PDB Short entry for 4TZ6 HEADER RNA BINDING PROTEIN/RNA 09-JUL-14 4TZ6 TITLE DEAD-BOX HELICASE MSS116 BOUND TO SSRNA AND UDP-BEF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 88-596; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: MSS116, YDR194C, YD9346.05C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMAL-C2T; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 15 ORGANISM_TAXID: 4932 KEYWDS DEAD-BOX, RNA HELICASE, HYDROLASE, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.L.MALLAM,D.J.SIDOTE,A.M.LAMBOWITZ REVDAT 5 27-SEP-23 4TZ6 1 REMARK REVDAT 4 30-MAR-22 4TZ6 1 SOURCE REMARK REVDAT 3 04-MAR-15 4TZ6 1 JRNL REVDAT 2 04-FEB-15 4TZ6 1 JRNL REVDAT 1 28-JAN-15 4TZ6 0 JRNL AUTH A.L.MALLAM,D.J.SIDOTE,A.M.LAMBOWITZ JRNL TITL MOLECULAR INSIGHTS INTO RNA AND DNA HELICASE EVOLUTION FROM JRNL TITL 2 THE DETERMINANTS OF SPECIFICITY FOR A DEAD-BOX RNA HELICASE. JRNL REF ELIFE V. 3 04630 2014 JRNL REFN ESSN 2050-084X JRNL PMID 25497230 JRNL DOI 10.7554/ELIFE.04630 REMARK 2 REMARK 2 RESOLUTION. 3.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1583) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 10514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2160 - 5.0916 1.00 2687 140 0.2119 0.2658 REMARK 3 2 5.0916 - 4.0420 1.00 2572 140 0.1992 0.2148 REMARK 3 3 4.0420 - 3.5313 1.00 2557 108 0.2368 0.3031 REMARK 3 4 3.5313 - 3.2090 0.87 2193 117 0.2593 0.3736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4085 REMARK 3 ANGLE : 0.753 5575 REMARK 3 CHIRALITY : 0.031 667 REMARK 3 PLANARITY : 0.003 686 REMARK 3 DIHEDRAL : 13.108 1504 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TZ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10514 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.209 REMARK 200 RESOLUTION RANGE LOW (A) : 47.211 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.19800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3I5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M DL-MALIC ACID, PH 7.0, 12 % PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.87850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.25300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.87850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.25300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 97 REMARK 465 ASN A 98 REMARK 465 SER A 99 REMARK 465 LYS A 100 REMARK 465 ASP A 596 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 88 OG REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ILE A 91 CG1 CG2 CD1 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 LEU A 104 CG CD1 CD2 REMARK 470 LEU A 113 CG CD1 CD2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 LYS A 138 CE NZ REMARK 470 HIS A 146 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 ARG A 278 CZ REMARK 470 ASP A 309 CG OD1 OD2 REMARK 470 LYS A 311 CD CE NZ REMARK 470 GLN A 313 CG CD OE1 NE2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ASN A 334 CG OD1 ND2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 GLU A 369 CG CD OE1 OE2 REMARK 470 LYS A 409 CE NZ REMARK 470 LYS A 414 CD CE NZ REMARK 470 GLU A 473 CD OE1 OE2 REMARK 470 LYS A 482 CG CD CE NZ REMARK 470 LEU A 485 CG CD1 CD2 REMARK 470 ARG A 489 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 495 CG CD CE NZ REMARK 470 ASN A 496 CG OD1 ND2 REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 GLU A 506 CG CD OE1 OE2 REMARK 470 GLU A 509 CG CD OE1 OE2 REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 ARG A 545 CD NE CZ NH1 NH2 REMARK 470 GLU A 548 CG CD OE1 OE2 REMARK 470 ARG A 549 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 550 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 567 CG CD OE1 NE2 REMARK 470 ARG A 574 CZ NH1 NH2 REMARK 470 ARG A 575 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 577 CG CD1 CD2 REMARK 470 LYS A 579 CG CD CE NZ REMARK 470 LEU A 580 CG CD1 CD2 REMARK 470 LEU A 582 CG CD1 CD2 REMARK 470 ARG A 584 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 587 CG1 CG2 CD1 REMARK 470 LYS A 589 CG CD CE NZ REMARK 470 ARG A 595 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 484 HH TYR A 537 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 173 18.85 -141.67 REMARK 500 SER A 177 -5.99 67.55 REMARK 500 GLN A 178 -56.47 4.19 REMARK 500 ASP A 309 -141.24 -137.20 REMARK 500 SER A 372 -0.16 65.71 REMARK 500 ASP A 565 81.95 -153.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TYN RELATED DB: PDB REMARK 900 RELATED ID: 4TYW RELATED DB: PDB REMARK 900 RELATED ID: 4TYY RELATED DB: PDB REMARK 900 RELATED ID: 4TZ0 RELATED DB: PDB DBREF 4TZ6 A 88 596 UNP P15424 MS116_YEAST 88 596 DBREF 4TZ6 B -1 5 PDB 4TZ6 4TZ6 -1 5 SEQRES 1 A 509 SER LYS LEU ILE HIS VAL PRO LYS GLU ASP ASN SER LYS SEQRES 2 A 509 GLU VAL THR LEU ASP SER LEU LEU GLU GLU GLY VAL LEU SEQRES 3 A 509 ASP LYS GLU ILE HIS LYS ALA ILE THR ARG MET GLU PHE SEQRES 4 A 509 PRO GLY LEU THR PRO VAL GLN GLN LYS THR ILE LYS PRO SEQRES 5 A 509 ILE LEU SER SER GLU ASP HIS ASP VAL ILE ALA ARG ALA SEQRES 6 A 509 LYS THR GLY THR GLY LYS THR PHE ALA PHE LEU ILE PRO SEQRES 7 A 509 ILE PHE GLN HIS LEU ILE ASN THR LYS PHE ASP SER GLN SEQRES 8 A 509 TYR MET VAL LYS ALA VAL ILE VAL ALA PRO THR ARG ASP SEQRES 9 A 509 LEU ALA LEU GLN ILE GLU ALA GLU VAL LYS LYS ILE HIS SEQRES 10 A 509 ASP MET ASN TYR GLY LEU LYS LYS TYR ALA CYS VAL SER SEQRES 11 A 509 LEU VAL GLY GLY THR ASP PHE ARG ALA ALA MET ASN LYS SEQRES 12 A 509 MET ASN LYS LEU ARG PRO ASN ILE VAL ILE ALA THR PRO SEQRES 13 A 509 GLY ARG LEU ILE ASP VAL LEU GLU LYS TYR SER ASN LYS SEQRES 14 A 509 PHE PHE ARG PHE VAL ASP TYR LYS VAL LEU ASP GLU ALA SEQRES 15 A 509 ASP ARG LEU LEU GLU ILE GLY PHE ARG ASP ASP LEU GLU SEQRES 16 A 509 THR ILE SER GLY ILE LEU ASN GLU LYS ASN SER LYS SER SEQRES 17 A 509 ALA ASP ASN ILE LYS THR LEU LEU PHE SER ALA THR LEU SEQRES 18 A 509 ASP ASP LYS VAL GLN LYS LEU ALA ASN ASN ILE MET ASN SEQRES 19 A 509 LYS LYS GLU CYS LEU PHE LEU ASP THR VAL ASP LYS ASN SEQRES 20 A 509 GLU PRO GLU ALA HIS GLU ARG ILE ASP GLN SER VAL VAL SEQRES 21 A 509 ILE SER GLU LYS PHE ALA ASN SER ILE PHE ALA ALA VAL SEQRES 22 A 509 GLU HIS ILE LYS LYS GLN ILE LYS GLU ARG ASP SER ASN SEQRES 23 A 509 TYR LYS ALA ILE ILE PHE ALA PRO THR VAL LYS PHE THR SEQRES 24 A 509 SER PHE LEU CYS SER ILE LEU LYS ASN GLU PHE LYS LYS SEQRES 25 A 509 ASP LEU PRO ILE LEU GLU PHE HIS GLY LYS ILE THR GLN SEQRES 26 A 509 ASN LYS ARG THR SER LEU VAL LYS ARG PHE LYS LYS ASP SEQRES 27 A 509 GLU SER GLY ILE LEU VAL CYS THR ASP VAL GLY ALA ARG SEQRES 28 A 509 GLY MET ASP PHE PRO ASN VAL HIS GLU VAL LEU GLN ILE SEQRES 29 A 509 GLY VAL PRO SER GLU LEU ALA ASN TYR ILE HIS ARG ILE SEQRES 30 A 509 GLY ARG THR ALA ARG SER GLY LYS GLU GLY SER SER VAL SEQRES 31 A 509 LEU PHE ILE CYS LYS ASP GLU LEU PRO PHE VAL ARG GLU SEQRES 32 A 509 LEU GLU ASP ALA LYS ASN ILE VAL ILE ALA LYS GLN GLU SEQRES 33 A 509 LYS TYR GLU PRO SER GLU GLU ILE LYS SER GLU VAL LEU SEQRES 34 A 509 GLU ALA VAL THR GLU GLU PRO GLU ASP ILE SER ASP ILE SEQRES 35 A 509 VAL ILE SER LEU ILE SER SER TYR ARG SER CYS ILE LYS SEQRES 36 A 509 GLU TYR ARG PHE SER GLU ARG ARG ILE LEU PRO GLU ILE SEQRES 37 A 509 ALA SER THR TYR GLY VAL LEU LEU ASN ASP PRO GLN LEU SEQRES 38 A 509 LYS ILE PRO VAL SER ARG ARG PHE LEU ASP LYS LEU GLY SEQRES 39 A 509 LEU SER ARG SER PRO ILE GLY LYS ALA MET PHE GLU ILE SEQRES 40 A 509 ARG ASP SEQRES 1 B 7 A A A A A A A HET BEF A 601 4 HET UDP A 602 36 HET MG A 603 1 HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 BEF BE F3 1- FORMUL 4 UDP C9 H14 N2 O12 P2 FORMUL 5 MG MG 2+ HELIX 1 AA1 THR A 103 GLU A 110 1 8 HELIX 2 AA2 ASP A 114 ARG A 123 1 10 HELIX 3 AA3 THR A 130 SER A 142 1 13 HELIX 4 AA4 LYS A 158 ASN A 172 1 15 HELIX 5 AA5 THR A 189 ASN A 207 1 19 HELIX 6 AA6 TYR A 208 LYS A 211 5 4 HELIX 7 AA7 ASP A 223 ARG A 235 1 13 HELIX 8 AA8 THR A 242 PHE A 258 1 17 HELIX 9 AA9 GLU A 268 LEU A 273 1 6 HELIX 10 AB1 PHE A 277 ASN A 292 1 16 HELIX 11 AB2 ASP A 310 ALA A 316 1 7 HELIX 12 AB3 ALA A 353 ARG A 370 1 18 HELIX 13 AB4 THR A 382 LYS A 398 1 17 HELIX 14 AB5 THR A 411 ASP A 425 1 15 HELIX 15 AB6 ASP A 434 ALA A 437 5 4 HELIX 16 AB7 LEU A 457 GLY A 465 1 9 HELIX 17 AB8 GLU A 484 ASN A 496 1 13 HELIX 18 AB9 SER A 508 ALA A 518 1 11 HELIX 19 AC1 GLU A 522 SER A 539 1 18 HELIX 20 AC2 SER A 547 LEU A 563 1 17 HELIX 21 AC3 SER A 573 GLY A 581 1 9 HELIX 22 AC4 SER A 585 MET A 591 1 7 SHEET 1 AA1 8 LEU A 90 VAL A 93 0 SHEET 2 AA1 8 GLU A 324 ASP A 329 1 O CYS A 325 N ILE A 91 SHEET 3 AA1 8 HIS A 146 ARG A 151 1 N ILE A 149 O LEU A 328 SHEET 4 AA1 8 LYS A 300 SER A 305 1 O LEU A 303 N ALA A 150 SHEET 5 AA1 8 TYR A 263 ASP A 267 1 N LEU A 266 O LEU A 302 SHEET 6 AA1 8 ALA A 183 VAL A 186 1 N VAL A 186 O VAL A 265 SHEET 7 AA1 8 ILE A 238 ALA A 241 1 O VAL A 239 N ILE A 185 SHEET 8 AA1 8 CYS A 215 LEU A 218 1 N LEU A 218 O ILE A 240 SHEET 1 AA2 7 ILE A 403 PHE A 406 0 SHEET 2 AA2 7 GLY A 428 CYS A 432 1 O VAL A 431 N LEU A 404 SHEET 3 AA2 7 LYS A 375 PHE A 379 1 N ALA A 376 O LEU A 430 SHEET 4 AA2 7 GLU A 447 ILE A 451 1 O LEU A 449 N PHE A 379 SHEET 5 AA2 7 GLY A 474 CYS A 481 1 O PHE A 479 N GLN A 450 SHEET 6 AA2 7 ILE A 342 SER A 349 1 N VAL A 347 O LEU A 478 SHEET 7 AA2 7 LYS A 501 TYR A 505 1 O GLU A 503 N ILE A 348 SHEET 1 AA3 2 ILE A 570 VAL A 572 0 SHEET 2 AA3 2 PHE A 592 ILE A 594 1 O GLU A 593 N ILE A 570 LINK O2B UDP A 602 MG MG A 603 1555 1555 2.39 CISPEP 1 SER A 88 LYS A 89 0 -1.38 SITE 1 AC1 8 THR A 154 LYS A 158 GLU A 268 GLY A 439 SITE 2 AC1 8 ARG A 466 ARG A 469 UDP A 602 MG A 603 SITE 1 AC2 13 PHE A 126 GLY A 128 LEU A 129 GLN A 133 SITE 2 AC2 13 GLY A 155 THR A 156 GLY A 157 LYS A 158 SITE 3 AC2 13 THR A 159 ARG A 469 SER A 470 BEF A 601 SITE 4 AC2 13 MG A 603 SITE 1 AC3 4 ASP A 267 GLU A 268 BEF A 601 UDP A 602 CRYST1 89.757 126.506 55.510 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011141 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018015 0.00000