PDB Short entry for 4TTB HEADER OXIDOREDUCTASE 20-JUN-14 4TTB TITLE CRYSTAL STRUCTURE OF HOMO SAPIENS IODOTYROSINE DEIODINASE (IYD) BOUND TITLE 2 TO FMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IODOTYROSINE DEHALOGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 32-289; COMPND 5 SYNONYM: IYD-1; COMPND 6 EC: 1.22.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IYD, C6ORF71, DEHAL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-SUMO KEYWDS OXIDOREDUCTASE, FLAVOPROTEIN, MEMBRANE, TRANSMEMBRANE, DEHALOGENASE, KEYWDS 2 IODIDE SALVAGE, FMN, MONO-IODOTYROSINE, NADP EXPDTA X-RAY DIFFRACTION AUTHOR W.CHUENCHOR,J.HU,S.ROKITA REVDAT 5 27-SEP-23 4TTB 1 REMARK REVDAT 4 25-DEC-19 4TTB 1 REMARK REVDAT 3 20-SEP-17 4TTB 1 SOURCE JRNL REMARK REVDAT 2 14-JAN-15 4TTB 1 JRNL REVDAT 1 26-NOV-14 4TTB 0 JRNL AUTH J.HU,W.CHUENCHOR,S.E.ROKITA JRNL TITL A SWITCH BETWEEN ONE- AND TWO-ELECTRON CHEMISTRY OF THE JRNL TITL 2 HUMAN FLAVOPROTEIN IODOTYROSINE DEIODINASE IS CONTROLLED BY JRNL TITL 3 SUBSTRATE. JRNL REF J.BIOL.CHEM. V. 290 590 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25395621 JRNL DOI 10.1074/JBC.M114.605964 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0907 - 4.8903 0.99 2467 132 0.1696 0.1871 REMARK 3 2 4.8903 - 3.8828 1.00 2484 138 0.1562 0.1532 REMARK 3 3 3.8828 - 3.3924 1.00 2501 130 0.1909 0.2259 REMARK 3 4 3.3924 - 3.0823 0.99 2451 136 0.2126 0.2118 REMARK 3 5 3.0823 - 2.8615 1.00 2469 138 0.2445 0.2216 REMARK 3 6 2.8615 - 2.6928 0.99 2447 129 0.2387 0.2546 REMARK 3 7 2.6928 - 2.5580 0.99 2463 133 0.2690 0.2642 REMARK 3 8 2.5580 - 2.4470 0.98 2452 130 0.2966 0.3051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3175 REMARK 3 ANGLE : 1.142 4325 REMARK 3 CHIRALITY : 0.075 502 REMARK 3 PLANARITY : 0.006 537 REMARK 3 DIHEDRAL : 12.778 1193 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 71:82) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8304 17.5990 18.2265 REMARK 3 T TENSOR REMARK 3 T11: 1.3994 T22: 1.0375 REMARK 3 T33: 0.6280 T12: -0.0250 REMARK 3 T13: -0.0205 T23: -0.2464 REMARK 3 L TENSOR REMARK 3 L11: 4.2232 L22: 7.4268 REMARK 3 L33: 3.4895 L12: -2.5986 REMARK 3 L13: 1.2268 L23: -4.9324 REMARK 3 S TENSOR REMARK 3 S11: 0.3348 S12: 0.3682 S13: 0.1838 REMARK 3 S21: 0.3691 S22: 0.3764 S23: -0.2703 REMARK 3 S31: -0.8612 S32: -0.3451 S33: 0.1443 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 83:98) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8158 22.8573 -2.6046 REMARK 3 T TENSOR REMARK 3 T11: 0.6936 T22: 0.4090 REMARK 3 T33: 0.6269 T12: -0.0640 REMARK 3 T13: -0.0520 T23: 0.0955 REMARK 3 L TENSOR REMARK 3 L11: 4.7669 L22: 5.6015 REMARK 3 L33: 8.6352 L12: -2.0678 REMARK 3 L13: -1.5467 L23: 2.9990 REMARK 3 S TENSOR REMARK 3 S11: 0.3694 S12: 0.2813 S13: 1.0509 REMARK 3 S21: -0.2743 S22: -0.0196 S23: -1.5489 REMARK 3 S31: -1.7779 S32: -0.5857 S33: -0.1044 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 99:125) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5935 5.5431 -6.5271 REMARK 3 T TENSOR REMARK 3 T11: 0.3695 T22: 0.5515 REMARK 3 T33: 0.4958 T12: -0.0682 REMARK 3 T13: -0.0124 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 4.3505 L22: 2.9872 REMARK 3 L33: 3.4752 L12: -1.6408 REMARK 3 L13: -0.2843 L23: 0.3946 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.7336 S13: -0.1109 REMARK 3 S21: 0.1533 S22: -0.0201 S23: -0.3429 REMARK 3 S31: 0.5434 S32: 1.4067 S33: 0.1640 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 126:142) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0818 -2.9418 5.2438 REMARK 3 T TENSOR REMARK 3 T11: 1.0925 T22: 0.3064 REMARK 3 T33: 0.5305 T12: 0.0585 REMARK 3 T13: 0.0243 T23: 0.0703 REMARK 3 L TENSOR REMARK 3 L11: 3.1628 L22: 3.7423 REMARK 3 L33: 4.2855 L12: -0.8069 REMARK 3 L13: 1.3053 L23: -0.2105 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: -0.6018 S13: -0.4145 REMARK 3 S21: 0.3326 S22: 0.0174 S23: 0.2248 REMARK 3 S31: 2.0701 S32: 0.6281 S33: 0.1541 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 143:157) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7749 -13.0388 -14.2165 REMARK 3 T TENSOR REMARK 3 T11: 2.1115 T22: 0.8051 REMARK 3 T33: 0.6015 T12: 0.6265 REMARK 3 T13: 0.1476 T23: -0.1849 REMARK 3 L TENSOR REMARK 3 L11: 4.0430 L22: 8.3571 REMARK 3 L33: 3.5500 L12: -5.0704 REMARK 3 L13: 1.0964 L23: 1.0168 REMARK 3 S TENSOR REMARK 3 S11: 0.3322 S12: 0.4295 S13: -1.5659 REMARK 3 S21: -0.2153 S22: 0.2800 S23: 1.1119 REMARK 3 S31: 1.2416 S32: 0.8396 S33: 1.9197 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 158:189) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4648 -8.1564 -19.5014 REMARK 3 T TENSOR REMARK 3 T11: 1.2324 T22: 0.8616 REMARK 3 T33: 0.6377 T12: 0.1323 REMARK 3 T13: 0.0329 T23: -0.2071 REMARK 3 L TENSOR REMARK 3 L11: 2.3468 L22: 3.2410 REMARK 3 L33: 3.3379 L12: 0.4205 REMARK 3 L13: -0.6275 L23: -0.1595 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: 1.3355 S13: -1.2109 REMARK 3 S21: -0.4967 S22: 0.5764 S23: 0.3384 REMARK 3 S31: 1.6752 S32: 0.0953 S33: 0.1496 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 190:250) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5915 -3.6635 -3.0129 REMARK 3 T TENSOR REMARK 3 T11: 1.0521 T22: 0.3133 REMARK 3 T33: 0.5195 T12: -0.0930 REMARK 3 T13: 0.0634 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 4.1674 L22: 2.5272 REMARK 3 L33: 3.6055 L12: -1.6692 REMARK 3 L13: -0.5086 L23: 0.2272 REMARK 3 S TENSOR REMARK 3 S11: -0.3949 S12: 0.3206 S13: -0.6681 REMARK 3 S21: 0.2465 S22: 0.1445 S23: 0.4437 REMARK 3 S31: 2.2313 S32: -0.0979 S33: 0.1556 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 251:266) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9193 -8.9594 -1.5565 REMARK 3 T TENSOR REMARK 3 T11: 1.6681 T22: 0.3024 REMARK 3 T33: 0.3363 T12: 0.1302 REMARK 3 T13: -0.0249 T23: -0.1643 REMARK 3 L TENSOR REMARK 3 L11: 3.8570 L22: 2.7717 REMARK 3 L33: 5.7737 L12: 0.4547 REMARK 3 L13: -1.7206 L23: -2.1412 REMARK 3 S TENSOR REMARK 3 S11: -0.3136 S12: -0.6161 S13: -1.8701 REMARK 3 S21: 0.9232 S22: 0.0240 S23: 0.1952 REMARK 3 S31: 2.1735 S32: 0.3300 S33: 0.0196 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 267:290) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6764 11.7959 -13.8570 REMARK 3 T TENSOR REMARK 3 T11: 0.4629 T22: 0.7554 REMARK 3 T33: 0.4341 T12: -0.0669 REMARK 3 T13: -0.0709 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 7.7787 L22: 1.7105 REMARK 3 L33: 6.9597 L12: -2.1340 REMARK 3 L13: -1.4127 L23: 0.8025 REMARK 3 S TENSOR REMARK 3 S11: 0.1673 S12: 1.7606 S13: 0.3447 REMARK 3 S21: -0.0502 S22: -0.3150 S23: 0.0335 REMARK 3 S31: -0.1621 S32: -1.2422 S33: 0.1309 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 71:82) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3590 12.7571 -18.8349 REMARK 3 T TENSOR REMARK 3 T11: 1.0889 T22: 1.2220 REMARK 3 T33: 0.8374 T12: -0.2294 REMARK 3 T13: 0.1350 T23: 0.1194 REMARK 3 L TENSOR REMARK 3 L11: 3.5679 L22: 1.0289 REMARK 3 L33: 2.2083 L12: 0.1590 REMARK 3 L13: -2.1073 L23: -0.3178 REMARK 3 S TENSOR REMARK 3 S11: 0.8036 S12: -0.2885 S13: -0.3155 REMARK 3 S21: 0.9457 S22: 0.1422 S23: 0.3093 REMARK 3 S31: -0.1585 S32: 0.5620 S33: -0.3361 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 83:98) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3554 14.4541 1.9958 REMARK 3 T TENSOR REMARK 3 T11: 0.5369 T22: 0.6729 REMARK 3 T33: 0.6014 T12: -0.2217 REMARK 3 T13: -0.1141 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 6.5971 L22: 3.7822 REMARK 3 L33: 2.4493 L12: -0.9496 REMARK 3 L13: -3.8629 L23: 0.7070 REMARK 3 S TENSOR REMARK 3 S11: -0.1554 S12: -0.2750 S13: 1.5749 REMARK 3 S21: 0.3234 S22: 0.5189 S23: -0.5637 REMARK 3 S31: -0.2892 S32: 1.6711 S33: -0.1310 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 99:142) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5306 13.7081 1.1512 REMARK 3 T TENSOR REMARK 3 T11: 0.3531 T22: 0.5303 REMARK 3 T33: 0.4028 T12: -0.1547 REMARK 3 T13: 0.0246 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.9017 L22: 2.6733 REMARK 3 L33: 8.1733 L12: -0.6550 REMARK 3 L13: 0.4649 L23: 0.0690 REMARK 3 S TENSOR REMARK 3 S11: -0.3145 S12: 0.4586 S13: -0.1246 REMARK 3 S21: 0.2681 S22: 0.2017 S23: 0.3737 REMARK 3 S31: -0.1798 S32: -2.1358 S33: 0.2215 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 143:157) REMARK 3 ORIGIN FOR THE GROUP (A): -43.7787 7.7520 13.6180 REMARK 3 T TENSOR REMARK 3 T11: 0.7326 T22: 2.3248 REMARK 3 T33: 0.5881 T12: -0.3936 REMARK 3 T13: 0.3888 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 5.6795 L22: 1.8756 REMARK 3 L33: 2.5975 L12: -0.3417 REMARK 3 L13: -1.8472 L23: -0.8207 REMARK 3 S TENSOR REMARK 3 S11: -0.3875 S12: -0.0801 S13: -1.3668 REMARK 3 S21: 0.5108 S22: 0.0333 S23: 0.6394 REMARK 3 S31: 0.3902 S32: -1.6844 S33: 0.4750 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 158:189) REMARK 3 ORIGIN FOR THE GROUP (A): -37.6820 7.1231 18.9966 REMARK 3 T TENSOR REMARK 3 T11: 0.9287 T22: 1.2021 REMARK 3 T33: 0.6360 T12: -0.2599 REMARK 3 T13: 0.1418 T23: 0.0964 REMARK 3 L TENSOR REMARK 3 L11: 2.6218 L22: 4.6022 REMARK 3 L33: 3.5048 L12: 0.8170 REMARK 3 L13: -0.3900 L23: -0.0811 REMARK 3 S TENSOR REMARK 3 S11: 0.5905 S12: -0.7927 S13: -0.4876 REMARK 3 S21: 0.8997 S22: 0.0252 S23: 0.5341 REMARK 3 S31: 0.6186 S32: -1.8148 S33: 0.1422 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 190:250) REMARK 3 ORIGIN FOR THE GROUP (A): -31.8164 5.7143 2.4244 REMARK 3 T TENSOR REMARK 3 T11: 0.5821 T22: 0.8329 REMARK 3 T33: 0.5174 T12: -0.3742 REMARK 3 T13: 0.0756 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 3.9770 L22: 2.4337 REMARK 3 L33: 3.9923 L12: -2.0940 REMARK 3 L13: -0.2945 L23: 0.2674 REMARK 3 S TENSOR REMARK 3 S11: -0.2623 S12: 0.2726 S13: -0.8874 REMARK 3 S21: 0.2032 S22: 0.0694 S23: 0.3928 REMARK 3 S31: 0.9690 S32: -2.0383 S33: 0.1862 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 251:266) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7807 5.3098 0.9780 REMARK 3 T TENSOR REMARK 3 T11: 0.5737 T22: 1.3922 REMARK 3 T33: 0.7109 T12: -0.4611 REMARK 3 T13: 0.1218 T23: -0.0656 REMARK 3 L TENSOR REMARK 3 L11: 3.3861 L22: 2.7253 REMARK 3 L33: 4.5064 L12: 0.8509 REMARK 3 L13: 1.8765 L23: 1.3096 REMARK 3 S TENSOR REMARK 3 S11: -0.2712 S12: 0.6248 S13: -0.8531 REMARK 3 S21: -0.4007 S22: -0.0996 S23: 1.0661 REMARK 3 S31: 0.8780 S32: -2.2076 S33: 0.1249 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 267:290) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9153 5.5113 13.2156 REMARK 3 T TENSOR REMARK 3 T11: 0.7086 T22: 0.3858 REMARK 3 T33: 0.3921 T12: 0.0914 REMARK 3 T13: -0.1050 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 4.6203 L22: 5.1751 REMARK 3 L33: 6.4689 L12: -3.9895 REMARK 3 L13: -1.0042 L23: 0.9112 REMARK 3 S TENSOR REMARK 3 S11: -0.6658 S12: -0.6661 S13: 0.1842 REMARK 3 S21: 1.0397 S22: 0.5751 S23: -0.4806 REMARK 3 S31: 1.0084 S32: 0.6104 S33: 0.0863 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20957 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.447 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3TO0 REMARK 200 REMARK 200 REMARK: CUBIC CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M AMMONIUM SULFATE, 25% REMARK 280 PENTAERYTHRITOL ETHOXYLATE, 50 MM BISTRIS, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.83833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.67667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 GLU A 33 REMARK 465 PRO A 34 REMARK 465 ARG A 35 REMARK 465 THR A 36 REMARK 465 ARG A 37 REMARK 465 ALA A 38 REMARK 465 GLU A 39 REMARK 465 ALA A 40 REMARK 465 ARG A 41 REMARK 465 PRO A 42 REMARK 465 TRP A 43 REMARK 465 VAL A 44 REMARK 465 ASP A 45 REMARK 465 GLU A 46 REMARK 465 ASP A 47 REMARK 465 LEU A 48 REMARK 465 LYS A 49 REMARK 465 ASP A 50 REMARK 465 SER A 51 REMARK 465 SER A 52 REMARK 465 ASP A 53 REMARK 465 LEU A 54 REMARK 465 HIS A 55 REMARK 465 GLN A 56 REMARK 465 ALA A 57 REMARK 465 GLU A 58 REMARK 465 GLU A 59 REMARK 465 ASP A 60 REMARK 465 ALA A 61 REMARK 465 ASP A 62 REMARK 465 GLU A 63 REMARK 465 TRP A 64 REMARK 465 GLN A 65 REMARK 465 GLU A 66 REMARK 465 SER A 67 REMARK 465 GLU A 68 REMARK 465 GLU A 69 REMARK 465 ASN A 70 REMARK 465 TYR A 161 REMARK 465 MET A 162 REMARK 465 LYS A 163 REMARK 465 ARG A 164 REMARK 465 MET A 165 REMARK 465 GLY A 166 REMARK 465 HIS A 167 REMARK 465 ARG A 168 REMARK 465 TRP A 169 REMARK 465 VAL A 170 REMARK 465 THR A 171 REMARK 465 ASP A 172 REMARK 465 LEU A 173 REMARK 465 LYS A 174 REMARK 465 LYS A 175 REMARK 465 LEU A 176 REMARK 465 ARG A 177 REMARK 465 THR A 178 REMARK 465 HIS A 199 REMARK 465 GLY A 200 REMARK 465 PHE A 201 REMARK 465 ALA A 202 REMARK 465 ALA A 203 REMARK 465 ASN A 204 REMARK 465 GLY A 205 REMARK 465 LYS A 206 REMARK 465 LYS A 207 REMARK 465 LYS A 208 REMARK 465 VAL A 209 REMARK 465 HIS A 210 REMARK 465 TYR A 211 REMARK 465 HIS A 291 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 SER B 31 REMARK 465 GLY B 32 REMARK 465 GLU B 33 REMARK 465 PRO B 34 REMARK 465 ARG B 35 REMARK 465 THR B 36 REMARK 465 ARG B 37 REMARK 465 ALA B 38 REMARK 465 GLU B 39 REMARK 465 ALA B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 TRP B 43 REMARK 465 VAL B 44 REMARK 465 ASP B 45 REMARK 465 GLU B 46 REMARK 465 ASP B 47 REMARK 465 LEU B 48 REMARK 465 LYS B 49 REMARK 465 ASP B 50 REMARK 465 SER B 51 REMARK 465 SER B 52 REMARK 465 ASP B 53 REMARK 465 LEU B 54 REMARK 465 HIS B 55 REMARK 465 GLN B 56 REMARK 465 ALA B 57 REMARK 465 GLU B 58 REMARK 465 GLU B 59 REMARK 465 ASP B 60 REMARK 465 ALA B 61 REMARK 465 ASP B 62 REMARK 465 GLU B 63 REMARK 465 TRP B 64 REMARK 465 GLN B 65 REMARK 465 GLU B 66 REMARK 465 SER B 67 REMARK 465 GLU B 68 REMARK 465 GLU B 69 REMARK 465 ASN B 70 REMARK 465 TYR B 161 REMARK 465 MET B 162 REMARK 465 LYS B 163 REMARK 465 ARG B 164 REMARK 465 MET B 165 REMARK 465 GLY B 166 REMARK 465 HIS B 167 REMARK 465 ARG B 168 REMARK 465 TRP B 169 REMARK 465 VAL B 170 REMARK 465 THR B 171 REMARK 465 ASP B 172 REMARK 465 LEU B 173 REMARK 465 LYS B 174 REMARK 465 LYS B 175 REMARK 465 LEU B 176 REMARK 465 ARG B 177 REMARK 465 THR B 178 REMARK 465 HIS B 199 REMARK 465 GLY B 200 REMARK 465 PHE B 201 REMARK 465 ALA B 202 REMARK 465 ALA B 203 REMARK 465 ASN B 204 REMARK 465 GLY B 205 REMARK 465 LYS B 206 REMARK 465 LYS B 207 REMARK 465 LYS B 208 REMARK 465 VAL B 209 REMARK 465 HIS B 210 REMARK 465 TYR B 211 REMARK 465 HIS B 291 REMARK 465 HIS B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 102 O2P FMN B 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 78 -70.90 -59.23 REMARK 500 GLU A 133 58.02 36.45 REMARK 500 ASN A 242 -18.35 76.75 REMARK 500 ALA A 255 -10.51 83.35 REMARK 500 HIS B 80 -2.43 91.19 REMARK 500 GLU B 133 60.91 34.61 REMARK 500 LEU B 260 -59.16 -120.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TTC RELATED DB: PDB DBREF 4TTB A 32 289 UNP Q6PHW0 IYD1_HUMAN 32 289 DBREF 4TTB B 32 289 UNP Q6PHW0 IYD1_HUMAN 32 289 SEQADV 4TTB SER A 31 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS A 290 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS A 291 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS A 292 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS A 293 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS A 294 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS A 295 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB SER B 31 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS B 290 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS B 291 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS B 292 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS B 293 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS B 294 UNP Q6PHW0 EXPRESSION TAG SEQADV 4TTB HIS B 295 UNP Q6PHW0 EXPRESSION TAG SEQRES 1 A 265 SER GLY GLU PRO ARG THR ARG ALA GLU ALA ARG PRO TRP SEQRES 2 A 265 VAL ASP GLU ASP LEU LYS ASP SER SER ASP LEU HIS GLN SEQRES 3 A 265 ALA GLU GLU ASP ALA ASP GLU TRP GLN GLU SER GLU GLU SEQRES 4 A 265 ASN VAL GLU HIS ILE PRO PHE SER HIS ASN HIS TYR PRO SEQRES 5 A 265 GLU LYS GLU MET VAL LYS ARG SER GLN GLU PHE TYR GLU SEQRES 6 A 265 LEU LEU ASN LYS ARG ARG SER VAL ARG PHE ILE SER ASN SEQRES 7 A 265 GLU GLN VAL PRO MET GLU VAL ILE ASP ASN VAL ILE ARG SEQRES 8 A 265 THR ALA GLY THR ALA PRO SER GLY ALA HIS THR GLU PRO SEQRES 9 A 265 TRP THR PHE VAL VAL VAL LYS ASP PRO ASP VAL LYS HIS SEQRES 10 A 265 LYS ILE ARG LYS ILE ILE GLU GLU GLU GLU GLU ILE ASN SEQRES 11 A 265 TYR MET LYS ARG MET GLY HIS ARG TRP VAL THR ASP LEU SEQRES 12 A 265 LYS LYS LEU ARG THR ASN TRP ILE LYS GLU TYR LEU ASP SEQRES 13 A 265 THR ALA PRO ILE LEU ILE LEU ILE PHE LYS GLN VAL HIS SEQRES 14 A 265 GLY PHE ALA ALA ASN GLY LYS LYS LYS VAL HIS TYR TYR SEQRES 15 A 265 ASN GLU ILE SER VAL SER ILE ALA CYS GLY ILE LEU LEU SEQRES 16 A 265 ALA ALA LEU GLN ASN ALA GLY LEU VAL THR VAL THR THR SEQRES 17 A 265 THR PRO LEU ASN CYS GLY PRO ARG LEU ARG VAL LEU LEU SEQRES 18 A 265 GLY ARG PRO ALA HIS GLU LYS LEU LEU MET LEU LEU PRO SEQRES 19 A 265 VAL GLY TYR PRO SER LYS GLU ALA THR VAL PRO ASP LEU SEQRES 20 A 265 LYS ARG LYS PRO LEU ASP GLN ILE MET VAL THR VAL HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 SER GLY GLU PRO ARG THR ARG ALA GLU ALA ARG PRO TRP SEQRES 2 B 265 VAL ASP GLU ASP LEU LYS ASP SER SER ASP LEU HIS GLN SEQRES 3 B 265 ALA GLU GLU ASP ALA ASP GLU TRP GLN GLU SER GLU GLU SEQRES 4 B 265 ASN VAL GLU HIS ILE PRO PHE SER HIS ASN HIS TYR PRO SEQRES 5 B 265 GLU LYS GLU MET VAL LYS ARG SER GLN GLU PHE TYR GLU SEQRES 6 B 265 LEU LEU ASN LYS ARG ARG SER VAL ARG PHE ILE SER ASN SEQRES 7 B 265 GLU GLN VAL PRO MET GLU VAL ILE ASP ASN VAL ILE ARG SEQRES 8 B 265 THR ALA GLY THR ALA PRO SER GLY ALA HIS THR GLU PRO SEQRES 9 B 265 TRP THR PHE VAL VAL VAL LYS ASP PRO ASP VAL LYS HIS SEQRES 10 B 265 LYS ILE ARG LYS ILE ILE GLU GLU GLU GLU GLU ILE ASN SEQRES 11 B 265 TYR MET LYS ARG MET GLY HIS ARG TRP VAL THR ASP LEU SEQRES 12 B 265 LYS LYS LEU ARG THR ASN TRP ILE LYS GLU TYR LEU ASP SEQRES 13 B 265 THR ALA PRO ILE LEU ILE LEU ILE PHE LYS GLN VAL HIS SEQRES 14 B 265 GLY PHE ALA ALA ASN GLY LYS LYS LYS VAL HIS TYR TYR SEQRES 15 B 265 ASN GLU ILE SER VAL SER ILE ALA CYS GLY ILE LEU LEU SEQRES 16 B 265 ALA ALA LEU GLN ASN ALA GLY LEU VAL THR VAL THR THR SEQRES 17 B 265 THR PRO LEU ASN CYS GLY PRO ARG LEU ARG VAL LEU LEU SEQRES 18 B 265 GLY ARG PRO ALA HIS GLU LYS LEU LEU MET LEU LEU PRO SEQRES 19 B 265 VAL GLY TYR PRO SER LYS GLU ALA THR VAL PRO ASP LEU SEQRES 20 B 265 LYS ARG LYS PRO LEU ASP GLN ILE MET VAL THR VAL HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS HET FMN A 301 31 HET FMN B 301 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *42(H2 O) HELIX 1 AA1 PRO A 82 LYS A 99 1 18 HELIX 2 AA2 PRO A 112 GLY A 124 1 13 HELIX 3 AA3 SER A 128 THR A 132 5 5 HELIX 4 AA4 ASP A 142 GLU A 158 1 17 HELIX 5 AA5 GLU A 183 ALA A 188 1 6 HELIX 6 AA6 ASN A 213 GLY A 232 1 20 HELIX 7 AA7 CYS A 243 LEU A 251 1 9 HELIX 8 AA8 PRO A 281 GLN A 284 5 4 HELIX 9 AA9 PRO B 82 LYS B 99 1 18 HELIX 10 AB1 PRO B 112 GLY B 124 1 13 HELIX 11 AB2 SER B 128 THR B 132 5 5 HELIX 12 AB3 ASP B 142 GLU B 158 1 17 HELIX 13 AB4 GLU B 183 ALA B 188 1 6 HELIX 14 AB5 ASN B 213 GLY B 232 1 20 HELIX 15 AB6 CYS B 243 LEU B 251 1 9 HELIX 16 AB7 PRO B 281 ILE B 285 1 5 SHEET 1 AA1 2 HIS A 73 PRO A 75 0 SHEET 2 AA1 2 THR B 273 PRO B 275 -1 O VAL B 274 N ILE A 74 SHEET 1 AA2 5 VAL A 234 THR A 235 0 SHEET 2 AA2 5 GLU A 257 GLY A 266 -1 O GLY A 266 N VAL A 234 SHEET 3 AA2 5 ILE A 190 GLN A 197 -1 N ILE A 190 O VAL A 265 SHEET 4 AA2 5 TRP A 135 VAL A 140 -1 N VAL A 138 O LEU A 193 SHEET 5 AA2 5 MET B 286 VAL B 289 1 O VAL B 287 N VAL A 139 SHEET 1 AA3 2 THR A 273 PRO A 275 0 SHEET 2 AA3 2 HIS B 73 PRO B 75 -1 O ILE B 74 N VAL A 274 SHEET 1 AA4 5 MET A 286 VAL A 289 0 SHEET 2 AA4 5 TRP B 135 VAL B 140 1 O VAL B 139 N VAL A 287 SHEET 3 AA4 5 ILE B 190 GLN B 197 -1 O LEU B 193 N VAL B 138 SHEET 4 AA4 5 GLU B 257 GLY B 266 -1 O LYS B 258 N LYS B 196 SHEET 5 AA4 5 VAL B 234 THR B 235 -1 N VAL B 234 O GLY B 266 SITE 1 AC1 14 ARG A 100 ARG A 101 SER A 102 ARG A 104 SITE 2 AC1 14 VAL A 236 THR A 237 THR A 239 ARG A 279 SITE 3 AC1 14 HOH A 405 PRO B 127 SER B 128 GLY B 129 SITE 4 AC1 14 HIS B 131 SER B 216 SITE 1 AC2 14 PRO A 127 SER A 128 GLY A 129 HIS A 131 SITE 2 AC2 14 SER A 216 ARG B 100 ARG B 101 SER B 102 SITE 3 AC2 14 ARG B 104 VAL B 236 THR B 237 THR B 239 SITE 4 AC2 14 ARG B 279 HOH B 407 CRYST1 72.892 72.892 95.515 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013719 0.007921 0.000000 0.00000 SCALE2 0.000000 0.015841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010470 0.00000