PDB Short entry for 4TUR HEADER TRANSFERASE,LYASE/DNA 24-JUN-14 4TUR TITLE HUMAN DNA POLYMERASE BETA INSERTING DCMPNPP OPPOSITE THE 5'G OF TITLE 2 CISPLATIN CROSSLINKED GS (PT-GG2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7,4.2.99.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*CP*CP*AP*CP*GP*GP*CP*CP*CP*AP*TP*CP*AP*CP*C)- COMPND 8 3'); COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*GP*GP*TP*GP*AP*TP*GP*GP*GP*C)-3'); COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*GP*TP*GP*GP*G)-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS DNA POLYMERASE, TRANSFERASE, LYASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.C.KOAG,S.LEE REVDAT 7 13-MAR-24 4TUR 1 SOURCE REVDAT 6 27-DEC-23 4TUR 1 REMARK LINK REVDAT 5 18-DEC-19 4TUR 1 REMARK REVDAT 4 20-SEP-17 4TUR 1 SOURCE JRNL REMARK REVDAT 3 19-NOV-14 4TUR 1 JRNL REVDAT 2 15-OCT-14 4TUR 1 JRNL REVDAT 1 01-OCT-14 4TUR 0 JRNL AUTH M.C.KOAG,L.LAI,S.LEE JRNL TITL STRUCTURAL BASIS FOR THE INEFFICIENT NUCLEOTIDE JRNL TITL 2 INCORPORATION OPPOSITE CISPLATIN-DNA LESION BY HUMAN DNA JRNL TITL 3 POLYMERASE BETA. JRNL REF J.BIOL.CHEM. V. 289 31341 2014 JRNL REFN ESSN 1083-351X JRNL PMID 25237188 JRNL DOI 10.1074/JBC.M114.605451 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 22933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8346 - 4.3248 1.00 2859 167 0.1571 0.1968 REMARK 3 2 4.3248 - 3.4386 1.00 2769 159 0.1817 0.2469 REMARK 3 3 3.4386 - 3.0056 0.99 2831 138 0.2206 0.2886 REMARK 3 4 3.0056 - 2.7316 0.98 2753 149 0.2387 0.3158 REMARK 3 5 2.7316 - 2.5362 0.97 2712 150 0.2402 0.2858 REMARK 3 6 2.5362 - 2.3869 0.96 2674 151 0.2378 0.2959 REMARK 3 7 2.3869 - 2.2676 0.94 2675 133 0.2439 0.2988 REMARK 3 8 2.2676 - 2.1690 0.89 2481 132 0.2422 0.2705 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3380 REMARK 3 ANGLE : 1.130 4687 REMARK 3 CHIRALITY : 0.039 518 REMARK 3 PLANARITY : 0.004 491 REMARK 3 DIHEDRAL : 20.131 1324 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23644 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.169 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG3400, AND 350 MM SODIUM ACETATE REMARK 280 IN 50 MM IMIDAZOLE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.66750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 8 CG CD OE1 NE2 REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 GLN A 207 CG CD OE1 NE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 ASN A 245 CG OD1 ND2 REMARK 470 ASP A 246 CG OD1 OD2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 599 O HOH A 600 2.12 REMARK 500 OG SER A 243 O HOH A 501 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 170 114.58 -163.31 REMARK 500 CYS A 178 -142.19 -109.42 REMARK 500 GLU A 203 48.36 -83.99 REMARK 500 ASN A 245 -62.20 74.53 REMARK 500 SER A 275 115.73 80.65 REMARK 500 ASN A 294 -166.92 -121.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 207 PRO A 208 130.74 REMARK 500 GLY A 274 SER A 275 -133.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 85.5 REMARK 620 3 VAL A 65 O 88.0 87.1 REMARK 620 4 HOH A 548 O 97.1 88.7 173.1 REMARK 620 5 DG D 3 OP1 175.0 95.5 87.1 87.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 101 O REMARK 620 2 VAL A 103 O 97.3 REMARK 620 3 ILE A 106 O 91.9 86.0 REMARK 620 4 HOH A 528 O 82.1 92.6 173.6 REMARK 620 5 DG P 9 OP1 163.4 98.3 94.8 91.6 REMARK 620 6 HOH P 117 O 74.1 169.5 88.3 92.2 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 0KX A 405 O1G 87.1 REMARK 620 3 0KX A 405 O2B 161.4 92.9 REMARK 620 4 0KX A 405 O1A 107.2 106.9 90.6 REMARK 620 5 HOH A 599 O 100.4 139.7 68.0 108.4 REMARK 620 6 HOH A 600 O 79.2 84.7 82.3 166.8 58.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD2 REMARK 620 2 ASP A 192 OD1 98.7 REMARK 620 3 0KX A 405 O1A 100.1 98.6 REMARK 620 4 DC P 10 O3' 121.1 136.8 90.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT T 101 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG T 6 N7 REMARK 620 2 CPT T 101 N1 172.2 REMARK 620 3 CPT T 101 N2 89.9 85.3 REMARK 620 4 DG T 7 N7 99.8 85.8 168.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0KX A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPT T 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TUP RELATED DB: PDB REMARK 900 RELATED ID: 4TUQ RELATED DB: PDB REMARK 900 RELATED ID: 4TUS RELATED DB: PDB DBREF 4TUR A 7 335 UNP P06746 DPOLB_HUMAN 7 335 DBREF 4TUR T 1 16 PDB 4TUR 4TUR 1 16 DBREF 4TUR P 1 10 PDB 4TUR 4TUR 1 10 DBREF 4TUR D 1 5 PDB 4TUR 4TUR 1 5 SEQRES 1 A 329 PRO GLN GLU THR LEU ASN GLY GLY ILE THR ASP MET LEU SEQRES 2 A 329 THR GLU LEU ALA ASN PHE GLU LYS ASN VAL SER GLN ALA SEQRES 3 A 329 ILE HIS LYS TYR ASN ALA TYR ARG LYS ALA ALA SER VAL SEQRES 4 A 329 ILE ALA LYS TYR PRO HIS LYS ILE LYS SER GLY ALA GLU SEQRES 5 A 329 ALA LYS LYS LEU PRO GLY VAL GLY THR LYS ILE ALA GLU SEQRES 6 A 329 LYS ILE ASP GLU PHE LEU ALA THR GLY LYS LEU ARG LYS SEQRES 7 A 329 LEU GLU LYS ILE ARG GLN ASP ASP THR SER SER SER ILE SEQRES 8 A 329 ASN PHE LEU THR ARG VAL SER GLY ILE GLY PRO SER ALA SEQRES 9 A 329 ALA ARG LYS PHE VAL ASP GLU GLY ILE LYS THR LEU GLU SEQRES 10 A 329 ASP LEU ARG LYS ASN GLU ASP LYS LEU ASN HIS HIS GLN SEQRES 11 A 329 ARG ILE GLY LEU LYS TYR PHE GLY ASP PHE GLU LYS ARG SEQRES 12 A 329 ILE PRO ARG GLU GLU MET LEU GLN MET GLN ASP ILE VAL SEQRES 13 A 329 LEU ASN GLU VAL LYS LYS VAL ASP SER GLU TYR ILE ALA SEQRES 14 A 329 THR VAL CYS GLY SER PHE ARG ARG GLY ALA GLU SER SER SEQRES 15 A 329 GLY ASP MET ASP VAL LEU LEU THR HIS PRO SER PHE THR SEQRES 16 A 329 SER GLU SER THR LYS GLN PRO LYS LEU LEU HIS GLN VAL SEQRES 17 A 329 VAL GLU GLN LEU GLN LYS VAL HIS PHE ILE THR ASP THR SEQRES 18 A 329 LEU SER LYS GLY GLU THR LYS PHE MET GLY VAL CYS GLN SEQRES 19 A 329 LEU PRO SER LYS ASN ASP GLU LYS GLU TYR PRO HIS ARG SEQRES 20 A 329 ARG ILE ASP ILE ARG LEU ILE PRO LYS ASP GLN TYR TYR SEQRES 21 A 329 CYS GLY VAL LEU TYR PHE THR GLY SER ASP ILE PHE ASN SEQRES 22 A 329 LYS ASN MET ARG ALA HIS ALA LEU GLU LYS GLY PHE THR SEQRES 23 A 329 ILE ASN GLU TYR THR ILE ARG PRO LEU GLY VAL THR GLY SEQRES 24 A 329 VAL ALA GLY GLU PRO LEU PRO VAL ASP SER GLU LYS ASP SEQRES 25 A 329 ILE PHE ASP TYR ILE GLN TRP LYS TYR ARG GLU PRO LYS SEQRES 26 A 329 ASP ARG SER GLU SEQRES 1 T 16 DC DC DC DA DC DG DG DC DC DC DA DT DC SEQRES 2 T 16 DA DC DC SEQRES 1 P 10 DG DG DT DG DA DT DG DG DG DC SEQRES 1 D 5 DG DT DG DG DG HET MG A 401 1 HET MG A 402 1 HET NA A 403 1 HET NA A 404 1 HET 0KX A 405 28 HET CPT T 101 3 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM 0KX 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY) HETNAM 2 0KX PHOSPHORYL]AMINO}PHOSPHORYL]CYTIDINE HETNAM CPT CISPLATIN HETSYN CPT DIAMMINE(DICHLORO)PLATINUM FORMUL 5 MG 2(MG 2+) FORMUL 7 NA 2(NA 1+) FORMUL 9 0KX C9 H17 N4 O12 P3 FORMUL 10 CPT CL2 H6 N2 PT FORMUL 11 HOH *145(H2 O) HELIX 1 AA1 ASN A 12 VAL A 29 1 18 HELIX 2 AA2 ALA A 32 LYS A 48 1 17 HELIX 3 AA3 SER A 55 LYS A 61 1 7 HELIX 4 AA4 GLY A 66 GLY A 80 1 15 HELIX 5 AA5 LEU A 82 ASP A 91 1 10 HELIX 6 AA6 ASP A 91 THR A 101 1 11 HELIX 7 AA7 GLY A 107 GLU A 117 1 11 HELIX 8 AA8 THR A 121 ASN A 128 1 8 HELIX 9 AA9 GLU A 129 LEU A 132 5 4 HELIX 10 AB1 ASN A 133 TYR A 142 1 10 HELIX 11 AB2 TYR A 142 GLU A 147 1 6 HELIX 12 AB3 ARG A 152 ASP A 170 1 19 HELIX 13 AB4 CYS A 178 ARG A 183 1 6 HELIX 14 AB5 PRO A 208 VAL A 221 1 14 HELIX 15 AB6 PRO A 261 ASP A 263 5 3 HELIX 16 AB7 GLN A 264 GLY A 274 1 11 HELIX 17 AB8 SER A 275 LYS A 289 1 15 HELIX 18 AB9 SER A 315 ILE A 323 1 9 HELIX 19 AC1 GLU A 329 ARG A 333 5 5 SHEET 1 AA1 2 ILE A 150 PRO A 151 0 SHEET 2 AA1 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 AA2 5 ILE A 174 VAL A 177 0 SHEET 2 AA2 5 MET A 191 THR A 196 -1 O THR A 196 N ILE A 174 SHEET 3 AA2 5 ARG A 253 LEU A 259 1 O ARG A 258 N LEU A 195 SHEET 4 AA2 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 AA2 5 ILE A 224 LYS A 230 -1 N SER A 229 O MET A 236 SHEET 1 AA3 2 PHE A 291 ILE A 293 0 SHEET 2 AA3 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 LINK O LYS A 60 NA NA A 404 1555 1555 2.43 LINK O LEU A 62 NA NA A 404 1555 1555 2.61 LINK O VAL A 65 NA NA A 404 1555 1555 2.41 LINK O THR A 101 NA NA A 403 1555 1555 2.31 LINK O VAL A 103 NA NA A 403 1555 1555 2.49 LINK O ILE A 106 NA NA A 403 1555 1555 2.43 LINK OD1 ASP A 190 MG MG A 401 1555 1555 1.96 LINK OD2 ASP A 190 MG MG A 402 1555 1555 2.33 LINK OD1 ASP A 192 MG MG A 402 1555 1555 2.46 LINK MG MG A 401 O1G 0KX A 405 1555 1555 2.01 LINK MG MG A 401 O2B 0KX A 405 1555 1555 2.01 LINK MG MG A 401 O1A 0KX A 405 1555 1555 2.06 LINK MG MG A 401 O HOH A 599 1555 1555 1.94 LINK MG MG A 401 O HOH A 600 1555 1555 2.35 LINK MG MG A 402 O1A 0KX A 405 1555 1555 2.23 LINK MG MG A 402 O3' DC P 10 1555 1555 2.37 LINK NA NA A 403 O HOH A 528 1555 1555 2.47 LINK NA NA A 403 OP1 DG P 9 1555 1555 2.29 LINK NA NA A 403 O HOH P 117 1555 1555 2.48 LINK NA NA A 404 O HOH A 548 1555 1555 2.47 LINK NA NA A 404 OP1 DG D 3 1555 1555 2.70 LINK N7 DG T 6 PT1 CPT T 101 1555 1555 2.48 LINK N7 DG T 7 PT1 CPT T 101 1555 1555 2.48 SITE 1 AC1 6 ASP A 190 ASP A 192 MG A 402 0KX A 405 SITE 2 AC1 6 HOH A 599 HOH A 600 SITE 1 AC2 6 ASP A 190 ASP A 192 ASP A 256 MG A 401 SITE 2 AC2 6 0KX A 405 DC P 10 SITE 1 AC3 6 THR A 101 VAL A 103 ILE A 106 HOH A 528 SITE 2 AC3 6 DG P 9 HOH P 117 SITE 1 AC4 5 LYS A 60 LEU A 62 VAL A 65 HOH A 548 SITE 2 AC4 5 DG D 3 SITE 1 AC5 24 ARG A 149 GLY A 179 SER A 180 ARG A 183 SITE 2 AC5 24 SER A 188 GLY A 189 ASP A 190 ASP A 192 SITE 3 AC5 24 TYR A 271 PHE A 272 THR A 273 GLY A 274 SITE 4 AC5 24 SER A 275 ASP A 276 ASN A 279 MG A 401 SITE 5 AC5 24 MG A 402 HOH A 542 HOH A 550 HOH A 599 SITE 6 AC5 24 HOH A 600 DC P 10 DG T 6 DG T 7 SITE 1 AC6 4 DG T 6 DG T 7 HOH T 204 HOH T 216 CRYST1 54.785 79.335 54.786 90.00 107.81 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018253 0.000000 0.005865 0.00000 SCALE2 0.000000 0.012605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019172 0.00000