PDB Short entry for 4TMU HEADER HYDROLASE/DNA 02-JUN-14 4TMU TITLE CRYSTAL STRUCTURE OF RECQ CATALYTIC CORE FROM C. SAKAZAKII BOUND TO TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECQ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: EXACT C-TERMINUS NOT DEFINED, THE HRDC DOMAIN WAS COMPND 6 REMOVED WITH THROMBIN.; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (29-MER); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRONOBACTER SAKAZAKII; SOURCE 3 ORGANISM_TAXID: 290339; SOURCE 4 STRAIN: ATCC BAA-894; SOURCE 5 GENE: ESA_03738; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS RECQ, HELICASE, WINGED HELIX, ATP BINDING, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.A.MANTHEI,J.L.KECK REVDAT 6 27-DEC-23 4TMU 1 REMARK REVDAT 5 01-JAN-20 4TMU 1 SOURCE JRNL REMARK REVDAT 4 22-APR-15 4TMU 1 JRNL REVDAT 3 15-APR-15 4TMU 1 JRNL REVDAT 2 25-MAR-15 4TMU 1 JRNL REVDAT 1 11-MAR-15 4TMU 0 JRNL AUTH K.A.MANTHEI,M.C.HILL,J.E.BURKE,S.E.BUTCHER,J.L.KECK JRNL TITL STRUCTURAL MECHANISMS OF DNA BINDING AND UNWINDING IN JRNL TITL 2 BACTERIAL RECQ HELICASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 4292 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 25831501 JRNL DOI 10.1073/PNAS.1416746112 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1972 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4010 REMARK 3 NUCLEIC ACID ATOMS : 594 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.99000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 3.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.757 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4748 ; 0.009 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 4290 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6547 ; 1.242 ; 1.842 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9838 ; 0.856 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 5.988 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;35.067 ;23.300 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 703 ;16.990 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;16.274 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 698 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5041 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1112 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2043 ; 2.590 ; 4.357 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2042 ; 2.590 ; 4.356 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2552 ; 4.202 ; 6.528 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2553 ; 4.201 ; 6.530 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2705 ; 3.415 ; 6.069 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2704 ; 3.413 ; 6.066 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3995 ; 5.627 ; 9.014 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5865 ; 8.962 ;46.176 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5756 ; 8.866 ;46.191 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29764 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70 MM NAOAC, 24% GLYCEROL, 11% PEG REMARK 280 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.17400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.97950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.17400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.97950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 VAL A 515 REMARK 465 ALA A 516 REMARK 465 ALA A 517 REMARK 465 LEU A 518 REMARK 465 LYS A 519 REMARK 465 PRO A 520 REMARK 465 ARG A 521 REMARK 465 DC B 1 REMARK 465 DG B 2 REMARK 465 DT B 12 REMARK 465 DA B 13 REMARK 465 DT B 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 726 O HOH A 772 2.08 REMARK 500 SG CYS A 56 O HOH A 861 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 -72.15 -74.97 REMARK 500 ASP A 157 -62.57 -148.08 REMARK 500 ASP A 200 60.76 32.05 REMARK 500 LYS A 222 77.41 -117.99 REMARK 500 ARG A 259 6.91 -69.82 REMARK 500 SER A 262 95.53 -65.34 REMARK 500 ASN A 301 74.00 -107.04 REMARK 500 ASN A 399 52.78 -148.36 REMARK 500 TYR A 458 109.33 -55.32 REMARK 500 GLN A 488 64.70 -106.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 910 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 133 DISTANCE = 8.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 380 SG REMARK 620 2 CYS A 397 SG 96.4 REMARK 620 3 CYS A 400 SG 119.1 115.3 REMARK 620 4 CYS A 403 SG 106.4 116.8 103.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 DBREF 4TMU A 1 521 UNP A7MQK9 A7MQK9_CROS8 1 521 DBREF 4TMU B 1 34 PDB 4TMU 4TMU 1 34 SEQADV 4TMU MET A -19 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU GLY A -18 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU SER A -17 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU SER A -16 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU HIS A -15 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU HIS A -14 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU HIS A -13 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU HIS A -12 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU HIS A -11 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU HIS A -10 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU SER A -9 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU SER A -8 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU GLY A -7 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU LEU A -6 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU VAL A -5 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU PRO A -4 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU ARG A -3 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU GLY A -2 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU SER A -1 UNP A7MQK9 EXPRESSION TAG SEQADV 4TMU HIS A 0 UNP A7MQK9 EXPRESSION TAG SEQRES 1 A 541 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 541 LEU VAL PRO ARG GLY SER HIS MET ALA GLN ALA GLU VAL SEQRES 3 A 541 TYR SER GLN GLU THR LEU ALA LYS GLN VAL LEU GLN GLU SEQRES 4 A 541 THR PHE GLY TYR GLN GLN PHE ARG PRO GLY GLN ALA THR SEQRES 5 A 541 ILE ILE ASP ALA VAL LEU GLU GLY ARG ASP CYS LEU VAL SEQRES 6 A 541 VAL MET PRO THR GLY GLY GLY LYS SER LEU CYS TYR GLN SEQRES 7 A 541 ILE PRO ALA LEU VAL LYS THR GLY LEU THR ILE VAL VAL SEQRES 8 A 541 SER PRO LEU ILE SER LEU MET LYS ASP GLN VAL ASP GLN SEQRES 9 A 541 LEU LEU ALA ASN GLY VAL ALA ALA ALA CYS LEU ASN SER SEQRES 10 A 541 THR GLN SER ARG GLU GLU GLN GLN ALA VAL LEU ALA GLY SEQRES 11 A 541 CYS ARG THR GLY GLN VAL ARG LEU LEU TYR ILE ALA PRO SEQRES 12 A 541 GLU ARG LEU MET MET ASP ASN PHE ILE ASP THR LEU GLY SEQRES 13 A 541 TYR TRP ASP LEU ALA MET VAL ALA VAL ASP GLU ALA HIS SEQRES 14 A 541 CYS ILE SER GLN TRP GLY HIS ASP PHE ARG PRO GLU TYR SEQRES 15 A 541 ALA ALA LEU GLY GLN LEU ARG ALA ARG PHE PRO ALA VAL SEQRES 16 A 541 PRO PHE MET ALA LEU THR ALA THR ALA ASP ASP THR THR SEQRES 17 A 541 ARG ARG ASP ILE VAL ARG LEU LEU GLY LEU ASP ASP PRO SEQRES 18 A 541 LEU ILE GLU ILE SER SER PHE ASP ARG PRO ASN ILE ARG SEQRES 19 A 541 TYR MET LEU MET GLU LYS PHE LYS PRO LEU ASP GLN LEU SEQRES 20 A 541 MET ARG TYR VAL GLN GLU GLN ARG GLY LYS SER GLY ILE SEQRES 21 A 541 ILE TYR CYS ASN SER ARG ALA LYS VAL GLU ASP THR ALA SEQRES 22 A 541 ALA ARG LEU GLN SER ARG GLY ILE SER ALA ALA ALA TYR SEQRES 23 A 541 HIS ALA GLY LEU GLU HIS GLU VAL ARG ALA SER VAL GLN SEQRES 24 A 541 GLU LYS PHE GLN ARG ASP ASP LEU GLN ILE VAL VAL ALA SEQRES 25 A 541 THR VAL ALA PHE GLY MET GLY ILE ASN LYS PRO ASN VAL SEQRES 26 A 541 ARG PHE VAL VAL HIS PHE ASP ILE PRO ARG ASN ILE GLU SEQRES 27 A 541 SER TYR TYR GLN GLU THR GLY ARG ALA GLY ARG ASP GLY SEQRES 28 A 541 LEU PRO ALA GLU ALA MET LEU PHE TYR ASP PRO ALA ASP SEQRES 29 A 541 MET ALA TRP LEU ARG ARG CYS LEU GLU GLU LYS ALA PRO SEQRES 30 A 541 GLY PRO LEU GLN ASP ILE GLU ARG HIS LYS LEU ASN ALA SEQRES 31 A 541 MET GLY ALA PHE ALA GLU ALA GLN THR CYS ARG ARG LEU SEQRES 32 A 541 VAL LEU LEU ASN TYR PHE GLY GLU GLY ARG GLN ALA PRO SEQRES 33 A 541 CYS GLY ASN CYS ASP ILE CYS LEU ASP PRO PRO ARG ARG SEQRES 34 A 541 TYR ASP GLY LEU VAL ASP ALA GLN LYS ALA LEU SER ALA SEQRES 35 A 541 ILE ALA ARG VAL GLU GLN ARG PHE GLY MET GLY TYR VAL SEQRES 36 A 541 VAL GLU VAL LEU ARG GLY ALA ASN ASN GLN ARG ILE ARG SEQRES 37 A 541 GLU LEU GLY HIS ASP LYS LEU LYS VAL TYR GLY ILE GLY SEQRES 38 A 541 ARG ASP GLN SER GLN GLU HIS TRP VAL SER VAL ILE ARG SEQRES 39 A 541 GLN LEU ILE HIS LEU GLY VAL VAL THR GLN ASN ILE ALA SEQRES 40 A 541 GLN HIS SER ALA LEU GLN LEU THR GLU ALA ALA ARG PRO SEQRES 41 A 541 PHE LEU ARG GLY GLU ALA PRO LEU MET LEU ALA VAL PRO SEQRES 42 A 541 ARG VAL ALA ALA LEU LYS PRO ARG SEQRES 1 B 34 DC DG DG DT DA DG DA DA DT DT DG DT DA SEQRES 2 B 34 DA DA DA DT DT DC DT DA DC DC DG DG DT SEQRES 3 B 34 DG DC DC DT DT DA DC DT HET ZN A 601 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *302(H2 O) HELIX 1 AA1 ALA A 4 THR A 20 1 17 HELIX 2 AA2 GLY A 29 GLU A 39 1 11 HELIX 3 AA3 SER A 54 LYS A 64 1 11 HELIX 4 AA4 LEU A 74 ASN A 88 1 15 HELIX 5 AA5 SER A 100 THR A 113 1 14 HELIX 6 AA6 ALA A 122 MET A 127 1 6 HELIX 7 AA7 MET A 128 TYR A 137 1 10 HELIX 8 AA8 ALA A 148 GLY A 155 1 8 HELIX 9 AA9 ARG A 159 ALA A 163 5 5 HELIX 10 AB1 ALA A 164 PHE A 172 1 9 HELIX 11 AB2 ASP A 185 GLY A 197 1 13 HELIX 12 AB3 LYS A 222 GLN A 234 1 13 HELIX 13 AB4 SER A 245 ARG A 259 1 15 HELIX 14 AB5 GLU A 271 ARG A 284 1 14 HELIX 15 AB6 ASN A 316 GLY A 325 1 10 HELIX 16 AB7 ASP A 341 GLU A 353 1 13 HELIX 17 AB8 GLY A 358 GLU A 376 1 19 HELIX 18 AB9 CYS A 380 PHE A 389 1 10 HELIX 19 AC1 CYS A 400 ASP A 405 1 6 HELIX 20 AC2 GLY A 412 VAL A 426 1 15 HELIX 21 AC3 GLY A 431 ARG A 440 1 10 HELIX 22 AC4 ASN A 444 GLY A 451 1 8 HELIX 23 AC5 SER A 465 LEU A 479 1 15 HELIX 24 AC6 ILE A 486 HIS A 489 5 4 HELIX 25 AC7 ALA A 497 GLY A 504 1 8 SHEET 1 AA1 7 ALA A 92 CYS A 94 0 SHEET 2 AA1 7 LEU A 118 ILE A 121 1 O TYR A 120 N ALA A 93 SHEET 3 AA1 7 LEU A 67 VAL A 71 1 N VAL A 70 O LEU A 119 SHEET 4 AA1 7 LEU A 140 VAL A 145 1 O ALA A 144 N ILE A 69 SHEET 5 AA1 7 PHE A 177 THR A 181 1 O MET A 178 N VAL A 145 SHEET 6 AA1 7 CYS A 43 VAL A 46 1 N VAL A 45 O ALA A 179 SHEET 7 AA1 7 LEU A 202 ILE A 205 1 O LEU A 202 N LEU A 44 SHEET 1 AA2 6 ILE A 213 GLU A 219 0 SHEET 2 AA2 6 ALA A 334 TYR A 340 1 O LEU A 338 N MET A 218 SHEET 3 AA2 6 PHE A 307 HIS A 310 1 N HIS A 310 O PHE A 339 SHEET 4 AA2 6 GLY A 239 TYR A 242 1 N TYR A 242 O VAL A 309 SHEET 5 AA2 6 ILE A 289 ALA A 292 1 O ALA A 292 N ILE A 241 SHEET 6 AA2 6 ALA A 263 TYR A 266 1 N ALA A 264 O VAL A 291 SHEET 1 AA3 2 ARG A 409 ASP A 411 0 SHEET 2 AA3 2 MET A 509 ALA A 511 -1 O LEU A 510 N TYR A 410 SHEET 1 AA4 2 VAL A 482 GLN A 484 0 SHEET 2 AA4 2 LEU A 492 LEU A 494 -1 O GLN A 493 N THR A 483 LINK SG CYS A 380 ZN ZN A 601 1555 1555 2.32 LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.32 LINK SG CYS A 400 ZN ZN A 601 1555 1555 2.33 LINK SG CYS A 403 ZN ZN A 601 1555 1555 2.38 CISPEP 1 GLY A 50 GLY A 51 0 -12.74 SITE 1 AC1 4 CYS A 380 CYS A 397 CYS A 400 CYS A 403 CRYST1 78.348 93.959 100.160 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012764 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009984 0.00000