PDB Short entry for 4UDS HEADER TRANSCRIPTION 11-DEC-14 4UDS TITLE CRYSTAL STRUCTURE OF MBDR REGULATOR FROM AZOARCUS SP. CIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MBDR REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOARCUS SP. CIB; SOURCE 3 ORGANISM_TAXID: 198107; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, TETR FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR H.LIU,H.X.LIU,S.A.MACMAHON,J.F.JUAREZ,M.T.ZAMARRO,C.EBERLEIN,M.BOLL, AUTHOR 2 M.CARMONA,E.DIAZ,J.H.NAISMITH REVDAT 4 13-SEP-17 4UDS 1 REMARK REVDAT 3 27-MAY-15 4UDS 1 JRNL REVDAT 2 01-APR-15 4UDS 1 JRNL REVDAT 1 24-DEC-14 4UDS 0 JRNL AUTH J.F.JUAREZ,H.LIU,M.T.ZAMARRO,S.MCMAHON,H.LIU,J.H.NAISMITH, JRNL AUTH 2 C.EBERLEIN,M.BOLL,M.CARMONA,E.DIAZ JRNL TITL UNRAVELING THE SPECIFIC REGULATION OF THE MBD CENTRAL JRNL TITL 2 PATHWAY FOR THE ANAEROBIC DEGRADATION OF 3-METHYLBENZOATE. JRNL REF J.BIOL.CHEM. V. 290 12165 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25795774 JRNL DOI 10.1074/JBC.M115.637074 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0111 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 17349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 938 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 899 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.834 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1517 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1020 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2052 ; 1.818 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2496 ; 1.079 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 194 ; 5.213 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;33.971 ;23.906 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;14.376 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 240 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1678 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 303 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8790 9.7500 6.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.0197 T22: 0.0508 REMARK 3 T33: 0.0242 T12: -0.0071 REMARK 3 T13: 0.0063 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 4.9931 L22: 3.5015 REMARK 3 L33: 3.0616 L12: 3.8891 REMARK 3 L13: -0.7373 L23: 0.0446 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: 0.1457 S13: 0.0808 REMARK 3 S21: 0.0021 S22: 0.1497 S23: 0.0161 REMARK 3 S31: -0.0494 S32: -0.0660 S33: -0.1763 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2330 9.9470 1.5060 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.1842 REMARK 3 T33: 0.0688 T12: -0.1157 REMARK 3 T13: 0.0150 T23: -0.0862 REMARK 3 L TENSOR REMARK 3 L11: 0.1730 L22: 1.0537 REMARK 3 L33: 5.8902 L12: 0.4085 REMARK 3 L13: -0.9195 L23: -1.9013 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.0006 S13: -0.0097 REMARK 3 S21: -0.1074 S22: 0.1295 S23: -0.0601 REMARK 3 S31: -0.2688 S32: 0.4309 S33: -0.1437 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7540 7.0380 26.5320 REMARK 3 T TENSOR REMARK 3 T11: 0.0253 T22: 0.0649 REMARK 3 T33: 0.0468 T12: -0.0159 REMARK 3 T13: 0.0042 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.3616 L22: 0.4605 REMARK 3 L33: 10.3852 L12: 0.2533 REMARK 3 L13: 1.8510 L23: 1.1427 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: 0.0094 S13: -0.0071 REMARK 3 S21: -0.0077 S22: -0.0112 S23: -0.1079 REMARK 3 S31: -0.0526 S32: 0.0297 S33: 0.0441 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5740 8.6800 34.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: 0.0343 REMARK 3 T33: 0.0426 T12: -0.0059 REMARK 3 T13: 0.0048 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.9913 L22: 5.4187 REMARK 3 L33: 15.2907 L12: -1.2644 REMARK 3 L13: 3.7270 L23: -6.9567 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.0072 S13: -0.0378 REMARK 3 S21: 0.0761 S22: 0.1269 S23: 0.0307 REMARK 3 S31: -0.0139 S32: -0.0939 S33: -0.1397 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2470 3.1380 17.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.0348 T22: 0.0822 REMARK 3 T33: 0.0371 T12: -0.0144 REMARK 3 T13: 0.0192 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.3535 L22: 4.1074 REMARK 3 L33: 1.4228 L12: 0.4754 REMARK 3 L13: 0.7066 L23: 2.0984 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0559 S13: -0.0243 REMARK 3 S21: -0.1299 S22: 0.0982 S23: -0.0856 REMARK 3 S31: -0.0669 S32: -0.0446 S33: -0.0916 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9100 -5.0790 12.7420 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.0392 REMARK 3 T33: 0.0581 T12: 0.0550 REMARK 3 T13: 0.0579 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 9.5594 L22: 0.8101 REMARK 3 L33: 16.6594 L12: -2.7207 REMARK 3 L13: 6.3446 L23: -2.4700 REMARK 3 S TENSOR REMARK 3 S11: 0.2823 S12: 0.3458 S13: -0.0648 REMARK 3 S21: -0.1109 S22: -0.1245 S23: 0.0216 REMARK 3 S31: 0.6061 S32: 0.5282 S33: -0.1578 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1810 -3.4830 35.5320 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.0786 REMARK 3 T33: 0.1060 T12: 0.0035 REMARK 3 T13: -0.0243 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 0.9686 L22: 0.9732 REMARK 3 L33: 6.0824 L12: 0.1266 REMARK 3 L13: -1.4074 L23: -2.1356 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: -0.0160 S13: 0.0135 REMARK 3 S21: 0.0134 S22: 0.0473 S23: -0.0301 REMARK 3 S31: 0.0137 S32: -0.0199 S33: -0.0243 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3650 -7.3670 36.8480 REMARK 3 T TENSOR REMARK 3 T11: 0.0170 T22: 0.1279 REMARK 3 T33: 0.1019 T12: 0.0134 REMARK 3 T13: -0.0124 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.6723 L22: 1.0697 REMARK 3 L33: 9.9483 L12: -1.1981 REMARK 3 L13: 3.1214 L23: -3.2188 REMARK 3 S TENSOR REMARK 3 S11: 0.1918 S12: 0.0157 S13: -0.3544 REMARK 3 S21: -0.0630 S22: 0.0295 S23: 0.1166 REMARK 3 S31: 0.1605 S32: 0.0230 S33: -0.2213 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8610 7.3230 24.0030 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: 0.0567 REMARK 3 T33: 0.0246 T12: -0.0055 REMARK 3 T13: 0.0022 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.7946 L22: 3.3171 REMARK 3 L33: 1.8176 L12: -0.4948 REMARK 3 L13: -0.0792 L23: -1.3748 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: -0.0130 S13: 0.0439 REMARK 3 S21: -0.0190 S22: -0.0574 S23: -0.0900 REMARK 3 S31: -0.0917 S32: -0.0788 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8330 9.3700 35.8080 REMARK 3 T TENSOR REMARK 3 T11: 0.0380 T22: 0.0380 REMARK 3 T33: 0.0702 T12: 0.0102 REMARK 3 T13: 0.0036 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.1273 L22: 4.4375 REMARK 3 L33: 3.7667 L12: -0.6767 REMARK 3 L13: 0.4131 L23: -3.5995 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.0062 S13: 0.0622 REMARK 3 S21: 0.1443 S22: -0.0684 S23: -0.2375 REMARK 3 S31: -0.1764 S32: 0.0291 S33: 0.0837 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4UDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1290062542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17349 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 52.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.51500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.10500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.91000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.51500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.10500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.91000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.51500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.10500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.91000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.51500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 28.10500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2158 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 ASN A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 465 ARG A 13 REMARK 465 LYS A 14 REMARK 465 THR A 48 REMARK 465 LYS A 49 REMARK 465 ASP A 207 REMARK 465 ARG A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 CYS A 211 REMARK 465 LYS A 212 REMARK 465 ASN A 213 REMARK 465 PRO A 214 REMARK 465 THR A 215 REMARK 465 PHE A 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2113 O HOH A 2114 1.84 REMARK 500 OH TYR A 33 OD1 ASP A 60 1.86 REMARK 500 OG SER A 122 O HOH A 2120 1.95 REMARK 500 OE1 GLU A 164 O HOH A 2169 1.99 REMARK 500 O HOH A 2203 O HOH A 2205 2.01 REMARK 500 O HOH A 2116 O HOH A 2118 2.04 REMARK 500 O HOH A 2054 O HOH A 2055 2.08 REMARK 500 O HOH A 2035 O HOH A 2080 2.08 REMARK 500 O HOH A 2116 O HOH A 2119 2.10 REMARK 500 O HOH A 2130 O HOH A 2131 2.11 REMARK 500 CG MSE A 82 O HOH A 2068 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2055 O HOH A 2055 4555 1.16 REMARK 500 O HOH A 2086 O HOH A 2087 2655 1.76 REMARK 500 NZ LYS A 95 OE2 GLU A 164 7555 1.77 REMARK 500 O HOH A 2086 O HOH A 2086 2655 1.78 REMARK 500 O HOH A 2166 O HOH A 2196 2555 1.87 REMARK 500 OD1 ASP A 79 O HOH A 2086 2655 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 64 C MSE A 65 N -0.187 REMARK 500 TYR A 81 C MSE A 82 N -0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 60 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 174 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 183 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 183 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 183 59.64 -143.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 60 13.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A2098 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A2201 DISTANCE = 9.18 ANGSTROMS REMARK 525 HOH A2202 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A2203 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH A2204 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH A2206 DISTANCE = 9.81 ANGSTROMS REMARK 525 HOH A2207 DISTANCE = 8.87 ANGSTROMS REMARK 525 HOH A2208 DISTANCE = 9.75 ANGSTROMS DBREF 4UDS A 3 216 PDB 4UDS 4UDS 3 216 SEQRES 1 A 214 MSE ARG LYS LEU ASN LYS LYS GLU GLU GLN ARG LYS ALA SEQRES 2 A 214 SER THR GLU ASN ILE LEU GLY CYS ALA LEU ASP LEU PHE SEQRES 3 A 214 VAL LYS ASN GLY TYR ARG ALA THR THR ILE ASP MSE ILE SEQRES 4 A 214 ALA ALA ARG ALA GLY LEU THR LYS GLY ALA ILE TYR PHE SEQRES 5 A 214 TYR PHE LYS THR LYS ASP ALA ILE MSE LEU MSE LEU LEU SEQRES 6 A 214 GLU GLU ALA GLU LYS TYR ILE VAL ASP PRO ILE ASP GLU SEQRES 7 A 214 TYR MSE ALA ASN ALA GLY PRO LEU ALA ASP ALA LYS LEU SEQRES 8 A 214 VAL LYS PHE ILE ASN MSE GLN ALA LEU LEU GLY VAL THR SEQRES 9 A 214 LYS PRO GLN HIS VAL LEU LEU LEU ILE LEU VAL SER ILE SEQRES 10 A 214 ASP PHE SER GLY THR GLY ASP ASP ILE GLU LYS ARG ALA SEQRES 11 A 214 LYS ALA ILE TYR ARG ARG MSE TYR GLY HIS VAL GLU GLN SEQRES 12 A 214 LEU ILE ALA GLN GLY GLN THR GLU GLY VAL PHE ARG SER SEQRES 13 A 214 ASP SER GLY SER ASP GLU LEU ALA SER ILE VAL MSE ALA SEQRES 14 A 214 ALA HIS ASP GLY VAL LEU ILE GLU TRP TYR ARG ARG PRO SEQRES 15 A 214 ASN GLU LEU THR GLY LYS THR LEU THR LYS ALA LEU ARG SEQRES 16 A 214 SER VAL LEU LEU ASN GLY LEU ILE VAL ASP ARG GLY SER SEQRES 17 A 214 CYS LYS ASN PRO THR PHE MODRES 4UDS MSE A 40 MET SELENOMETHIONINE MODRES 4UDS MSE A 63 MET SELENOMETHIONINE MODRES 4UDS MSE A 65 MET SELENOMETHIONINE MODRES 4UDS MSE A 82 MET SELENOMETHIONINE MODRES 4UDS MSE A 99 MET SELENOMETHIONINE MODRES 4UDS MSE A 139 MET SELENOMETHIONINE MODRES 4UDS MSE A 170 MET SELENOMETHIONINE HET MSE A 40 8 HET MSE A 63 8 HET MSE A 65 8 HET MSE A 82 8 HET MSE A 99 8 HET MSE A 139 8 HET MSE A 170 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 HOH *208(H2 O) HELIX 1 1 ALA A 15 GLY A 32 1 18 HELIX 2 2 THR A 37 GLY A 46 1 10 HELIX 3 3 ALA A 51 TYR A 55 5 5 HELIX 4 4 THR A 58 VAL A 75 1 18 HELIX 5 5 PRO A 77 ALA A 85 1 9 HELIX 6 6 LEU A 88 LYS A 107 1 20 HELIX 7 7 LYS A 107 VAL A 117 1 11 HELIX 8 8 ILE A 119 GLY A 123 5 5 HELIX 9 9 GLY A 125 GLU A 153 1 29 HELIX 10 10 GLY A 161 ARG A 183 1 23 HELIX 11 11 LEU A 192 GLY A 203 1 12 LINK C ASP A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N ILE A 41 1555 1555 1.32 LINK C ILE A 62 N MSE A 63 1555 1555 1.37 LINK C MSE A 63 N LEU A 64 1555 1555 1.22 LINK C LEU A 64 N MSE A 65 1555 1555 1.15 LINK C MSE A 65 N LEU A 66 1555 1555 1.29 LINK C TYR A 81 N MSE A 82 1555 1555 1.16 LINK C MSE A 82 N ALA A 83 1555 1555 1.29 LINK C ASN A 98 N MSE A 99 1555 1555 1.32 LINK C MSE A 99 N GLN A 100 1555 1555 1.32 LINK C ARG A 138 N MSE A 139 1555 1555 1.31 LINK C MSE A 139 N TYR A 140 1555 1555 1.31 LINK C VAL A 169 N MSE A 170 1555 1555 1.32 LINK C MSE A 170 N ALA A 171 1555 1555 1.32 CISPEP 1 GLY A 86 PRO A 87 0 -1.24 CRYST1 47.030 56.210 143.820 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006953 0.00000