 6 A 328 GLU GLU GLU ILE LYS LEU GLU ILE ASN MET LEU LYS LYS SEQRES 7 A 328 TYR SER HIS HIS ARG ASN ILE ALA THR TYR TYR GLY ALA SEQRES 8 A 328 PHE ILE LYS LYS SER PRO PRO GLY HIS ASP ASP GLN LEU SEQRES 9 A 328 TRP LEU VAL MET GLU PHE CYS GLY ALA GLY SER ILE THR SEQRES 10 A 328 ASP LEU VAL LYS ASN THR LYS GLY ASN THR LEU LYS GLU SEQRES 11 A 328 ASP TRP ILE ALA TYR ILE SER ARG GLU ILE LEU ARG GLY SEQRES 12 A 328 LEU ALA HIS LEU HIS ILE HIS HIS VAL ILE HIS ARG ASP SEQRES 13 A 328 ILE LYS GLY GLN ASN VAL LEU LEU THR GLU ASN ALA GLU SEQRES 14 A 328 VAL LYS LEU VAL ASP PHE GLY VAL SER ALA GLN LEU ASP SEQRES 15 A 328 ARG THR VAL GLY ARG ARG ASN THR PHE ILE GLY THR PRO SEQRES 16 A 328 TYR TRP MET ALA PRO GLU VAL ILE ALA CYS ASP GLU ASN SEQRES 17 A 328 PRO ASP ALA THR TYR ASP TYR ARG SER ASP LEU TRP SER SEQRES 18 A 328 CYS GLY ILE THR ALA ILE GLU MET ALA GLU GLY ALA PRO SEQRES 19 A 328 PRO LEU CYS ASP MET HIS PRO MET ARG ALA LEU PHE LEU SEQRES 20 A 328 ILE PRO ARG ASN PRO PRO PRO ARG LEU LYS SER LYS LYS SEQRES 21 A 328 TRP SER LYS LYS PHE PHE SER PHE ILE GLU GLY CYS LEU SEQRES 22 A 328 VAL LYS ASN TYR MET GLN ARG PRO SER THR GLU GLN LEU SEQRES 23 A 328 LEU LYS HIS PRO PHE ILE ARG ASP GLN PRO ASN GLU ARG SEQRES 24 A 328 GLN VAL ARG ILE GLN LEU LYS ASP HIS ILE ASP ARG THR SEQRES 25 A 328 ARG LYS LYS ARG GLY GLU LYS ASP GLU THR GLU TYR GLU SEQRES 26 A 328 TYR SER GLY SEQRES 1 B 328 GLY SER HIS MET ALA ASN ASP SER PRO ALA LYS SER LEU SEQRES 2 B 328 VAL ASP ILE ASP LEU SER SER LEU ARG ASP PRO ALA GLY SEQRES 3 B 328 ILE PHE GLU LEU VAL GLU VAL VAL GLY ASN GLY THR TYR SEQRES 4 B 328 GLY GLN VAL TYR LYS GLY ARG HIS VAL LYS THR GLY GLN SEQRES 5 B 328 LEU ALA ALA ILE LYS VAL MET ASP VAL THR GLU ASP GLU SEQRES 6 B 328 GLU GLU GLU ILE LYS LEU GLU ILE ASN MET LEU LYS LYS SEQRES 7 B 328 TYR SER HIS HIS ARG ASN ILE ALA THR TYR TYR GLY ALA SEQRES 8 B 328 PHE ILE LYS LYS SER PRO PRO GLY HIS ASP ASP GLN LEU SEQRES 9 B 328 TRP LEU VAL MET GLU PHE CYS GLY ALA GLY SER ILE THR SEQRES 10 B 328 ASP LEU VAL LYS ASN THR LYS GLY ASN THR LEU LYS GLU SEQRES 11 B 328 ASP TRP ILE ALA TYR ILE SER ARG GLU ILE LEU ARG GLY SEQRES 12 B 328 LEU ALA HIS LEU HIS ILE HIS HIS VAL ILE HIS ARG ASP SEQRES 13 B 328 ILE LYS GLY GLN ASN VAL LEU LEU THR GLU ASN ALA GLU SEQRES 14 B 328 VAL LYS LEU VAL ASP PHE GLY VAL SER ALA GLN LEU ASP SEQRES 15 B 328 ARG THR VAL GLY ARG ARG ASN THR PHE ILE GLY THR PRO SEQRES 16 B 328 TYR TRP MET ALA PRO GLU VAL ILE ALA CYS ASP GLU ASN SEQRES 17 B 328 PRO ASP ALA THR TYR ASP TYR ARG SER ASP LEU TRP SER SEQRES 18 B 328 CYS GLY ILE THR ALA ILE GLU MET ALA GLU GLY ALA PRO SEQRES 19 B 328 PRO LEU CYS ASP MET HIS PRO MET ARG ALA LEU PHE LEU SEQRES 20 B 328 ILE PRO ARG ASN PRO PRO PRO ARG LEU LYS SER LYS LYS SEQRES 21 B 328 TRP SER LYS LYS PHE PHE SER PHE ILE GLU GLY CYS LEU SEQRES 22 B 328 VAL LYS ASN TYR MET GLN ARG PRO SER THR GLU GLN LEU SEQRES 23 B 328 LEU LYS HIS PRO PHE ILE ARG ASP GLN PRO ASN GLU ARG SEQRES 24 B 328 GLN VAL ARG ILE GLN LEU LYS ASP HIS ILE ASP ARG THR SEQRES 25 B 328 ARG LYS LYS ARG GLY GLU LYS ASP GLU THR GLU TYR GLU SEQRES 26 B 328 TYR SER GLY HET 3XM A 401 22 HET MES A 402 12 HETNAM 3XM 3-HEXANOYL-4-HYDROXY-5-(4-HYDROXYPHENYL)PYRIDIN-2(1H)- HETNAM 2 3XM ONE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 3XM C17 H19 N O4 FORMUL 4 MES C6 H13 N O4 S FORMUL 5 HOH *76(H2 O) HELIX 1 1 ASP A 14 LEU A 18 5 5 HELIX 2 2 GLY A 32 THR A 35 5 4 HELIX 3 3 LEU A 68 SER A 77 1 10 HELIX 4 4 ILE A 113 THR A 120 1 8 HELIX 5 5 LYS A 126 HIS A 147 1 22 HELIX 6 6 ALA A 196 ILE A 200 5 5 HELIX 7 7 ARG A 213 GLY A 229 1 17 HELIX 8 8 HIS A 237 ASN A 248 1 12 HELIX 9 9 SER A 259 LEU A 270 1 12 HELIX 10 10 ASN A 273 ARG A 277 5 5 HELIX 11 11 SER A 279 LYS A 285 1 7 HELIX 12 12 HIS A 286 ASP A 291 1 6 HELIX 13 13 ASN A 294 ARG A 308 1 15 HELIX 14 14 THR B 59 LEU B 73 1 15 HELIX 15 15 SER B 112 ASN B 119 1 8 HELIX 16 16 THR B 120 THR B 124 5 5 HELIX 17 17 LYS B 126 HIS B 147 1 22 HELIX 18 18 LYS B 155 GLN B 157 5 3 HELIX 19 19 GLN B 177 VAL B 182 1 6 HELIX 20 20 ALA B 196 ILE B 200 5 5 HELIX 21 21 ASP B 211 GLY B 229 1 19 HELIX 22 22 HIS B 237 ILE B 245 1 9 HELIX 23 23 SER B 259 LEU B 270 1 12 HELIX 24 24 ASN B 273 ARG B 277 5 5 HELIX 25 25 SER B 279 LYS B 285 1 7 HELIX 26 26 HIS B 286 ASP B 291 1 6 HELIX 27 27 ASN B 294 ARG B 310 1 17 SHEET 1 A 5 PHE A 25 VAL A 30 0 SHEET 2 A 5 VAL A 39 HIS A 44 -1 O LYS A 41 N GLU A 29 SHEET 3 A 5 LEU A 50 ASP A 57 -1 O ALA A 51 N GLY A 42 SHEET 4 A 5 GLN A 100 MET A 105 -1 O MET A 105 N ALA A 52 SHEET 5 A 5 TYR A 85 LYS A 91 -1 N PHE A 89 O TRP A 102 SHEET 1 B 3 GLY A 111 SER A 112 0 SHEET 2 B 3 VAL A 159 LEU A 161 -1 O LEU A 161 N GLY A 111 SHEET 3 B 3 VAL A 167 LEU A 169 -1 O LYS A 168 N LEU A 160 SHEET 1 C 6 LEU B 18 ARG B 19 0 SHEET 2 C 6 TYR B 85 LYS B 91 1 O ILE B 90 N ARG B 19 SHEET 3 C 6 ASP B 99 GLU B 106 -1 O VAL B 104 N TYR B 86 SHEET 4 C 6 LEU B 50 VAL B 58 -1 N MET B 56 O LEU B 101 SHEET 5 C 6 TYR B 36 HIS B 44 -1 N TYR B 40 O ILE B 53 SHEET 6 C 6 PHE B 25 LEU B 27 -1 N GLU B 26 O ARG B 43 SHEET 1 D 2 VAL B 159 LEU B 161 0 SHEET 2 D 2 VAL B 167 LEU B 169 -1 O LYS B 168 N LEU B 160 CISPEP 1 ILE A 66 LYS A 67 0 -8.02 CISPEP 2 PRO A 95 GLY A 96 0 3.88 SITE 1 AC1 8 TYR A 36 VAL A 39 ALA A 52 GLU A 106 SITE 2 AC1 8 PHE A 107 CYS A 108 GLY A 109 LEU A 160 SITE 1 AC2 5 MET A 275 GLN A 276 GLN A 282 MET B 275 SITE 2 AC2 5 GLN B 276 CRYST1 79.990 90.250 90.970 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012502 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010993 0.00000