PDB Short entry for 4TR8 HEADER DNA BINDING PROTEIN 15-JUN-14 4TR8 TITLE CRYSTAL STRUCTURE OF DNA POLYMERASE SLIDING CLAMP FROM PSEUDOMONAS TITLE 2 AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA HB15; SOURCE 3 ORGANISM_TAXID: 983919; SOURCE 4 GENE: PA15_0320650; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA POLYMERASE, SLIDING CLAMP, PROCESSIVITY, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.OLIERIC,D.BURNOUF,E.ENNIFAR,P.WOLFF REVDAT 3 24-DEC-14 4TR8 1 REMARK REVDAT 2 19-NOV-14 4TR8 1 JRNL REVDAT 1 10-SEP-14 4TR8 0 JRNL AUTH P.WOLFF,I.AMAL,V.OLIERIC,O.CHALOIN,G.GYGLI,E.ENNIFAR, JRNL AUTH 2 B.LORBER,G.GUICHARD,J.WAGNER,A.DEJAEGERE,D.Y.BURNOUF JRNL TITL DIFFERENTIAL MODES OF PEPTIDE BINDING ONTO REPLICATIVE JRNL TITL 2 SLIDING CLAMPS FROM VARIOUS BACTERIAL ORIGINS. JRNL REF J.MED.CHEM. V. 57 7565 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25170813 JRNL DOI 10.1021/JM500467A REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 88625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4437 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6482 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2914 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6167 REMARK 3 BIN R VALUE (WORKING SET) : 0.2904 REMARK 3 BIN FREE R VALUE : 0.3107 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.86 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 315 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.24540 REMARK 3 B22 (A**2) : 5.58990 REMARK 3 B33 (A**2) : -2.34440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.284 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.116 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.109 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.113 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.108 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5634 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7655 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1968 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 146 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 837 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5634 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 751 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6592 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.31 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.24 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -17.6373 7.7039 -30.6066 REMARK 3 T TENSOR REMARK 3 T11: -0.0538 T22: -0.0506 REMARK 3 T33: -0.0559 T12: -0.0033 REMARK 3 T13: 0.0191 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.4817 L22: 1.2249 REMARK 3 L33: 0.2782 L12: -0.2648 REMARK 3 L13: 0.2832 L23: -0.2459 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: 0.0328 S13: 0.0216 REMARK 3 S21: 0.0979 S22: -0.0069 S23: -0.1262 REMARK 3 S31: -0.0909 S32: 0.0130 S33: 0.0637 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -39.3429 -14.9245 -54.4290 REMARK 3 T TENSOR REMARK 3 T11: 0.0492 T22: -0.1082 REMARK 3 T33: -0.1209 T12: -0.0287 REMARK 3 T13: 0.0060 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.0748 L22: 2.3528 REMARK 3 L33: 0.2513 L12: -0.0724 REMARK 3 L13: 0.2736 L23: 0.1694 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.0019 S13: -0.0648 REMARK 3 S21: -0.6519 S22: 0.0271 S23: 0.1976 REMARK 3 S31: -0.0148 S32: 0.0118 S33: -0.0500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.5 AND PEG REMARK 280 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.26500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.26500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 23 REMARK 465 ARG A 24 REMARK 465 GLN A 25 REMARK 465 LEU A 367 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 ARG B 23 REMARK 465 ARG B 24 REMARK 465 GLN B 25 REMARK 465 THR B 118 REMARK 465 VAL B 119 REMARK 465 GLU B 120 REMARK 465 GLU B 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A9985 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A9987 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A9989 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A9990 CG ND1 CD2 CE1 NE2 REMARK 470 SER A9991 OG REMARK 470 ARG A9997 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 MET A 76 CE REMARK 470 GLU A 94 CB CG CD OE1 OE2 REMARK 470 ARG A 103 CD NE CZ NH1 NH2 REMARK 470 ARG A 105 CD NE CZ NH1 NH2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 134 CD CE NZ REMARK 470 GLN A 185 CG CD OE1 NE2 REMARK 470 GLN A 211 CG CD OE1 NE2 REMARK 470 ASP A 212 CG OD1 OD2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ARG A 251 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 TYR A 279 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 300 CG CD OE1 NE2 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 THR B 26 OG1 CG2 REMARK 470 LEU B 30 CG CD1 CD2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 ASP B 61 CG OD1 OD2 REMARK 470 ILE B 68 CD1 REMARK 470 MET B 76 CE REMARK 470 GLU B 94 CB CG CD OE1 OE2 REMARK 470 GLN B 95 CG CD OE1 NE2 REMARK 470 LYS B 100 CE NZ REMARK 470 GLN B 185 CG CD OE1 NE2 REMARK 470 GLN B 189 CG CD OE1 NE2 REMARK 470 ASP B 190 CG OD1 OD2 REMARK 470 GLU B 210 CB CG CD OE1 OE2 REMARK 470 GLN B 211 CB CG CD OE1 NE2 REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 470 GLN B 221 CG CD OE1 NE2 REMARK 470 HIS B 222 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 231 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 LYS B 241 CG CD CE NZ REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 251 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 277 CG CD OE1 OE2 REMARK 470 LYS B 278 CG CD CE NZ REMARK 470 ASN B 312 CG OD1 ND2 REMARK 470 ARG B 366 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 367 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A9989 150.71 88.37 REMARK 500 HIS A9990 22.09 -158.85 REMARK 500 SER A9991 30.85 150.79 REMARK 500 SER A9992 -52.10 69.83 REMARK 500 LEU A 49 -17.35 80.56 REMARK 500 GLU A 94 -115.34 68.79 REMARK 500 GLU A 120 71.04 -106.04 REMARK 500 GLU A 210 95.97 -65.16 REMARK 500 SER A 342 -78.93 -127.74 REMARK 500 LEU B 49 -24.84 83.08 REMARK 500 ASP B 85 18.27 58.62 REMARK 500 GLN B 95 19.00 57.46 REMARK 500 ASN B 156 48.96 -83.08 REMARK 500 GLN B 189 -46.28 68.03 REMARK 500 SER B 342 -88.44 -134.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 260 OD1 REMARK 620 2 ASP A 260 OD2 51.0 REMARK 620 3 HOH A1144 O 122.5 76.1 REMARK 620 4 HOH A1109 O 143.8 122.5 80.2 REMARK 620 5 HOH B 421 O 71.9 81.0 80.1 144.0 REMARK 620 6 HOH B 401 O 82.6 132.8 149.2 88.6 93.3 REMARK 620 7 HOH B 412 O 131.3 138.5 73.7 79.3 66.3 76.1 REMARK 620 8 HOH B 404 O 75.7 73.1 112.5 69.2 146.8 89.5 145.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1001 DBREF 4TR8 A 1 367 UNP V4MZL6 V4MZL6_PSEAI 1 367 DBREF 4TR8 B 1 367 UNP V4MZL6 V4MZL6_PSEAI 1 367 SEQADV 4TR8 HIS A 9985 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS A 9986 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS A 9987 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS A 9988 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS A 9989 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS A 9990 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 SER A 9991 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 SER A 9992 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 GLY A 9993 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 LEU A 9994 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 VAL A 9995 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 PRO A 9996 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 ARG A 9997 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 GLY A 9998 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 SER A 9999 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS A 0 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS B -15 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS B -14 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS B -13 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS B -12 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS B -11 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS B -10 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 SER B -9 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 SER B -8 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 GLY B -7 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 LEU B -6 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 VAL B -5 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 PRO B -4 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 ARG B -3 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 GLY B -2 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 SER B -1 UNP V4MZL6 EXPRESSION TAG SEQADV 4TR8 HIS B 0 UNP V4MZL6 EXPRESSION TAG SEQRES 1 A 383 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 383 GLY SER HIS MET HIS PHE THR ILE GLN ARG GLU ALA LEU SEQRES 3 A 383 LEU LYS PRO LEU GLN LEU VAL ALA GLY VAL VAL GLU ARG SEQRES 4 A 383 ARG GLN THR LEU PRO VAL LEU SER ASN VAL LEU LEU VAL SEQRES 5 A 383 VAL GLU GLY GLN GLN LEU SER LEU THR GLY THR ASP LEU SEQRES 6 A 383 GLU VAL GLU LEU VAL GLY ARG VAL VAL LEU GLU ASP ALA SEQRES 7 A 383 ALA GLU PRO GLY GLU ILE THR VAL PRO ALA ARG LYS LEU SEQRES 8 A 383 MET ASP ILE CYS LYS SER LEU PRO ASN ASP VAL LEU ILE SEQRES 9 A 383 ASP ILE ARG VAL GLU GLU GLN LYS LEU LEU VAL LYS ALA SEQRES 10 A 383 GLY ARG SER ARG PHE THR LEU SER THR LEU PRO ALA ASN SEQRES 11 A 383 ASP PHE PRO THR VAL GLU GLU GLY PRO GLY SER LEU ASN SEQRES 12 A 383 PHE SER ILE ALA GLN SER LYS LEU ARG ARG LEU ILE ASP SEQRES 13 A 383 ARG THR SER PHE ALA MET ALA GLN GLN ASP VAL ARG TYR SEQRES 14 A 383 TYR LEU ASN GLY MET LEU LEU GLU VAL ASN GLY GLY THR SEQRES 15 A 383 LEU ARG SER VAL ALA THR ASP GLY HIS ARG LEU ALA MET SEQRES 16 A 383 CYS SER LEU ASP ALA GLN ILE PRO SER GLN ASP ARG HIS SEQRES 17 A 383 GLN VAL ILE VAL PRO ARG LYS GLY ILE LEU GLU LEU ALA SEQRES 18 A 383 ARG LEU LEU THR GLU GLN ASP GLY GLU VAL GLY ILE VAL SEQRES 19 A 383 LEU GLY GLN HIS HIS ILE ARG ALA THR THR GLY GLU PHE SEQRES 20 A 383 THR PHE THR SER LYS LEU VAL ASP GLY LYS PHE PRO ASP SEQRES 21 A 383 TYR GLU ARG VAL LEU PRO ARG GLY GLY ASP LYS LEU VAL SEQRES 22 A 383 VAL GLY ASP ARG GLN GLN LEU ARG GLU ALA PHE SER ARG SEQRES 23 A 383 THR ALA ILE LEU SER ASN GLU LYS TYR ARG GLY ILE ARG SEQRES 24 A 383 LEU GLN LEU SER ASN GLY LEU LEU LYS ILE GLN ALA ASN SEQRES 25 A 383 ASN PRO GLU GLN GLU GLU ALA GLU GLU GLU VAL GLN VAL SEQRES 26 A 383 GLU TYR ASN GLY GLY ASN LEU GLU ILE GLY PHE ASN VAL SEQRES 27 A 383 SER TYR LEU LEU ASP VAL LEU GLY VAL ILE GLY THR GLU SEQRES 28 A 383 GLN VAL ARG PHE ILE LEU SER ASP SER ASN SER SER ALA SEQRES 29 A 383 LEU VAL HIS GLU ALA ASP ASN ASP ASP SER ALA TYR VAL SEQRES 30 A 383 VAL MET PRO MET ARG LEU SEQRES 1 B 383 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 B 383 GLY SER HIS MET HIS PHE THR ILE GLN ARG GLU ALA LEU SEQRES 3 B 383 LEU LYS PRO LEU GLN LEU VAL ALA GLY VAL VAL GLU ARG SEQRES 4 B 383 ARG GLN THR LEU PRO VAL LEU SER ASN VAL LEU LEU VAL SEQRES 5 B 383 VAL GLU GLY GLN GLN LEU SER LEU THR GLY THR ASP LEU SEQRES 6 B 383 GLU VAL GLU LEU VAL GLY ARG VAL VAL LEU GLU ASP ALA SEQRES 7 B 383 ALA GLU PRO GLY GLU ILE THR VAL PRO ALA ARG LYS LEU SEQRES 8 B 383 MET ASP ILE CYS LYS SER LEU PRO ASN ASP VAL LEU ILE SEQRES 9 B 383 ASP ILE ARG VAL GLU GLU GLN LYS LEU LEU VAL LYS ALA SEQRES 10 B 383 GLY ARG SER ARG PHE THR LEU SER THR LEU PRO ALA ASN SEQRES 11 B 383 ASP PHE PRO THR VAL GLU GLU GLY PRO GLY SER LEU ASN SEQRES 12 B 383 PHE SER ILE ALA GLN SER LYS LEU ARG ARG LEU ILE ASP SEQRES 13 B 383 ARG THR SER PHE ALA MET ALA GLN GLN ASP VAL ARG TYR SEQRES 14 B 383 TYR LEU ASN GLY MET LEU LEU GLU VAL ASN GLY GLY THR SEQRES 15 B 383 LEU ARG SER VAL ALA THR ASP GLY HIS ARG LEU ALA MET SEQRES 16 B 383 CYS SER LEU ASP ALA GLN ILE PRO SER GLN ASP ARG HIS SEQRES 17 B 383 GLN VAL ILE VAL PRO ARG LYS GLY ILE LEU GLU LEU ALA SEQRES 18 B 383 ARG LEU LEU THR GLU GLN ASP GLY GLU VAL GLY ILE VAL SEQRES 19 B 383 LEU GLY GLN HIS HIS ILE ARG ALA THR THR GLY GLU PHE SEQRES 20 B 383 THR PHE THR SER LYS LEU VAL ASP GLY LYS PHE PRO ASP SEQRES 21 B 383 TYR GLU ARG VAL LEU PRO ARG GLY GLY ASP LYS LEU VAL SEQRES 22 B 383 VAL GLY ASP ARG GLN GLN LEU ARG GLU ALA PHE SER ARG SEQRES 23 B 383 THR ALA ILE LEU SER ASN GLU LYS TYR ARG GLY ILE ARG SEQRES 24 B 383 LEU GLN LEU SER ASN GLY LEU LEU LYS ILE GLN ALA ASN SEQRES 25 B 383 ASN PRO GLU GLN GLU GLU ALA GLU GLU GLU VAL GLN VAL SEQRES 26 B 383 GLU TYR ASN GLY GLY ASN LEU GLU ILE GLY PHE ASN VAL SEQRES 27 B 383 SER TYR LEU LEU ASP VAL LEU GLY VAL ILE GLY THR GLU SEQRES 28 B 383 GLN VAL ARG PHE ILE LEU SER ASP SER ASN SER SER ALA SEQRES 29 B 383 LEU VAL HIS GLU ALA ASP ASN ASP ASP SER ALA TYR VAL SEQRES 30 B 383 VAL MET PRO MET ARG LEU HET NA A1001 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *432(H2 O) HELIX 1 AA1 ARG A 7 VAL A 20 1 14 HELIX 2 AA2 LEU A 27 LEU A 30 5 4 HELIX 3 AA3 ALA A 72 LEU A 82 1 11 HELIX 4 AA4 PRO A 112 PHE A 116 5 5 HELIX 5 AA5 GLN A 132 ARG A 141 1 10 HELIX 6 AA6 THR A 142 MET A 146 5 5 HELIX 7 AA7 ARG A 152 LEU A 155 5 4 HELIX 8 AA8 ARG A 198 LEU A 208 1 11 HELIX 9 AA9 ASP A 244 LEU A 249 5 6 HELIX 10 AB1 ARG A 261 ILE A 273 1 13 HELIX 11 AB2 VAL A 322 ILE A 332 1 11 HELIX 12 AB3 ARG B 7 GLY B 19 1 13 HELIX 13 AB4 LEU B 27 LEU B 30 5 4 HELIX 14 AB5 ALA B 72 LEU B 82 1 11 HELIX 15 AB6 PRO B 112 PHE B 116 5 5 HELIX 16 AB7 GLN B 132 ARG B 141 1 10 HELIX 17 AB8 THR B 142 MET B 146 5 5 HELIX 18 AB9 ARG B 152 LEU B 155 5 4 HELIX 19 AC1 ARG B 198 LEU B 208 1 11 HELIX 20 AC2 ASP B 244 VAL B 248 5 5 HELIX 21 AC3 ARG B 261 ILE B 273 1 13 HELIX 22 AC4 VAL B 322 ILE B 332 1 11 SHEET 1 AA1 8 HIS A 2 GLN A 6 0 SHEET 2 AA1 8 LEU A 87 GLU A 93 -1 O ILE A 88 N ILE A 5 SHEET 3 AA1 8 LYS A 96 ALA A 101 -1 O LYS A 100 N ASP A 89 SHEET 4 AA1 8 SER A 104 SER A 109 -1 O LEU A 108 N LEU A 97 SHEET 5 AA1 8 GLU B 302 GLN B 308 -1 O GLU B 302 N THR A 107 SHEET 6 AA1 8 LEU B 290 ASN B 296 -1 N ILE B 293 O GLU B 305 SHEET 7 AA1 8 GLY B 281 SER B 287 -1 N ARG B 283 O GLN B 294 SHEET 8 AA1 8 LEU B 316 ASN B 321 -1 O LEU B 316 N LEU B 286 SHEET 1 AA2 8 GLY A 66 PRO A 71 0 SHEET 2 AA2 8 ASN A 32 GLU A 38 -1 N LEU A 35 O ILE A 68 SHEET 3 AA2 8 GLN A 41 THR A 47 -1 O THR A 45 N LEU A 34 SHEET 4 AA2 8 VAL A 51 VAL A 58 -1 O GLY A 55 N LEU A 44 SHEET 5 AA2 8 PHE A 231 LYS A 236 -1 O THR A 234 N GLU A 52 SHEET 6 AA2 8 HIS A 223 THR A 227 -1 N ALA A 226 O PHE A 233 SHEET 7 AA2 8 GLU A 214 GLY A 220 -1 N GLY A 220 O HIS A 223 SHEET 8 AA2 8 GLY A 124 ALA A 131 -1 N PHE A 128 O ILE A 217 SHEET 1 AA3 8 HIS A 192 PRO A 197 0 SHEET 2 AA3 8 GLY A 157 ASN A 163 -1 N VAL A 162 O HIS A 192 SHEET 3 AA3 8 THR A 166 THR A 172 -1 O ARG A 168 N GLU A 161 SHEET 4 AA3 8 ARG A 176 ASP A 183 -1 O CYS A 180 N SER A 169 SHEET 5 AA3 8 SER A 358 VAL A 362 -1 O VAL A 361 N LEU A 177 SHEET 6 AA3 8 ALA A 348 GLU A 352 -1 N ALA A 348 O VAL A 362 SHEET 7 AA3 8 GLN A 336 LEU A 341 -1 N ILE A 340 O LEU A 349 SHEET 8 AA3 8 LYS A 255 ASP A 260 -1 N VAL A 257 O PHE A 339 SHEET 1 AA4 8 LEU A 316 ASN A 321 0 SHEET 2 AA4 8 GLY A 281 SER A 287 -1 N LEU A 286 O LEU A 316 SHEET 3 AA4 8 LEU A 290 ASN A 296 -1 O GLN A 294 N ARG A 283 SHEET 4 AA4 8 GLU A 302 GLN A 308 -1 O GLU A 305 N ILE A 293 SHEET 5 AA4 8 SER B 104 SER B 109 -1 O ARG B 105 N GLU A 304 SHEET 6 AA4 8 LYS B 96 ALA B 101 -1 N LEU B 97 O LEU B 108 SHEET 7 AA4 8 LEU B 87 GLU B 93 -1 N ASP B 89 O LYS B 100 SHEET 8 AA4 8 HIS B 2 GLN B 6 -1 N PHE B 3 O ILE B 90 SHEET 1 AA5 8 GLY B 66 PRO B 71 0 SHEET 2 AA5 8 ASN B 32 GLU B 38 -1 N LEU B 35 O ILE B 68 SHEET 3 AA5 8 GLN B 41 THR B 47 -1 O SER B 43 N VAL B 36 SHEET 4 AA5 8 VAL B 51 VAL B 58 -1 O VAL B 57 N LEU B 42 SHEET 5 AA5 8 PHE B 231 LYS B 236 -1 O THR B 234 N GLU B 52 SHEET 6 AA5 8 HIS B 223 THR B 227 -1 N ALA B 226 O PHE B 233 SHEET 7 AA5 8 GLU B 214 LEU B 219 -1 N GLY B 216 O THR B 227 SHEET 8 AA5 8 LEU B 126 ALA B 131 -1 N PHE B 128 O ILE B 217 SHEET 1 AA6 8 HIS B 192 PRO B 197 0 SHEET 2 AA6 8 GLY B 157 ASN B 163 -1 N MET B 158 O VAL B 196 SHEET 3 AA6 8 THR B 166 THR B 172 -1 O ARG B 168 N GLU B 161 SHEET 4 AA6 8 ARG B 176 ASP B 183 -1 O LEU B 182 N LEU B 167 SHEET 5 AA6 8 SER B 358 VAL B 362 -1 O ALA B 359 N MET B 179 SHEET 6 AA6 8 ALA B 348 GLU B 352 -1 N VAL B 350 O TYR B 360 SHEET 7 AA6 8 GLN B 336 LEU B 341 -1 N ILE B 340 O LEU B 349 SHEET 8 AA6 8 LYS B 255 ASP B 260 -1 N VAL B 257 O PHE B 339 LINK OD1 ASP A 260 NA NA A1001 1555 1555 2.49 LINK OD2 ASP A 260 NA NA A1001 1555 1555 2.67 LINK NA NA A1001 O HOH A1144 1555 1555 2.53 LINK NA NA A1001 O HOH A1109 1555 1555 2.47 LINK NA NA A1001 O HOH B 421 1555 3454 2.56 LINK NA NA A1001 O HOH B 401 1555 3454 2.29 LINK NA NA A1001 O HOH B 412 1555 3454 2.72 LINK NA NA A1001 O HOH B 404 1555 3454 2.57 SITE 1 AC1 7 ASP A 260 HOH A1109 HOH A1144 HOH B 401 SITE 2 AC1 7 HOH B 404 HOH B 412 HOH B 421 CRYST1 80.530 92.410 127.400 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012418 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007849 0.00000