PDB Short entry for 4UBB
HEADER    TRANSFERASE, LYASE/DNA                  12-AUG-14   4UBB              
TITLE     DNA POLYMERASE BETA REACTANT COMPLEX WITH A TEMPLATING CYTOSINE AND   
TITLE    2 INCOMING 8-OXODGTP, 40 S                                             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3';  
COMPND   3 CHAIN: T;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*(8OG))-3';             
COMPND   7 CHAIN: P;                                                            
COMPND   8 ENGINEERED: YES;                                                     
COMPND   9 MOL_ID: 3;                                                           
COMPND  10 MOLECULE: 5'-D(P*GP*TP*CP*GP*G)-3';                                  
COMPND  11 CHAIN: D;                                                            
COMPND  12 ENGINEERED: YES;                                                     
COMPND  13 MOL_ID: 4;                                                           
COMPND  14 MOLECULE: DNA POLYMERASE BETA;                                       
COMPND  15 CHAIN: A;                                                            
COMPND  16 EC: 2.7.7.7,4.2.99.-;                                                
COMPND  17 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE   4 ORGANISM_TAXID: 32630;                                               
SOURCE   5 MOL_ID: 2;                                                           
SOURCE   6 SYNTHETIC: YES;                                                      
SOURCE   7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE   8 ORGANISM_TAXID: 32630;                                               
SOURCE   9 MOL_ID: 3;                                                           
SOURCE  10 SYNTHETIC: YES;                                                      
SOURCE  11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  12 ORGANISM_TAXID: 32630;                                               
SOURCE  13 MOL_ID: 4;                                                           
SOURCE  14 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  15 ORGANISM_COMMON: HUMAN;                                              
SOURCE  16 ORGANISM_TAXID: 9606;                                                
SOURCE  17 GENE: POLB;                                                          
SOURCE  18 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  19 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE  20 EXPRESSION_SYSTEM_STRAIN: TAP56;                                     
SOURCE  21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  22 EXPRESSION_SYSTEM_PLASMID: PWL11                                     
KEYWDS    DNA POLYMERASE, TRANSFERASE, LYASE-DNA COMPLEX                        
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    B.D.FREUDENTHAL,S.H.WILSON,W.A.BEARD                                  
REVDAT   5   27-SEP-23 4UBB    1       REMARK LINK                              
REVDAT   4   27-NOV-19 4UBB    1       SOURCE JRNL   REMARK                     
REVDAT   3   04-FEB-15 4UBB    1       JRNL                                     
REVDAT   2   03-DEC-14 4UBB    1       JRNL                                     
REVDAT   1   12-NOV-14 4UBB    0                                                
JRNL        AUTH   B.D.FREUDENTHAL,W.A.BEARD,L.PERERA,D.D.SHOCK,T.KIM,          
JRNL        AUTH 2 T.SCHLICK,S.H.WILSON                                         
JRNL        TITL   UNCOVERING THE POLYMERASE-INDUCED CYTOTOXICITY OF AN         
JRNL        TITL 2 OXIDIZED NUCLEOTIDE.                                         
JRNL        REF    NATURE                        V. 517   635 2015              
JRNL        REFN                   ESSN 1476-4687                               
JRNL        PMID   25409153                                                     
JRNL        DOI    10.1038/NATURE13886                                          
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.7_650)                      
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 31.90                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 92.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 60716                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.184                           
REMARK   3   R VALUE            (WORKING SET) : 0.181                           
REMARK   3   FREE R VALUE                     : 0.228                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.010                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 3039                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 31.8995 -  5.3162    0.96     2734   150  0.1686 0.2238        
REMARK   3     2  5.3162 -  4.2227    0.99     2782   145  0.1506 0.1778        
REMARK   3     3  4.2227 -  3.6899    0.95     2707   145  0.1535 0.1851        
REMARK   3     4  3.6899 -  3.3529    0.95     2681   145  0.1782 0.2239        
REMARK   3     5  3.3529 -  3.1128    0.98     2798   146  0.1984 0.2276        
REMARK   3     6  3.1128 -  2.9294    0.98     2758   145  0.2013 0.2606        
REMARK   3     7  2.9294 -  2.7828    0.98     2771   146  0.1929 0.2527        
REMARK   3     8  2.7828 -  2.6617    0.98     2778   146  0.1989 0.2668        
REMARK   3     9  2.6617 -  2.5593    0.97     2761   150  0.1912 0.2341        
REMARK   3    10  2.5593 -  2.4710    0.97     2798   149  0.1924 0.2483        
REMARK   3    11  2.4710 -  2.3938    0.96     2694   136  0.1911 0.2319        
REMARK   3    12  2.3938 -  2.3254    0.95     2685   140  0.1843 0.2382        
REMARK   3    13  2.3254 -  2.2642    0.95     2705   144  0.1802 0.2444        
REMARK   3    14  2.2642 -  2.2089    0.94     2617   138  0.1855 0.2387        
REMARK   3    15  2.2089 -  2.1587    0.94     2710   143  0.1923 0.2698        
REMARK   3    16  2.1587 -  2.1128    0.93     2609   136  0.1905 0.2318        
REMARK   3    17  2.1128 -  2.0705    0.92     2609   141  0.1897 0.2542        
REMARK   3    18  2.0705 -  2.0315    0.90     2517   131  0.1946 0.2338        
REMARK   3    19  2.0315 -  1.9952    0.86     2435   124  0.2053 0.2163        
REMARK   3    20  1.9952 -  1.9614    0.83     2368   120  0.2001 0.2609        
REMARK   3    21  1.9614 -  1.9298    0.77     2186   110  0.2237 0.2648        
REMARK   3    22  1.9298 -  1.9000    0.69     1974   109  0.2351 0.3277        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.10                                          
REMARK   3   SHRINKAGE RADIUS   : 0.83                                          
REMARK   3   K_SOL              : 0.34                                          
REMARK   3   B_SOL              : 33.34                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.250            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.210           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 4.11330                                              
REMARK   3    B22 (A**2) : -3.67440                                             
REMARK   3    B33 (A**2) : -2.22670                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 3.88590                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.005           3564                                  
REMARK   3   ANGLE     :  0.992           4965                                  
REMARK   3   CHIRALITY :  0.059            539                                  
REMARK   3   PLANARITY :  0.003            520                                  
REMARK   3   DIHEDRAL  : 19.314           1410                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4UBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-14.                  
REMARK 100 THE DEPOSITION ID IS D_1000203133.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 01-DEC-13                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : NULL                               
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 22-BM                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0                                
REMARK 200  MONOCHROMATOR                  : ROSENBAUM-ROCK DOUBLE-CRYSTAL      
REMARK 200                                   SI(220)                            
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 225 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : NULL                               
REMARK 200  DATA SCALING SOFTWARE          : NULL                               
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 63744                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.850                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.1                               
REMARK 200  DATA REDUNDANCY                : 3.200                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.05400                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 20.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.88                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 79.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 1.90                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.27500                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.900                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: NULL                                                  
REMARK 200 STARTING MODEL: PDB ENTRY 2FMS                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 45.09                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM IMIDAZOLE, 350 MM SODIUM           
REMARK 280  CHLORIDE, 17% PEG3350, PH 8.0, VAPOR DIFFUSION, SITTING DROP,       
REMARK 280  TEMPERATURE 291K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       39.92450            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19980 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, D, A                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     SER A     2                                                      
REMARK 465     LYS A     3                                                      
REMARK 465     ARG A     4                                                      
REMARK 465     LYS A     5                                                      
REMARK 465     ALA A     6                                                      
REMARK 465     PRO A     7                                                      
REMARK 465     GLN A     8                                                      
REMARK 465     GLU A     9                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A 248    CG   CD   CE   NZ                                   
REMARK 470     VAL A 303    CG1  CG2                                            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DG T   3   O4' -  C1' -  N9  ANGL. DEV. =   2.0 DEGREES          
REMARK 500     DC T   5   C1' -  O4' -  C4' ANGL. DEV. =  -6.1 DEGREES          
REMARK 500     DC T   5   O4' -  C1' -  N1  ANGL. DEV. =   1.9 DEGREES          
REMARK 500     DG T   7   O4' -  C1' -  N9  ANGL. DEV. =   2.7 DEGREES          
REMARK 500     DC T   8   O4' -  C1' -  N1  ANGL. DEV. =   3.0 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    CYS A 178     -140.67   -111.77                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 402  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1  DC P  10   O3'                                                    
REMARK 620 2  DC P  10   O3'  25.6                                              
REMARK 620 3 8OG P  11   OP1  85.0  65.2                                        
REMARK 620 4 HOH P 202   O    90.9  71.6  78.2                                  
REMARK 620 5 ASP A 190   OD2 161.7 145.2 101.8  74.1                            
REMARK 620 6 ASP A 192   OD1  93.3 107.2  87.2 164.4 104.0                      
REMARK 620 7 ASP A 256   OD2  77.5  95.5 160.4  93.3  92.6 102.2                
REMARK 620 8 8DG A 401   O2A  91.5  71.3   6.5  77.7  95.4  87.2 165.7          
REMARK 620 N                    1     2     3     4     5     6     7           
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG P 101  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 8OG P  11   OP2                                                    
REMARK 620 2 HOH P 214   O    84.5                                              
REMARK 620 3 PPV A 404   O12  88.8 157.5                                        
REMARK 620 4 HOH A 588   O    91.2  64.8  94.0                                  
REMARK 620 5 HOH A 708   O    88.2 100.2 101.0 165.0                            
REMARK 620 6 HOH A 717   O   168.4  86.4  97.0  78.4 100.5                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 403  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 8OG P  11   OP1                                                    
REMARK 620 2 ASP A 190   OD1  89.7                                              
REMARK 620 3 ASP A 192   OD2  88.0  95.6                                        
REMARK 620 4 8DG A 401   O3G  89.9  81.0 176.0                                  
REMARK 620 5 8DG A 401   O2B  91.8 171.6  92.8  90.7                            
REMARK 620 6 8DG A 401   O2A   6.5  90.9  94.2  83.8  89.7                      
REMARK 620 7 PPV A 404   O12  59.2 131.1 117.8  63.8  44.3  54.4                
REMARK 620 8 PPV A 404   O32 103.9 164.2  93.0  90.8  12.1 101.7  54.0          
REMARK 620 9 PPV A 404   O11 101.0  91.5 168.5  15.3  80.0  94.6  62.6  78.0    
REMARK 620 N                    1     2     3     4     5     6     7     8     
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA P 102  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HOH P 208   O                                                      
REMARK 620 2 8DG A 401   O1A  79.9                                              
REMARK 620 3 HOH A 588   O    78.3  65.7                                        
REMARK 620 4 HOH A 681   O   132.2  81.8  53.9                                  
REMARK 620 5 HOH A 716   O   113.4  88.4 149.9 109.8                            
REMARK 620 N                    1     2     3     4                             
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG P 101                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CA P 102                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue 8DG A 401                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue PPV A 404                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4UAW   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4UAY   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4UAZ   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4UB1   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4UB2   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4UB3   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4UB4   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4UB5   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4UBC   RELATED DB: PDB                                   
DBREF  4UBB T    1    16  PDB    4UBB     4UBB             1     16             
DBREF  4UBB P    1    11  PDB    4UBB     4UBB             1     11             
DBREF  4UBB D    1     5  PDB    4UBB     4UBB             1      5             
DBREF  4UBB A    1   335  UNP    P06746   DPOLB_HUMAN      1    335             
SEQRES   1 T   16   DC  DC  DG  DA  DC  DC  DG  DC  DG  DC  DA  DT  DC          
SEQRES   2 T   16   DA  DG  DC                                                  
SEQRES   1 P   11   DG  DC  DT  DG  DA  DT  DG  DC  DG  DC 8OG                  
SEQRES   1 D    5   DG  DT  DC  DG  DG                                          
SEQRES   1 A  335  MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY          
SEQRES   2 A  335  GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU          
SEQRES   3 A  335  LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR          
SEQRES   4 A  335  ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS          
SEQRES   5 A  335  ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL          
SEQRES   6 A  335  GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA          
SEQRES   7 A  335  THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP          
SEQRES   8 A  335  ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER          
SEQRES   9 A  335  GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU          
SEQRES  10 A  335  GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP          
SEQRES  11 A  335  LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE          
SEQRES  12 A  335  GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU          
SEQRES  13 A  335  GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL          
SEQRES  14 A  335  ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG          
SEQRES  15 A  335  ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU          
SEQRES  16 A  335  THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO          
SEQRES  17 A  335  LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL          
SEQRES  18 A  335  HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS          
SEQRES  19 A  335  PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU          
SEQRES  20 A  335  LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE          
SEQRES  21 A  335  PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR          
SEQRES  22 A  335  GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA          
SEQRES  23 A  335  LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG          
SEQRES  24 A  335  PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO          
SEQRES  25 A  335  VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP          
SEQRES  26 A  335  LYS TYR ARG GLU PRO LYS ASP ARG SER GLU                      
HET    8OG  P  11      23                                                       
HET     MG  P 101       1                                                       
HET     CA  P 102       1                                                       
HET    8DG  A 401      32                                                       
HET     MG  A 402       1                                                       
HET     MG  A 403       1                                                       
HET    PPV  A 404       9                                                       
HETNAM     8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE                        
HETNAM      MG MAGNESIUM ION                                                    
HETNAM      CA CALCIUM ION                                                      
HETNAM     8DG 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE                          
HETNAM     PPV PYROPHOSPHATE                                                    
HETSYN     8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE            
FORMUL   2  8OG    C10 H14 N5 O8 P                                              
FORMUL   5   MG    3(MG 2+)                                                     
FORMUL   6   CA    CA 2+                                                        
FORMUL   7  8DG    C10 H16 N5 O14 P3                                            
FORMUL  10  PPV    H4 O7 P2                                                     
FORMUL  11  HOH   *267(H2 O)                                                    
HELIX    1 AA1 ASN A   12  VAL A   29  1                                  18    
HELIX    2 AA2 ALA A   32  TYR A   49  1                                  18    
HELIX    3 AA3 SER A   55  LYS A   61  1                                   7    
HELIX    4 AA4 GLY A   66  GLY A   80  1                                  15    
HELIX    5 AA5 LEU A   82  ASP A   91  1                                  10    
HELIX    6 AA6 ASP A   91  THR A  101  1                                  11    
HELIX    7 AA7 GLY A  107  GLU A  117  1                                  11    
HELIX    8 AA8 THR A  121  ASN A  128  1                                   8    
HELIX    9 AA9 GLU A  129  LEU A  132  5                                   4    
HELIX   10 AB1 ASN A  133  TYR A  142  1                                  10    
HELIX   11 AB2 TYR A  142  LYS A  148  1                                   7    
HELIX   12 AB3 ARG A  152  ASP A  170  1                                  19    
HELIX   13 AB4 CYS A  178  ARG A  183  1                                   6    
HELIX   14 AB5 LYS A  209  VAL A  221  1                                  13    
HELIX   15 AB6 PRO A  261  ASP A  263  5                                   3    
HELIX   16 AB7 GLN A  264  GLY A  274  1                                  11    
HELIX   17 AB8 SER A  275  LYS A  289  1                                  15    
HELIX   18 AB9 SER A  315  ILE A  323  1                                   9    
HELIX   19 AC1 GLU A  329  ARG A  333  5                                   5    
SHEET    1 AA1 2 ILE A 150  PRO A 151  0                                        
SHEET    2 AA1 2 SER A 187  SER A 188 -1  O  SER A 188   N  ILE A 150           
SHEET    1 AA2 5 ILE A 174  VAL A 177  0                                        
SHEET    2 AA2 5 MET A 191  THR A 196 -1  O  LEU A 194   N  THR A 176           
SHEET    3 AA2 5 ARG A 253  LEU A 259  1  O  ARG A 258   N  LEU A 195           
SHEET    4 AA2 5 LYS A 234  CYS A 239 -1  N  CYS A 239   O  ARG A 253           
SHEET    5 AA2 5 ILE A 224  LYS A 230 -1  N  LEU A 228   O  MET A 236           
SHEET    1 AA3 2 PHE A 291  ILE A 293  0                                        
SHEET    2 AA3 2 ILE A 298  PRO A 300 -1  O  ARG A 299   N  THR A 292           
LINK         O3'B DC P  10                 P  B8OG P  11     1555   1555  1.60  
LINK         O3'A DC P  10                MG    MG A 402     1555   1555  2.54  
LINK         O3'B DC P  10                MG    MG A 402     1555   1555  2.43  
LINK         OP2B8OG P  11                MG  B MG P 101     1555   1555  2.25  
LINK         OP1B8OG P  11                MG    MG A 402     1555   1555  2.26  
LINK         OP1B8OG P  11                MG    MG A 403     1555   1555  2.35  
LINK        MG  B MG P 101                 O  BHOH P 214     1555   1555  2.14  
LINK        MG  B MG P 101                 O12BPPV A 404     1555   1555  2.29  
LINK        MG  B MG P 101                 O   HOH A 588     1555   1555  2.15  
LINK        MG  B MG P 101                 O   HOH A 708     1555   1555  2.37  
LINK        MG  B MG P 101                 O  BHOH A 717     1555   1555  2.00  
LINK        CA  A CA P 102                 O   HOH P 208     1555   1555  2.42  
LINK        CA  A CA P 102                 O1AA8DG A 401     1555   1555  2.49  
LINK        CA  A CA P 102                 O   HOH A 588     1555   1555  2.45  
LINK        CA  A CA P 102                 O  AHOH A 681     1555   1555  2.39  
LINK        CA  A CA P 102                 O   HOH A 716     1555   1555  2.20  
LINK         O   HOH P 202                MG    MG A 402     1555   1555  2.23  
LINK         OD2 ASP A 190                MG    MG A 402     1555   1555  2.23  
LINK         OD1 ASP A 190                MG    MG A 403     1555   1555  2.17  
LINK         OD1 ASP A 192                MG    MG A 402     1555   1555  2.18  
LINK         OD2 ASP A 192                MG    MG A 403     1555   1555  2.13  
LINK         OD2 ASP A 256                MG    MG A 402     1555   1555  2.15  
LINK         O2AA8DG A 401                MG    MG A 402     1555   1555  2.51  
LINK         O3GA8DG A 401                MG    MG A 403     1555   1555  2.07  
LINK         O2BA8DG A 401                MG    MG A 403     1555   1555  2.26  
LINK         O2AA8DG A 401                MG    MG A 403     1555   1555  2.08  
LINK        MG    MG A 403                 O12BPPV A 404     1555   1555  2.99  
LINK        MG    MG A 403                 O32BPPV A 404     1555   1555  2.25  
LINK        MG    MG A 403                 O11BPPV A 404     1555   1555  2.61  
LINK        MG    MG A 403                 O   HOH A 566     1555   1555  2.12  
CISPEP   1 GLY A  274    SER A  275          0         1.35                     
SITE     1 AC1  9 8DG A 401  PPV A 404  HOH A 588  HOH A 681                    
SITE     2 AC1  9 HOH A 708  HOH A 717  8OG P  11   CA P 102                    
SITE     3 AC1  9 HOH P 214                                                     
SITE     1 AC2  8 8DG A 401  HOH A 588  HOH A 681  HOH A 716                    
SITE     2 AC2  8 HOH A 717  8OG P  11   MG P 101  HOH P 208                    
SITE     1 AC3 32 GLY A 179  SER A 180  ARG A 183  GLY A 189                    
SITE     2 AC3 32 ASP A 190  ASP A 192  TYR A 271  PHE A 272                    
SITE     3 AC3 32 THR A 273  GLY A 274  ASP A 276  ASN A 279                    
SITE     4 AC3 32 ARG A 283   MG A 402   MG A 403  PPV A 404                    
SITE     5 AC3 32 HOH A 566  HOH A 573  HOH A 588  HOH A 667                    
SITE     6 AC3 32 HOH A 681  HOH A 708  HOH A 717   DC P  10                    
SITE     7 AC3 32 8OG P  11   MG P 101   CA P 102  HOH P 202                    
SITE     8 AC3 32 HOH P 203  HOH P 214   DC T   6   DG T   7                    
SITE     1 AC4  8 ASP A 190  ASP A 192  ASP A 256  8DG A 401                    
SITE     2 AC4  8  MG A 403   DC P  10  8OG P  11  HOH P 202                    
SITE     1 AC5  7 ASP A 190  ASP A 192  8DG A 401   MG A 402                    
SITE     2 AC5  7 PPV A 404  HOH A 566  8OG P  11                               
SITE     1 AC6 16 ARG A 149  GLY A 179  SER A 180  ARG A 183                    
SITE     2 AC6 16 SER A 188  GLY A 189  ASP A 190  ASP A 192                    
SITE     3 AC6 16 8DG A 401   MG A 403  HOH A 566  HOH A 573                    
SITE     4 AC6 16 HOH A 708  HOH A 717  8OG P  11   MG P 101                    
CRYST1   50.798   79.849   55.625  90.00 107.58  90.00 P 1 21 1      2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.019686  0.000000  0.006237        0.00000                         
SCALE2      0.000000  0.012524  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.018858        0.00000