PDB Short entry for 4TQS HEADER TRANSFERASE/DNA 11-JUN-14 4TQS TITLE TERNARY COMPLEX OF Y-FAMILY DNA POLYMERASE DPO4 WITH (5'S)-8,5'-CYCLO- TITLE 2 2'-DEOXYGUANOSINE AND DCTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3'); COMPND 9 CHAIN: C, P; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*TP*CP*AP*CP*(2LF) COMPND 13 P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'); COMPND 14 CHAIN: D, T; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: ATCC 35092 / DSM 1617 / JCM 11322 / P2; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS Y-FAMILY DNA POLYMERASE, DNA DAMAGE, CYCLOPURINE, TRANSLESION DNA KEYWDS 2 SYNTHESIS, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.ZHAO REVDAT 6 27-DEC-23 4TQS 1 LINK REVDAT 5 30-OCT-19 4TQS 1 REMARK LINK SITE ATOM REVDAT 4 22-NOV-17 4TQS 1 SOURCE KEYWDS JRNL REMARK REVDAT 3 04-FEB-15 4TQS 1 JRNL REVDAT 2 21-JAN-15 4TQS 1 JRNL REVDAT 1 14-JAN-15 4TQS 0 JRNL AUTH W.XU,A.M.OUELLETTE,Z.WAWRZAK,S.J.SHRIVER,S.M.ANDERSON,L.ZHAO JRNL TITL KINETIC AND STRUCTURAL MECHANISMS OF JRNL TITL 2 (5'S)-8,5'-CYCLO-2'-DEOXYGUANOSINE-INDUCED DNA REPLICATION JRNL TITL 3 STALLING. JRNL REF BIOCHEMISTRY V. 54 639 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25569151 JRNL DOI 10.1021/BI5014936 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1690) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 55908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4098 - 5.4844 0.97 2815 121 0.2234 0.2466 REMARK 3 2 5.4844 - 4.3582 0.99 2819 147 0.1985 0.2677 REMARK 3 3 4.3582 - 3.8088 0.99 2867 117 0.1905 0.2040 REMARK 3 4 3.8088 - 3.4612 0.99 2787 144 0.2018 0.2375 REMARK 3 5 3.4612 - 3.2135 0.98 2798 153 0.2027 0.3051 REMARK 3 6 3.2135 - 3.0243 0.98 2838 101 0.2309 0.2944 REMARK 3 7 3.0243 - 2.8730 0.98 2793 131 0.2448 0.2992 REMARK 3 8 2.8730 - 2.7480 0.98 2738 141 0.2511 0.3051 REMARK 3 9 2.7480 - 2.6423 0.98 2852 148 0.2526 0.3266 REMARK 3 10 2.6423 - 2.5512 0.98 2781 140 0.2406 0.3426 REMARK 3 11 2.5512 - 2.4714 0.98 2731 173 0.2391 0.3357 REMARK 3 12 2.4714 - 2.4008 0.99 2827 153 0.2450 0.3219 REMARK 3 13 2.4008 - 2.3377 0.98 2794 151 0.2451 0.3309 REMARK 3 14 2.3377 - 2.2807 0.99 2752 158 0.2483 0.2972 REMARK 3 15 2.2807 - 2.2288 0.99 2805 157 0.2553 0.3068 REMARK 3 16 2.2288 - 2.1814 0.99 2805 124 0.2601 0.3534 REMARK 3 17 2.1814 - 2.1378 0.99 2832 147 0.2655 0.3317 REMARK 3 18 2.1378 - 2.0975 0.99 2789 150 0.2778 0.3204 REMARK 3 19 2.0975 - 2.0600 0.98 2768 161 0.2828 0.3653 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6560 REMARK 3 ANGLE : 1.147 9101 REMARK 3 CHIRALITY : 0.044 1063 REMARK 3 PLANARITY : 0.006 963 REMARK 3 DIHEDRAL : 19.730 2471 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 18.4051 37.8924 34.3369 REMARK 3 T TENSOR REMARK 3 T11: 0.1256 T22: 0.0996 REMARK 3 T33: 0.1447 T12: -0.0052 REMARK 3 T13: 0.0276 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.8673 L22: 0.7279 REMARK 3 L33: 0.7299 L12: -0.2521 REMARK 3 L13: 0.7379 L23: 0.1502 REMARK 3 S TENSOR REMARK 3 S11: 0.0468 S12: 0.0200 S13: -0.0498 REMARK 3 S21: 0.0730 S22: -0.0095 S23: -0.0052 REMARK 3 S31: 0.0020 S32: -0.0455 S33: -0.0460 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -6.6760 -0.7266 30.1501 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.1087 REMARK 3 T33: 0.1119 T12: 0.0087 REMARK 3 T13: -0.0307 T23: -0.0629 REMARK 3 L TENSOR REMARK 3 L11: 0.8610 L22: 1.0851 REMARK 3 L33: 1.8778 L12: -0.0034 REMARK 3 L13: -0.3078 L23: -0.9856 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: -0.1411 S13: -0.0912 REMARK 3 S21: -0.0240 S22: -0.0602 S23: -0.0003 REMARK 3 S31: -0.0896 S32: 0.1616 S33: 0.0046 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' REMARK 3 ORIGIN FOR THE GROUP (A): 7.6078 46.5987 24.3351 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.2956 REMARK 3 T33: 0.5103 T12: 0.1332 REMARK 3 T13: -0.0225 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.4251 L22: 0.3126 REMARK 3 L33: 3.2430 L12: 0.5950 REMARK 3 L13: 0.6238 L23: -0.1404 REMARK 3 S TENSOR REMARK 3 S11: 0.3208 S12: 0.5433 S13: -0.0491 REMARK 3 S21: 0.0384 S22: -0.2739 S23: 0.5941 REMARK 3 S31: -0.2012 S32: -0.2075 S33: 0.0401 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 7.0430 48.8858 25.9986 REMARK 3 T TENSOR REMARK 3 T11: 0.3584 T22: 0.1231 REMARK 3 T33: 0.5566 T12: 0.2463 REMARK 3 T13: 0.0871 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 4.5282 L22: 0.1471 REMARK 3 L33: 0.9639 L12: 0.1091 REMARK 3 L13: 0.7226 L23: 0.3253 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.7401 S13: -0.1201 REMARK 3 S21: -0.0111 S22: 0.1359 S23: 0.4832 REMARK 3 S31: -0.8599 S32: -0.2904 S33: -0.0113 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'T' REMARK 3 ORIGIN FOR THE GROUP (A): 0.3151 -8.5481 42.5866 REMARK 3 T TENSOR REMARK 3 T11: 0.3970 T22: 0.2797 REMARK 3 T33: 0.1053 T12: 0.0160 REMARK 3 T13: -0.0997 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.7549 L22: 3.3162 REMARK 3 L33: 5.3957 L12: -0.5822 REMARK 3 L13: 1.1024 L23: -0.9610 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: -0.2219 S13: -0.2816 REMARK 3 S21: 0.3214 S22: -0.1725 S23: 0.0939 REMARK 3 S31: 0.1947 S32: 0.8817 S33: 0.0538 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000202067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58860 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 28.407 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 220 MICROM DPO4, 264 MICROM PRIMER REMARK 280 -TEMPLATE DNA COMPLEX, 5 MM MGCL2, 1 MM DTTP, 20 MM TRIS-HCL (PH REMARK 280 7.4), 60 MM NACL, 2% GLYCEROL (V/V), AND 5 MM 2-MERCAPTOETHANOL REMARK 280 WERE INCUBATED AT 37 C FOR 5 MIN. DROPLETS (A 1:1 MIXTURE OF REMARK 280 DPO4-DNA COMPLEX MIXTURE AND THE RESERVOIR SOLUTION, V/V) WERE REMARK 280 EQUILIBRATED AGAINST A RESERVOIR SOLUTION CONTAINING 0.1M TRIS- REMARK 280 HCL (PH 7.4), 15% POLYETHYLENE GLYCOL 3350 (W/V), 0.1 M REMARK 280 CA(CH3COO)2, AND 2% GLYCEROL (V/V)., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 92.12100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 ALA B 343 REMARK 465 ILE B 344 REMARK 465 GLY B 345 REMARK 465 LEU B 346 REMARK 465 ASP B 347 REMARK 465 LYS B 348 REMARK 465 PHE B 349 REMARK 465 PHE B 350 REMARK 465 ASP B 351 REMARK 465 THR B 352 REMARK 465 DT D 1 REMARK 465 DC D 2 REMARK 465 DA D 3 REMARK 465 DC D 4 REMARK 465 2LF D 5 REMARK 465 DT T 1 REMARK 465 DC T 2 REMARK 465 DA T 3 REMARK 465 DC T 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 37 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ARG A 230 CZ NH1 NH2 REMARK 470 ASN A 234 CG OD1 ND2 REMARK 470 ARG A 238 CZ NH1 NH2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 248 CG1 CG2 CD1 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 254 CG OD1 ND2 REMARK 470 SER A 255 OG REMARK 470 ARG A 256 NE CZ NH1 NH2 REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 TYR A 274 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LEU A 276 CG CD1 CD2 REMARK 470 ASP A 277 CG OD1 OD2 REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 VAL A 287 CG1 CG2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LEU A 293 CG CD1 CD2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 ARG A 328 CZ NH1 NH2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 2 CG1 CG2 CD1 REMARK 470 PHE B 37 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 136 CG CD OE1 OE2 REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 ASN B 234 CG OD1 ND2 REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 242 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 ARG B 253 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 254 CG OD1 ND2 REMARK 470 SER B 255 OG REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 260 CG CD OE1 OE2 REMARK 470 ASP B 292 CG OD1 OD2 REMARK 470 LEU B 293 CG CD1 CD2 REMARK 470 LYS B 329 CG CD CE NZ REMARK 470 ARG B 331 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 332 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 336 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 342 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 170 NH1 ARG A 173 1.88 REMARK 500 O HOH B 655 O HOH B 659 2.07 REMARK 500 O HOH C 214 O HOH C 223 2.08 REMARK 500 O HOH B 669 O HOH B 679 2.08 REMARK 500 O HOH A 745 O HOH A 760 2.10 REMARK 500 O HOH B 686 O HOH B 690 2.10 REMARK 500 O HOH B 587 O HOH B 618 2.10 REMARK 500 O HOH B 621 O HOH B 690 2.11 REMARK 500 O HOH A 626 O HOH A 733 2.12 REMARK 500 O HOH B 615 O HOH B 687 2.13 REMARK 500 O HOH A 728 O HOH P 203 2.13 REMARK 500 O HOH T 128 O HOH T 129 2.14 REMARK 500 NH2 ARG B 298 OE1 GLU B 325 2.15 REMARK 500 O HOH B 659 O HOH D 108 2.16 REMARK 500 O HOH B 507 O HOH C 203 2.17 REMARK 500 O HOH B 526 O HOH B 624 2.18 REMARK 500 NZ LYS A 98 O HOH A 601 2.19 REMARK 500 O HOH B 545 O HOH B 597 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 775 O HOH C 227 2546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 160 C - N - CD ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 53.89 31.40 REMARK 500 LEU A 23 -39.92 -130.61 REMARK 500 ARG A 36 -127.96 -72.66 REMARK 500 LEU A 68 75.14 -166.11 REMARK 500 ARG A 77 76.70 -119.72 REMARK 500 LYS A 159 -154.90 63.35 REMARK 500 GLU A 232 40.23 -144.01 REMARK 500 ASN A 234 -105.96 -102.97 REMARK 500 GLU A 235 95.09 51.43 REMARK 500 ARG A 253 -97.56 78.20 REMARK 500 ASN A 254 -163.49 65.64 REMARK 500 SER A 255 -120.47 -165.45 REMARK 500 ASP A 277 -125.39 60.58 REMARK 500 ILE A 280 94.14 79.34 REMARK 500 ASP A 292 -159.87 -112.26 REMARK 500 TYR B 10 52.24 31.33 REMARK 500 ARG B 36 -70.08 -57.96 REMARK 500 LEU B 68 66.94 -150.55 REMARK 500 ARG B 77 63.13 -114.83 REMARK 500 ARG B 253 127.48 73.04 REMARK 500 ASP B 277 -112.48 59.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 775 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A 776 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 777 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B 701 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 702 DISTANCE = 8.37 ANGSTROMS REMARK 525 HOH C 228 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 7 OD2 50.1 REMARK 620 3 PHE A 8 O 103.0 83.9 REMARK 620 4 ASP A 105 OD2 64.9 114.1 102.8 REMARK 620 5 DCP A 401 O2A 87.4 112.1 164.0 70.4 REMARK 620 6 DCP A 401 O2B 145.2 162.0 97.2 83.2 68.0 REMARK 620 7 DCP A 401 O3G 128.0 83.2 91.5 158.4 91.6 78.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 105 OD1 88.6 REMARK 620 3 ASP A 105 OD2 66.4 50.2 REMARK 620 4 GLU A 106 OE1 98.3 85.2 131.2 REMARK 620 5 DCP A 401 O2A 98.9 111.4 71.2 156.4 REMARK 620 6 DOC P 101 OP2 177.9 89.4 112.6 81.0 82.4 REMARK 620 7 HOH P 211 O 90.6 170.8 137.2 85.8 77.8 91.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 7 OD1 REMARK 620 2 ASP B 105 OD1 97.1 REMARK 620 3 ASP B 105 OD2 77.0 49.9 REMARK 620 4 GLU B 106 OE1 91.9 87.7 133.0 REMARK 620 5 DCP B 401 O2A 102.4 106.8 67.5 157.9 REMARK 620 6 DOC C 101 OP2 174.1 86.4 108.8 83.5 80.9 REMARK 620 7 HOH C 207 O 90.4 164.1 146.0 78.0 85.1 85.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 7 OD1 REMARK 620 2 ASP B 7 OD2 49.4 REMARK 620 3 PHE B 8 O 101.6 79.8 REMARK 620 4 ASP B 105 OD2 71.1 118.5 100.8 REMARK 620 5 DCP B 401 O2A 88.0 115.3 164.8 70.9 REMARK 620 6 DCP B 401 O2B 152.2 156.8 96.2 84.8 70.8 REMARK 620 7 DCP B 401 O3G 125.5 80.2 85.8 160.9 98.4 76.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DOC C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DOC P 101 and DT REMARK 800 P 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 2LF T 5 and DG T REMARK 800 6 DBREF 4TQS A 1 352 UNP Q97W02 DPO4_SULSO 1 352 DBREF 4TQS B 1 352 UNP Q97W02 DPO4_SULSO 1 352 DBREF 4TQS C 1 12 PDB 4TQS 4TQS 1 12 DBREF 4TQS D 1 18 PDB 4TQS 4TQS 1 18 DBREF 4TQS P 1 12 PDB 4TQS 4TQS 1 12 DBREF 4TQS T 1 18 PDB 4TQS 4TQS 1 18 SEQADV 4TQS HIS A -5 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS A -4 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS A -3 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS A -2 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS A -1 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS A 0 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS B -5 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS B -4 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS B -3 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS B -2 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS B -1 UNP Q97W02 EXPRESSION TAG SEQADV 4TQS HIS B 0 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 A 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 A 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 A 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 A 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 A 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 A 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 A 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 A 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 A 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 A 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 A 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 A 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 A 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 A 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 A 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 A 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 A 358 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 A 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 A 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 A 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 A 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 A 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 A 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 A 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 A 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 A 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 A 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 B 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 B 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 B 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 B 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 B 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 B 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 B 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 B 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 B 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 B 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 B 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 B 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 B 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 B 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 B 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 B 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 B 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 B 358 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 B 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 B 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 B 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 B 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 B 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 B 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 B 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 B 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 B 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 B 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 C 12 DG DG DG DG DG DA DA DG DG DA DT DT SEQRES 1 D 18 DT DC DA DC 2LF DG DA DA DT DC DC DT DT SEQRES 2 D 18 DC DC DC DC DC SEQRES 1 P 12 DG DG DG DG DG DA DA DG DG DA DT DT SEQRES 1 T 18 DT DC DA DC 2LF DG DA DA DT DC DC DT DT SEQRES 2 T 18 DC DC DC DC DC HET 2LF T 5 22 HET DCP A 401 28 HET MG A 402 1 HET MG A 403 1 HET DCP B 401 28 HET MG B 402 1 HET MG B 403 1 HET DOC C 101 18 HET DOC P 101 18 HETNAM 2LF (6S,7S,8S,10R)-2-AMINO-8-HYDROXY-4-OXO-3,6,7,8,9,10- HETNAM 2 2LF HEXAHYDRO-4H-7,10-EPOXYAZEPINO[1,2-E]PURIN-6-YL HETNAM 3 2LF DIHYDROGEN PHOSPHATE HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE FORMUL 6 2LF C10 H12 N5 O7 P FORMUL 7 DCP 2(C9 H16 N3 O13 P3) FORMUL 8 MG 4(MG 2+) FORMUL 13 DOC 2(C9 H14 N3 O6 P) FORMUL 15 HOH *488(H2 O) HELIX 1 AA1 TYR A 10 ASN A 20 1 11 HELIX 2 AA2 ASN A 47 LYS A 52 1 6 HELIX 3 AA3 PRO A 60 LEU A 68 1 9 HELIX 4 AA4 ARG A 77 GLU A 94 1 18 HELIX 5 AA5 ASP A 117 LYS A 137 1 21 HELIX 6 AA6 ASN A 147 ALA A 158 1 12 HELIX 7 AA7 ASP A 167 LEU A 178 1 12 HELIX 8 AA8 ASP A 179 VAL A 183 5 5 HELIX 9 AA9 GLY A 187 LEU A 197 1 11 HELIX 10 AB1 LYS A 201 SER A 207 5 7 HELIX 11 AB2 GLU A 209 GLY A 218 1 10 HELIX 12 AB3 GLY A 218 ARG A 230 1 13 HELIX 13 AB4 ASN A 257 ASP A 277 1 21 HELIX 14 AB5 SER A 307 GLU A 325 1 19 HELIX 15 AB6 TYR B 10 ASN B 20 1 11 HELIX 16 AB7 PRO B 21 LYS B 24 5 4 HELIX 17 AB8 ASN B 47 LYS B 52 1 6 HELIX 18 AB9 PRO B 60 LEU B 68 1 9 HELIX 19 AC1 ARG B 77 GLU B 94 1 18 HELIX 20 AC2 ASP B 117 LYS B 137 1 21 HELIX 21 AC3 ASN B 147 LYS B 159 1 13 HELIX 22 AC4 ASP B 167 LEU B 178 1 12 HELIX 23 AC5 ASP B 179 VAL B 183 5 5 HELIX 24 AC6 GLY B 187 LYS B 196 1 10 HELIX 25 AC7 LYS B 201 SER B 207 5 7 HELIX 26 AC8 GLU B 209 GLY B 218 1 10 HELIX 27 AC9 GLY B 218 ARG B 230 1 13 HELIX 28 AD1 ASN B 257 ASP B 277 1 21 HELIX 29 AD2 SER B 307 ASP B 326 1 20 SHEET 1 AA1 5 ILE A 99 SER A 103 0 SHEET 2 AA1 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 AA1 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 AA1 5 VAL A 140 SER A 145 -1 O SER A 145 N VAL A 3 SHEET 5 AA1 5 ILE A 163 VAL A 165 1 O LYS A 164 N VAL A 142 SHEET 1 AA2 3 GLY A 41 ALA A 46 0 SHEET 2 AA2 3 VAL A 28 PHE A 33 -1 N VAL A 30 O ALA A 44 SHEET 3 AA2 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 AA3 4 SER A 244 THR A 250 0 SHEET 2 AA3 4 ILE A 330 SER A 338 -1 O PHE A 337 N ILE A 245 SHEET 3 AA3 4 ALA A 283 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 AA3 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 AA4 5 ILE B 99 SER B 103 0 SHEET 2 AA4 5 GLU B 106 ASP B 110 -1 O TYR B 108 N GLU B 100 SHEET 3 AA4 5 VAL B 3 PHE B 8 -1 N LEU B 4 O LEU B 109 SHEET 4 AA4 5 VAL B 140 SER B 145 -1 O GLY B 143 N PHE B 5 SHEET 5 AA4 5 ILE B 163 VAL B 165 1 O LYS B 164 N ILE B 144 SHEET 1 AA5 3 GLY B 41 ALA B 46 0 SHEET 2 AA5 3 VAL B 28 PHE B 33 -1 N VAL B 30 O THR B 45 SHEET 3 AA5 3 VAL B 72 PRO B 75 1 O VAL B 72 N VAL B 29 SHEET 1 AA6 4 SER B 244 SER B 255 0 SHEET 2 AA6 4 ILE B 330 PHE B 340 -1 O PHE B 337 N ILE B 245 SHEET 3 AA6 4 PRO B 281 THR B 290 -1 N VAL B 289 O ARG B 331 SHEET 4 AA6 4 ILE B 295 THR B 301 -1 O VAL B 296 N ALA B 288 LINK O3' DT C 12 P DOC C 101 1555 1555 1.65 LINK O3' DT P 12 P DOC P 101 1555 1555 1.63 LINK O3' 2LF T 5 P DG T 6 1555 1555 1.62 LINK OD1 ASP A 7 MG MG A 402 1555 1555 2.68 LINK OD2 ASP A 7 MG MG A 402 1555 1555 2.48 LINK OD1 ASP A 7 MG MG A 403 1555 1555 2.37 LINK O PHE A 8 MG MG A 402 1555 1555 2.25 LINK OD2 ASP A 105 MG MG A 402 1555 1555 2.44 LINK OD1 ASP A 105 MG MG A 403 1555 1555 2.55 LINK OD2 ASP A 105 MG MG A 403 1555 1555 2.64 LINK OE1 GLU A 106 MG MG A 403 1555 1555 2.30 LINK O2A DCP A 401 MG MG A 402 1555 1555 2.95 LINK O2B DCP A 401 MG MG A 402 1555 1555 2.46 LINK O3G DCP A 401 MG MG A 402 1555 1555 2.15 LINK O2A DCP A 401 MG MG A 403 1555 1555 2.75 LINK MG MG A 403 OP2 DOC P 101 1555 1555 2.22 LINK MG MG A 403 O HOH P 211 1555 1555 2.37 LINK OD1 ASP B 7 MG MG B 402 1555 1555 2.21 LINK OD1 ASP B 7 MG MG B 403 1555 1555 2.81 LINK OD2 ASP B 7 MG MG B 403 1555 1555 2.38 LINK O PHE B 8 MG MG B 403 1555 1555 2.40 LINK OD1 ASP B 105 MG MG B 402 1555 1555 2.59 LINK OD2 ASP B 105 MG MG B 402 1555 1555 2.62 LINK OD2 ASP B 105 MG MG B 403 1555 1555 2.36 LINK OE1 GLU B 106 MG MG B 402 1555 1555 2.45 LINK O2A DCP B 401 MG MG B 402 1555 1555 2.68 LINK O2A DCP B 401 MG MG B 403 1555 1555 2.70 LINK O2B DCP B 401 MG MG B 403 1555 1555 2.16 LINK O3G DCP B 401 MG MG B 403 1555 1555 2.32 LINK MG MG B 402 OP2 DOC C 101 1555 1555 2.32 LINK MG MG B 402 O HOH C 207 1555 1555 2.28 CISPEP 1 LYS B 159 PRO B 160 0 -2.19 SITE 1 AC1 24 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC1 24 ALA A 44 THR A 45 TYR A 48 ARG A 51 SITE 3 AC1 24 GLY A 58 ASP A 105 MG A 402 MG A 403 SITE 4 AC1 24 HOH A 602 HOH A 605 HOH A 613 HOH A 617 SITE 5 AC1 24 HOH A 619 HOH A 624 HOH A 696 HOH A 722 SITE 6 AC1 24 DT P 12 DOC P 101 DG T 6 DA T 7 SITE 1 AC2 5 ASP A 7 PHE A 8 ASP A 105 DCP A 401 SITE 2 AC2 5 MG A 403 SITE 1 AC3 7 ASP A 7 ASP A 105 GLU A 106 DCP A 401 SITE 2 AC3 7 MG A 402 DOC P 101 HOH P 211 SITE 1 AC4 24 ASP B 7 PHE B 8 ASP B 9 TYR B 10 SITE 2 AC4 24 PHE B 11 TYR B 12 ALA B 44 THR B 45 SITE 3 AC4 24 TYR B 48 ARG B 51 ALA B 57 GLY B 58 SITE 4 AC4 24 ASP B 105 LYS B 159 MG B 402 MG B 403 SITE 5 AC4 24 HOH B 507 HOH B 514 HOH B 580 HOH B 621 SITE 6 AC4 24 DT C 12 DOC C 101 DG D 6 DA D 7 SITE 1 AC5 7 ASP B 7 ASP B 105 GLU B 106 DCP B 401 SITE 2 AC5 7 MG B 403 DOC C 101 HOH C 207 SITE 1 AC6 5 ASP B 7 PHE B 8 ASP B 105 DCP B 401 SITE 2 AC6 5 MG B 402 SITE 1 AC7 13 ALA B 102 ASP B 105 GLU B 106 LYS B 152 SITE 2 AC7 13 DCP B 401 MG B 402 HOH B 518 DT C 11 SITE 3 AC7 13 DT C 12 HOH C 203 HOH C 207 HOH C 210 SITE 4 AC7 13 DC D 11 SITE 1 AC8 19 ALA A 102 ASP A 105 GLU A 106 LYS A 152 SITE 2 AC8 19 GLY A 185 DCP A 401 MG A 403 DA P 10 SITE 3 AC8 19 DT P 11 HOH P 202 HOH P 205 HOH P 207 SITE 4 AC8 19 HOH P 210 HOH P 211 DA T 7 DA T 8 SITE 5 AC8 19 DT T 9 DC T 10 HOH T 112 SITE 1 AC9 11 SER A 34 GLY A 41 ALA A 42 GLY A 58 SITE 2 AC9 11 PRO A 60 DCP A 401 HOH A 646 HOH A 691 SITE 3 AC9 11 DA T 7 HOH T 104 HOH T 105 CRYST1 52.120 184.242 52.124 90.00 110.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019186 0.000000 0.007017 0.00000 SCALE2 0.000000 0.005428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020428 0.00000