PDB Short entry for 4TYW HEADER RNA BINDING PROTEIN/RNA 09-JUL-14 4TYW TITLE DEAD-BOX HELICASE MSS116 BOUND TO SSRNA AND ADP-BEF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 88-595; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: MSS116, YDR194C, YD9346.05C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAL-C2T; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_TAXID: 4932 KEYWDS DEAD-BOX, RNA HELICASE, HYDROLASE, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.L.MALLAM,D.J.SIDOTE,A.M.LAMBOWITZ REVDAT 4 27-SEP-23 4TYW 1 SOURCE REMARK LINK REVDAT 3 04-MAR-15 4TYW 1 JRNL REVDAT 2 21-JAN-15 4TYW 1 JRNL REVDAT 1 31-DEC-14 4TYW 0 JRNL AUTH A.L.MALLAM,D.J.SIDOTE,A.M.LAMBOWITZ JRNL TITL MOLECULAR INSIGHTS INTO RNA AND DNA HELICASE EVOLUTION FROM JRNL TITL 2 THE DETERMINANTS OF SPECIFICITY FOR A DEAD-BOX RNA HELICASE. JRNL REF ELIFE V. 3 04630 2014 JRNL REFN ESSN 2050-084X JRNL PMID 25497230 JRNL DOI 10.7554/ELIFE.04630 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 32642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2538 - 5.0281 1.00 2777 158 0.1835 0.1835 REMARK 3 2 5.0281 - 3.9916 1.00 2688 111 0.1721 0.2182 REMARK 3 3 3.9916 - 3.4872 1.00 2632 138 0.2057 0.2374 REMARK 3 4 3.4872 - 3.1685 1.00 2598 161 0.2298 0.2681 REMARK 3 5 3.1685 - 2.9414 1.00 2596 118 0.2402 0.3105 REMARK 3 6 2.9414 - 2.7680 1.00 2614 124 0.2336 0.3097 REMARK 3 7 2.7680 - 2.6294 1.00 2556 158 0.2359 0.2834 REMARK 3 8 2.6294 - 2.5149 1.00 2572 144 0.2482 0.3385 REMARK 3 9 2.5149 - 2.4181 0.99 2522 150 0.2527 0.3348 REMARK 3 10 2.4181 - 2.3347 0.97 2538 114 0.2729 0.2906 REMARK 3 11 2.3347 - 2.2617 0.97 2496 147 0.2946 0.3157 REMARK 3 12 2.2617 - 2.1970 0.94 2395 135 0.3366 0.3423 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4219 REMARK 3 ANGLE : 0.696 5737 REMARK 3 CHIRALITY : 0.028 676 REMARK 3 PLANARITY : 0.003 701 REMARK 3 DIHEDRAL : 11.885 1600 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32642 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.197 REMARK 200 RESOLUTION RANGE LOW (A) : 47.243 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.60300 REMARK 200 R SYM FOR SHELL (I) : 0.44400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3I5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 2 % TACSIMATE PH REMARK 280 7.0, 20 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.91450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.91450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 87 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 SER A 99 OG REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LEU A 108 CG CD1 CD2 REMARK 470 GLU A 109 CD OE1 OE2 REMARK 470 SER A 142 OG REMARK 470 SER A 143 OG REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 GLN A 313 CG CD OE1 NE2 REMARK 470 LEU A 315 CG CD1 CD2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ASN A 334 CG OD1 ND2 REMARK 470 GLU A 350 CD OE1 OE2 REMARK 470 LYS A 424 CD CE NZ REMARK 470 LYS A 482 CD CE NZ REMARK 470 ARG A 489 CD NE CZ NH1 NH2 REMARK 470 LYS A 495 CG CD CE NZ REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 ARG A 549 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 567 CG CD OE1 NE2 REMARK 470 ARG A 575 CD NE CZ NH1 NH2 REMARK 470 LEU A 577 CG CD1 CD2 REMARK 470 LYS A 589 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 99 -179.67 63.84 REMARK 500 SER A 142 -165.44 -68.23 REMARK 500 THR A 173 16.75 -142.14 REMARK 500 SER A 177 -53.55 65.90 REMARK 500 GLN A 178 -62.35 64.14 REMARK 500 ASP A 309 -142.64 -137.66 REMARK 500 ASP A 565 81.43 -154.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 442 O REMARK 620 2 ARG A 466 O 110.0 REMARK 620 3 HOH A 765 O 130.6 116.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 604 O2B REMARK 620 2 HOH A 799 O 80.8 REMARK 620 3 HOH A 800 O 108.3 169.8 REMARK 620 4 HOH A 801 O 170.2 89.5 81.3 REMARK 620 5 HOH A 802 O 91.5 95.8 88.5 90.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TYN RELATED DB: PDB REMARK 900 RELATED ID: 4TYY RELATED DB: PDB REMARK 900 RELATED ID: 4TZ0 RELATED DB: PDB REMARK 900 RELATED ID: 4TZ6 RELATED DB: PDB DBREF 4TYW A 88 595 UNP P15424 MS116_YEAST 88 595 DBREF 4TYW B 1 7 PDB 4TYW 4TYW 1 7 SEQADV 4TYW GLY A 87 UNP P15424 EXPRESSION TAG SEQRES 1 A 509 GLY SER LYS LEU ILE HIS VAL PRO LYS GLU ASP ASN SER SEQRES 2 A 509 LYS GLU VAL THR LEU ASP SER LEU LEU GLU GLU GLY VAL SEQRES 3 A 509 LEU ASP LYS GLU ILE HIS LYS ALA ILE THR ARG MET GLU SEQRES 4 A 509 PHE PRO GLY LEU THR PRO VAL GLN GLN LYS THR ILE LYS SEQRES 5 A 509 PRO ILE LEU SER SER GLU ASP HIS ASP VAL ILE ALA ARG SEQRES 6 A 509 ALA LYS THR GLY THR GLY LYS THR PHE ALA PHE LEU ILE SEQRES 7 A 509 PRO ILE PHE GLN HIS LEU ILE ASN THR LYS PHE ASP SER SEQRES 8 A 509 GLN TYR MET VAL LYS ALA VAL ILE VAL ALA PRO THR ARG SEQRES 9 A 509 ASP LEU ALA LEU GLN ILE GLU ALA GLU VAL LYS LYS ILE SEQRES 10 A 509 HIS ASP MET ASN TYR GLY LEU LYS LYS TYR ALA CYS VAL SEQRES 11 A 509 SER LEU VAL GLY GLY THR ASP PHE ARG ALA ALA MET ASN SEQRES 12 A 509 LYS MET ASN LYS LEU ARG PRO ASN ILE VAL ILE ALA THR SEQRES 13 A 509 PRO GLY ARG LEU ILE ASP VAL LEU GLU LYS TYR SER ASN SEQRES 14 A 509 LYS PHE PHE ARG PHE VAL ASP TYR LYS VAL LEU ASP GLU SEQRES 15 A 509 ALA ASP ARG LEU LEU GLU ILE GLY PHE ARG ASP ASP LEU SEQRES 16 A 509 GLU THR ILE SER GLY ILE LEU ASN GLU LYS ASN SER LYS SEQRES 17 A 509 SER ALA ASP ASN ILE LYS THR LEU LEU PHE SER ALA THR SEQRES 18 A 509 LEU ASP ASP LYS VAL GLN LYS LEU ALA ASN ASN ILE MET SEQRES 19 A 509 ASN LYS LYS GLU CYS LEU PHE LEU ASP THR VAL ASP LYS SEQRES 20 A 509 ASN GLU PRO GLU ALA HIS GLU ARG ILE ASP GLN SER VAL SEQRES 21 A 509 VAL ILE SER GLU LYS PHE ALA ASN SER ILE PHE ALA ALA SEQRES 22 A 509 VAL GLU HIS ILE LYS LYS GLN ILE LYS GLU ARG ASP SER SEQRES 23 A 509 ASN TYR LYS ALA ILE ILE PHE ALA PRO THR VAL LYS PHE SEQRES 24 A 509 THR SER PHE LEU CYS SER ILE LEU LYS ASN GLU PHE LYS SEQRES 25 A 509 LYS ASP LEU PRO ILE LEU GLU PHE HIS GLY LYS ILE THR SEQRES 26 A 509 GLN ASN LYS ARG THR SER LEU VAL LYS ARG PHE LYS LYS SEQRES 27 A 509 ASP GLU SER GLY ILE LEU VAL CYS THR ASP VAL GLY ALA SEQRES 28 A 509 ARG GLY MET ASP PHE PRO ASN VAL HIS GLU VAL LEU GLN SEQRES 29 A 509 ILE GLY VAL PRO SER GLU LEU ALA ASN TYR ILE HIS ARG SEQRES 30 A 509 ILE GLY ARG THR ALA ARG SER GLY LYS GLU GLY SER SER SEQRES 31 A 509 VAL LEU PHE ILE CYS LYS ASP GLU LEU PRO PHE VAL ARG SEQRES 32 A 509 GLU LEU GLU ASP ALA LYS ASN ILE VAL ILE ALA LYS GLN SEQRES 33 A 509 GLU LYS TYR GLU PRO SER GLU GLU ILE LYS SER GLU VAL SEQRES 34 A 509 LEU GLU ALA VAL THR GLU GLU PRO GLU ASP ILE SER ASP SEQRES 35 A 509 ILE VAL ILE SER LEU ILE SER SER TYR ARG SER CYS ILE SEQRES 36 A 509 LYS GLU TYR ARG PHE SER GLU ARG ARG ILE LEU PRO GLU SEQRES 37 A 509 ILE ALA SER THR TYR GLY VAL LEU LEU ASN ASP PRO GLN SEQRES 38 A 509 LEU LYS ILE PRO VAL SER ARG ARG PHE LEU ASP LYS LEU SEQRES 39 A 509 GLY LEU SER ARG SER PRO ILE GLY LYS ALA MET PHE GLU SEQRES 40 A 509 ILE ARG SEQRES 1 B 7 A A A A A A A HET MG A 601 1 HET MG A 602 1 HET BEF A 603 4 HET ADP A 604 39 HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 5 BEF BE F3 1- FORMUL 6 ADP C10 H15 N5 O10 P2 FORMUL 7 HOH *115(H2 O) HELIX 1 AA1 THR A 103 GLU A 110 1 8 HELIX 2 AA2 ASP A 114 ARG A 123 1 10 HELIX 3 AA3 THR A 130 SER A 142 1 13 HELIX 4 AA4 GLY A 157 ASN A 172 1 16 HELIX 5 AA5 THR A 189 ASN A 207 1 19 HELIX 6 AA6 TYR A 208 TYR A 213 5 6 HELIX 7 AA7 ASP A 223 ARG A 235 1 13 HELIX 8 AA8 THR A 242 PHE A 258 1 17 HELIX 9 AA9 GLU A 268 LEU A 273 1 6 HELIX 10 AB1 PHE A 277 ASN A 292 1 16 HELIX 11 AB2 ASP A 310 ALA A 316 1 7 HELIX 12 AB3 ASN A 354 ASP A 371 1 18 HELIX 13 AB4 THR A 382 LYS A 398 1 17 HELIX 14 AB5 THR A 411 ASP A 425 1 15 HELIX 15 AB6 ASP A 434 ALA A 437 5 4 HELIX 16 AB7 ALA A 458 GLY A 465 1 8 HELIX 17 AB8 GLU A 484 ASN A 496 1 13 HELIX 18 AB9 SER A 508 ALA A 518 1 11 HELIX 19 AC1 GLU A 522 SER A 539 1 18 HELIX 20 AC2 SER A 547 SER A 557 1 11 HELIX 21 AC3 SER A 557 LEU A 563 1 7 HELIX 22 AC4 SER A 573 GLY A 581 1 9 HELIX 23 AC5 SER A 585 MET A 591 1 7 SHEET 1 AA1 8 LYS A 89 VAL A 93 0 SHEET 2 AA1 8 GLU A 324 ASP A 329 1 O CYS A 325 N ILE A 91 SHEET 3 AA1 8 HIS A 146 ARG A 151 1 N ILE A 149 O LEU A 326 SHEET 4 AA1 8 LYS A 300 SER A 305 1 O LEU A 303 N ALA A 150 SHEET 5 AA1 8 TYR A 263 ASP A 267 1 N LEU A 266 O LEU A 302 SHEET 6 AA1 8 ALA A 183 VAL A 186 1 N VAL A 186 O VAL A 265 SHEET 7 AA1 8 ILE A 238 ALA A 241 1 O VAL A 239 N ILE A 185 SHEET 8 AA1 8 CYS A 215 LEU A 218 1 N LEU A 218 O ILE A 240 SHEET 1 AA2 7 ILE A 403 PHE A 406 0 SHEET 2 AA2 7 GLY A 428 CYS A 432 1 O VAL A 431 N LEU A 404 SHEET 3 AA2 7 LYS A 375 PHE A 379 1 N ILE A 378 O LEU A 430 SHEET 4 AA2 7 GLU A 447 ILE A 451 1 O LEU A 449 N ILE A 377 SHEET 5 AA2 7 GLY A 474 CYS A 481 1 O PHE A 479 N GLN A 450 SHEET 6 AA2 7 ILE A 342 SER A 349 1 N VAL A 347 O LEU A 478 SHEET 7 AA2 7 LYS A 501 TYR A 505 1 O GLU A 503 N ILE A 348 SHEET 1 AA3 2 ILE A 570 VAL A 572 0 SHEET 2 AA3 2 PHE A 592 ILE A 594 1 O GLU A 593 N ILE A 570 LINK O PHE A 442 MG MG A 602 1555 1555 2.38 LINK O ARG A 466 MG MG A 602 1555 1555 2.68 LINK MG MG A 601 O2B ADP A 604 1555 1555 2.10 LINK MG MG A 601 O HOH A 799 1555 1555 2.07 LINK MG MG A 601 O HOH A 800 1555 1555 2.09 LINK MG MG A 601 O HOH A 801 1555 1555 2.07 LINK MG MG A 601 O HOH A 802 1555 1555 2.05 LINK MG MG A 602 O HOH A 765 1555 1555 2.80 SITE 1 AC1 6 BEF A 603 ADP A 604 HOH A 799 HOH A 800 SITE 2 AC1 6 HOH A 801 HOH A 802 SITE 1 AC2 6 PHE A 442 ASN A 444 VAL A 445 ARG A 466 SITE 2 AC2 6 ARG A 469 HOH A 765 SITE 1 AC3 13 THR A 154 LYS A 158 GLU A 268 GLY A 439 SITE 2 AC3 13 ARG A 466 ARG A 469 MG A 601 ADP A 604 SITE 3 AC3 13 HOH A 710 HOH A 711 HOH A 799 HOH A 800 SITE 4 AC3 13 HOH A 801 SITE 1 AC4 17 PHE A 126 GLY A 128 THR A 130 GLN A 133 SITE 2 AC4 17 GLY A 155 THR A 156 GLY A 157 LYS A 158 SITE 3 AC4 17 THR A 159 ASP A 441 ARG A 469 SER A 470 SITE 4 AC4 17 MG A 601 BEF A 603 HOH A 728 HOH A 799 SITE 5 AC4 17 HOH A 802 CRYST1 89.829 126.260 55.545 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018003 0.00000