PDB Short entry for 4TZ7 HEADER TRANSFERASE 09-JUL-14 4TZ7 TITLE CRYSTAL STRUCTURE OF TYPE I PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE TITLE 2 ALPHA FROM ZEBRAFISH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE, TYPE I, ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 49-431; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: PIP5K1AA, PIP5K1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HU,Y.QIN,J.WANG,L.LI,D.WU,Y.HA REVDAT 3 27-DEC-23 4TZ7 1 REMARK REVDAT 2 23-SEP-15 4TZ7 1 TITLE JRNL REVDAT 1 02-SEP-15 4TZ7 0 JRNL AUTH J.HU,Q.YUAN,X.KANG,Y.QIN,L.LI,Y.HA,D.WU JRNL TITL RESOLUTION OF STRUCTURE OF PIP5K1A REVEALS MOLECULAR JRNL TITL 2 MECHANISM FOR ITS REGULATION BY DIMERIZATION AND JRNL TITL 3 DISHEVELLED. JRNL REF NAT COMMUN V. 6 8205 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26365782 JRNL DOI 10.1038/NCOMMS9205 REMARK 2 REMARK 2 RESOLUTION. 3.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 8877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.467 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.306 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.925 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2343 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2092 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3174 ; 1.404 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4790 ; 0.828 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 6.761 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;37.345 ;23.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 350 ;19.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.067 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2704 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 566 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1208 ; 4.248 ; 7.274 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1207 ; 4.250 ; 7.272 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1503 ; 6.780 ;10.898 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1504 ; 6.778 ;10.899 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1135 ; 4.982 ; 7.632 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1136 ; 4.979 ; 7.633 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1671 ; 7.900 ;11.286 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2639 ;10.760 ;58.556 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2634 ;10.768 ;58.506 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 426 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9591 111.0543 19.1663 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.4903 REMARK 3 T33: 0.1093 T12: -0.2104 REMARK 3 T13: 0.0292 T23: -0.1515 REMARK 3 L TENSOR REMARK 3 L11: 5.0059 L22: 3.0252 REMARK 3 L33: 3.7870 L12: -2.4547 REMARK 3 L13: 0.2379 L23: 0.7286 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: -1.0528 S13: 0.3421 REMARK 3 S21: 0.4723 S22: 0.1137 S23: -0.3245 REMARK 3 S31: -0.0169 S32: -0.1481 S33: -0.0922 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8877 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 20,000, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.53700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.47300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.47300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 117.80550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.47300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.47300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.26850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.47300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.47300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 117.80550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.47300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.47300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.26850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.53700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -88.94600 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 88.94600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 46 REMARK 465 ALA A 47 REMARK 465 SER A 48 REMARK 465 THR A 49 REMARK 465 GLY A 50 REMARK 465 GLU A 51 REMARK 465 THR A 52 REMARK 465 THR A 53 REMARK 465 TYR A 54 REMARK 465 LYS A 55 REMARK 465 LYS A 56 REMARK 465 GLY A 154 REMARK 465 ALA A 155 REMARK 465 SER A 156 REMARK 465 HIS A 310 REMARK 465 ARG A 311 REMARK 465 ALA A 312 REMARK 465 GLY A 313 REMARK 465 GLU A 314 REMARK 465 GLU A 315 REMARK 465 ALA A 316 REMARK 465 SER A 317 REMARK 465 THR A 318 REMARK 465 ALA A 319 REMARK 465 VAL A 320 REMARK 465 PRO A 321 REMARK 465 ASP A 322 REMARK 465 THR A 323 REMARK 465 GLN A 324 REMARK 465 LYS A 325 REMARK 465 LYS A 326 REMARK 465 GLY A 327 REMARK 465 GLN A 328 REMARK 465 GLY A 329 REMARK 465 GLN A 330 REMARK 465 LYS A 331 REMARK 465 PRO A 332 REMARK 465 LEU A 333 REMARK 465 TYR A 334 REMARK 465 CYS A 335 REMARK 465 THR A 336 REMARK 465 ALA A 337 REMARK 465 ILE A 338 REMARK 465 GLU A 339 REMARK 465 SER A 340 REMARK 465 ILE A 341 REMARK 465 GLN A 342 REMARK 465 GLY A 343 REMARK 465 GLU A 344 REMARK 465 SER A 345 REMARK 465 LYS A 346 REMARK 465 SER A 347 REMARK 465 LYS A 348 REMARK 465 THR A 349 REMARK 465 SER A 350 REMARK 465 PRO A 351 REMARK 465 GLN A 352 REMARK 465 PRO A 353 REMARK 465 TYR A 354 REMARK 465 GLU A 355 REMARK 465 SER A 356 REMARK 465 LEU A 385 REMARK 465 VAL A 386 REMARK 465 LYS A 387 REMARK 465 LYS A 388 REMARK 465 LEU A 389 REMARK 465 GLU A 390 REMARK 465 HIS A 391 REMARK 465 SER A 392 REMARK 465 TRP A 393 REMARK 465 LYS A 394 REMARK 465 ALA A 395 REMARK 465 LEU A 396 REMARK 465 LEU A 397 REMARK 465 HIS A 398 REMARK 465 ASP A 399 REMARK 465 GLY A 400 REMARK 465 ASP A 401 REMARK 465 SER A 427 REMARK 465 GLN A 428 REMARK 465 LEU A 429 REMARK 465 LYS A 430 REMARK 465 THR A 431 REMARK 465 LEU A 432 REMARK 465 GLU A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 57 OG1 CG2 REMARK 470 THR A 58 OG1 CG2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 LEU A 68 CG CD1 CD2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLN A 101 CG CD OE1 NE2 REMARK 470 SER A 103 OG REMARK 470 THR A 106 OG1 CG2 REMARK 470 HIS A 109 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 110 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 111 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 VAL A 209 CG1 CG2 REMARK 470 ASP A 212 CG OD1 OD2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 ILE A 216 CG1 CG2 CD1 REMARK 470 VAL A 229 CG1 CG2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 VAL A 255 CG1 CG2 REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 ASN A 275 CG OD1 ND2 REMARK 470 THR A 279 OG1 CG2 REMARK 470 SER A 282 OG REMARK 470 ILE A 306 CG1 CG2 CD1 REMARK 470 ILE A 308 CG1 CG2 CD1 REMARK 470 LEU A 309 CG CD1 CD2 REMARK 470 MET A 357 CG SD CE REMARK 470 ILE A 360 CG1 CG2 CD1 REMARK 470 PHE A 363 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 ARG A 369 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 371 CG CD1 CD2 REMARK 470 VAL A 372 CG1 CG2 REMARK 470 ASP A 378 CG OD1 OD2 REMARK 470 SER A 382 OG REMARK 470 ARG A 384 CG CD NE CZ NH1 NH2 REMARK 470 THR A 402 OG1 CG2 REMARK 470 VAL A 403 CG1 CG2 REMARK 470 SER A 404 OG REMARK 470 VAL A 405 CG1 CG2 REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 ARG A 425 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 426 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 101 31.48 110.17 REMARK 500 SER A 104 -15.62 118.24 REMARK 500 SER A 105 -137.96 -114.45 REMARK 500 HIS A 110 -70.79 -64.21 REMARK 500 HIS A 111 74.78 -62.21 REMARK 500 ASP A 113 115.55 -178.64 REMARK 500 PRO A 146 98.10 -32.83 REMARK 500 LEU A 150 121.08 -176.79 REMARK 500 ASN A 152 66.39 -168.84 REMARK 500 PHE A 160 88.83 -153.17 REMARK 500 LYS A 176 -70.16 -59.65 REMARK 500 ARG A 197 48.49 -92.30 REMARK 500 LEU A 224 -65.77 -23.27 REMARK 500 ARG A 227 -18.25 105.73 REMARK 500 SER A 240 -169.00 -106.55 REMARK 500 THR A 241 -34.44 -139.78 REMARK 500 LYS A 243 47.38 33.03 REMARK 500 VAL A 255 73.34 -114.64 REMARK 500 SER A 365 -162.74 -78.15 REMARK 500 LYS A 366 49.88 -74.48 REMARK 500 GLN A 381 105.17 -166.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 420 SER A 421 146.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 4TZ7 A 49 431 UNP Q503I3 Q503I3_DANRE 49 431 SEQADV 4TZ7 MET A 46 UNP Q503I3 EXPRESSION TAG SEQADV 4TZ7 ALA A 47 UNP Q503I3 EXPRESSION TAG SEQADV 4TZ7 SER A 48 UNP Q503I3 EXPRESSION TAG SEQADV 4TZ7 LEU A 432 UNP Q503I3 EXPRESSION TAG SEQADV 4TZ7 GLU A 433 UNP Q503I3 EXPRESSION TAG SEQADV 4TZ7 HIS A 434 UNP Q503I3 EXPRESSION TAG SEQADV 4TZ7 HIS A 435 UNP Q503I3 EXPRESSION TAG SEQADV 4TZ7 HIS A 436 UNP Q503I3 EXPRESSION TAG SEQADV 4TZ7 HIS A 437 UNP Q503I3 EXPRESSION TAG SEQADV 4TZ7 HIS A 438 UNP Q503I3 EXPRESSION TAG SEQADV 4TZ7 HIS A 439 UNP Q503I3 EXPRESSION TAG SEQRES 1 A 394 MET ALA SER THR GLY GLU THR THR TYR LYS LYS THR THR SEQRES 2 A 394 SER SER ALA LEU LYS GLY ALA ILE GLN LEU GLY ILE THR SEQRES 3 A 394 HIS SER VAL GLY SER LEU SER GLN LYS PRO GLU ARG ASP SEQRES 4 A 394 VAL LEU MET GLN ASP PHE GLU VAL VAL GLU SER ILE PHE SEQRES 5 A 394 PHE PRO SER GLN GLY SER SER SER THR PRO GLY HIS HIS SEQRES 6 A 394 HIS GLY ASP PHE LYS PHE LYS THR TYR ALA PRO ILE ALA SEQRES 7 A 394 PHE ARG TYR PHE ARG GLU MET PHE GLY ILE ARG PRO ASP SEQRES 8 A 394 ASP TYR LEU TYR SER LEU CYS ASN GLU PRO LEU ILE GLU SEQRES 9 A 394 LEU SER ASN PRO GLY ALA SER GLY SER LEU PHE TYR VAL SEQRES 10 A 394 SER SER ASP ASP GLU PHE ILE ILE LYS THR VAL GLN HIS SEQRES 11 A 394 LYS GLU ALA GLU PHE LEU GLN THR LEU LEU PRO GLY TYR SEQRES 12 A 394 PHE MET ASN LEU ASN GLN ASN MET ARG THR LEU LEU PRO SEQRES 13 A 394 LYS PHE TYR GLY LEU TYR CYS VAL GLN ALA ASP GLY LYS SEQRES 14 A 394 ASN ILE ARG ILE VAL VAL MET ASN ASN LEU LEU PRO ARG SEQRES 15 A 394 ALA VAL PRO MET HIS LEU LYS PHE ASP LEU LYS GLY SER SEQRES 16 A 394 THR TYR LYS ARG ARG ALA SER PRO LYS GLU ARG SER LYS SEQRES 17 A 394 GLY VAL PRO THR TYR LYS ASP LEU ASP PHE MET GLN ASP SEQRES 18 A 394 MET PRO GLU GLY ILE LEU LEU GLU ASN ASP HIS TYR THR SEQRES 19 A 394 ALA LEU SER ARG THR MET GLN ARG ASP CYS ARG VAL LEU SEQRES 20 A 394 GLN SER PHE LYS ILE MET ASP TYR SER LEU LEU VAL GLY SEQRES 21 A 394 ILE HIS ILE LEU HIS ARG ALA GLY GLU GLU ALA SER THR SEQRES 22 A 394 ALA VAL PRO ASP THR GLN LYS LYS GLY GLN GLY GLN LYS SEQRES 23 A 394 PRO LEU TYR CYS THR ALA ILE GLU SER ILE GLN GLY GLU SEQRES 24 A 394 SER LYS SER LYS THR SER PRO GLN PRO TYR GLU SER MET SEQRES 25 A 394 GLY GLY ILE PRO ALA PHE ASN SER LYS GLY GLU ARG LEU SEQRES 26 A 394 LEU VAL PHE ILE GLY ILE ILE ASP ILE LEU GLN SER TYR SEQRES 27 A 394 ARG LEU VAL LYS LYS LEU GLU HIS SER TRP LYS ALA LEU SEQRES 28 A 394 LEU HIS ASP GLY ASP THR VAL SER VAL HIS ARG PRO SER SEQRES 29 A 394 PHE TYR ALA ASP ARG PHE GLN LYS PHE MET CYS SER THR SEQRES 30 A 394 VAL PHE ARG LYS SER GLN LEU LYS THR LEU GLU HIS HIS SEQRES 31 A 394 HIS HIS HIS HIS HELIX 1 AA1 THR A 57 SER A 76 1 20 HELIX 2 AA2 LEU A 86 GLU A 91 5 6 HELIX 3 AA3 ALA A 120 PHE A 131 1 12 HELIX 4 AA4 ARG A 134 ASN A 144 1 11 HELIX 5 AA5 GLN A 174 LEU A 184 1 11 HELIX 6 AA6 LEU A 184 ASN A 193 1 10 HELIX 7 AA7 SER A 247 SER A 252 1 6 HELIX 8 AA8 ASP A 260 MET A 267 1 8 HELIX 9 AA9 GLU A 274 PHE A 295 1 22 HELIX 10 AB1 HIS A 406 VAL A 423 1 18 SHEET 1 AA1 6 VAL A 93 PRO A 99 0 SHEET 2 AA1 6 ASP A 113 TYR A 119 -1 O PHE A 114 N PHE A 98 SHEET 3 AA1 6 PHE A 203 ALA A 211 -1 O CYS A 208 N LYS A 117 SHEET 4 AA1 6 ASN A 215 MET A 221 -1 O ILE A 216 N VAL A 209 SHEET 5 AA1 6 ILE A 169 VAL A 173 -1 N ILE A 169 O MET A 221 SHEET 6 AA1 6 PHE A 160 VAL A 162 -1 N TYR A 161 O ILE A 170 SHEET 1 AA2 4 THR A 257 LYS A 259 0 SHEET 2 AA2 4 LEU A 233 LEU A 237 1 N ASP A 236 O TYR A 258 SHEET 3 AA2 4 SER A 301 ILE A 306 -1 O ILE A 306 N LEU A 233 SHEET 4 AA2 4 PHE A 373 ILE A 377 -1 O PHE A 373 N GLY A 305 SHEET 1 AA3 2 LEU A 272 LEU A 273 0 SHEET 2 AA3 2 PHE A 424 ARG A 425 1 O PHE A 424 N LEU A 273 SHEET 1 AA4 2 ALA A 362 ASN A 364 0 SHEET 2 AA4 2 ARG A 369 LEU A 371 -1 O LEU A 370 N PHE A 363 CRYST1 88.946 88.946 157.074 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006366 0.00000