PDB Short entry for 4UI0 HEADER SIGNALING PROTEIN 27-MAR-15 4UI0 TITLE CRYSTAL STRUCTURE OF THE HUMAN RGMB-BMP2 COMPLEX, CRYSTAL TITLE 2 FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RGM DOMAIN FAMILY MEMBER B; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 53-136; COMPND 5 SYNONYM: DRG11-RESPONSIVE AXONAL GUIDANCE AND OUTGROWTH OF NEURITE, COMPND 6 DRAGON, REPULSIVE GUIDANCE MOLECULE B, RGMB; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BONE MORPHOGENETIC PROTEIN 2; COMPND 10 CHAIN: A, B; COMPND 11 FRAGMENT: C-TERMINAL DOMAIN SIGNALING DOMAIN, RESIDUES 283-396; COMPND 12 SYNONYM: BMP-2, BONE MORPHOGENETIC PROTEIN 2A, BMP-2A, BMP2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS SIGNALING PROTEIN, REPULSIVE GUIDANCE MOLECULE, BONE MORPHOGENETIC KEYWDS 2 PROTEIN PATHWAY, HEMOJUVELIN, MORPHOGEN, AXON GUIDANCE, CELL KEYWDS 3 SURFACE RECEPTOR SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR E.G.HEALEY,B.BISHOP,J.ELEGHEERT,C.H.BELL,S.PADILLA-PARRA,C.SIEBOLD REVDAT 3 17-JUN-15 4UI0 1 JRNL REVDAT 2 20-MAY-15 4UI0 1 JRNL REVDAT 1 06-MAY-15 4UI0 0 JRNL AUTH E.G.HEALEY,B.BISHOP,J.ELEGHEERT,C.H.BELL,S.PADILLA-PARRA, JRNL AUTH 2 C.SIEBOLD JRNL TITL REPULSIVE GUIDANCE MOLECULE IS A STRUCTURAL BRIDGE BETWEEN JRNL TITL 2 NEOGENIN AND BONE MORPHOGENETIC PROTEIN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 458 2015 JRNL REFN ISSN 1545-9993 JRNL PMID 25938661 JRNL DOI 10.1038/NSMB.3016 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,WOMACK; REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.85 REMARK 3 NUMBER OF REFLECTIONS : 12284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.2344 REMARK 3 R VALUE (WORKING SET) : 0.2327 REMARK 3 FREE R VALUE : 0.2665 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.79 REMARK 3 FREE R VALUE TEST SET COUNT : 588 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2884 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3482 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2742 REMARK 3 BIN R VALUE (WORKING SET) : 0.3448 REMARK 3 BIN FREE R VALUE : 0.4208 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.92 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 142 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2018 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.7622 REMARK 3 B22 (A**2) : -12.7622 REMARK 3 B33 (A**2) : 25.5243 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.546 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.473 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.303 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.462 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.304 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.8968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.9102 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2094 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 2854 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 939 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 49 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 301 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2094 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 269 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2371 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.11 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.05 REMARK 3 REMARK 3 TLS DETAILS. REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|293 - A|396 } REMARK 3 ORIGIN FOR THE GROUP (A): 35.9843 -34.3494 23.2569 REMARK 3 T TENSOR REMARK 3 T11: -0.0066 T22: -0.0095 REMARK 3 T33: -0.2125 T12: 0.1363 REMARK 3 T13: 0.0108 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 2.6205 L22: 1.1108 REMARK 3 L33: 4.5005 L12: 1.7185 REMARK 3 L13: -2.3156 L23: -1.1795 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: 0.0142 S13: 0.1531 REMARK 3 S21: -0.0499 S22: 0.0495 S23: 0.1648 REMARK 3 S31: -0.2026 S32: -0.1697 S33: -0.0764 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|293 - B|396 } REMARK 3 ORIGIN FOR THE GROUP (A): 45.6479 -26.5357 9.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: -0.1312 REMARK 3 T33: -0.2962 T12: 0.1186 REMARK 3 T13: -0.0202 T23: -0.0676 REMARK 3 L TENSOR REMARK 3 L11: 3.7149 L22: 2.9764 REMARK 3 L33: 5.5895 L12: 2.1684 REMARK 3 L13: -3.6760 L23: -3.4394 REMARK 3 S TENSOR REMARK 3 S11: -0.2133 S12: -0.0076 S13: 0.1702 REMARK 3 S21: -0.1548 S22: 0.1403 S23: 0.1379 REMARK 3 S31: -0.1878 S32: -0.2206 S33: 0.0729 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|53 - C|121 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.6028 -54.3969 12.3319 REMARK 3 T TENSOR REMARK 3 T11: 0.3187 T22: 0.0481 REMARK 3 T33: -0.3581 T12: 0.0384 REMARK 3 T13: 0.1913 T23: -0.1309 REMARK 3 L TENSOR REMARK 3 L11: 1.4332 L22: 5.0517 REMARK 3 L33: 4.1167 L12: -0.1409 REMARK 3 L13: -2.0010 L23: 4.9068 REMARK 3 S TENSOR REMARK 3 S11: -0.0873 S12: 0.3845 S13: -0.0091 REMARK 3 S21: -0.3054 S22: 0.1865 S23: 0.1450 REMARK 3 S31: 0.2127 S32: -0.0811 S33: -0.0992 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4UI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-15. REMARK 100 THE PDBE ID CODE IS EBI-63466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91730 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13647 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.80 REMARK 200 RESOLUTION RANGE LOW (A) : 45.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.6 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 9.0 REMARK 200 R MERGE FOR SHELL (I) : 0.59 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.3 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M CITRIC ACID PH 4.0, 15% (V/V) REMARK 280 MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.78800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.39400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.39400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.78800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 283 REMARK 465 ALA A 284 REMARK 465 LYS A 285 REMARK 465 HIS A 286 REMARK 465 LYS A 287 REMARK 465 GLN A 288 REMARK 465 ARG A 289 REMARK 465 LYS A 290 REMARK 465 ARG A 291 REMARK 465 LEU A 292 REMARK 465 LEU A 333 REMARK 465 ALA A 334 REMARK 465 ASP A 335 REMARK 465 GLN B 283 REMARK 465 ALA B 284 REMARK 465 LYS B 285 REMARK 465 HIS B 286 REMARK 465 LYS B 287 REMARK 465 GLN B 288 REMARK 465 ARG B 289 REMARK 465 LYS B 290 REMARK 465 ARG B 291 REMARK 465 LEU B 292 REMARK 465 GLU C 50 REMARK 465 THR C 51 REMARK 465 GLY C 52 REMARK 465 HIS C 69 REMARK 465 LEU C 70 REMARK 465 ASN C 71 REMARK 465 SER C 72 REMARK 465 ALA C 73 REMARK 465 VAL C 74 REMARK 465 ASP C 75 REMARK 465 GLY C 76 REMARK 465 PHE C 77 REMARK 465 ASP C 78 REMARK 465 SER C 79 REMARK 465 GLU C 80 REMARK 465 PHE C 81 REMARK 465 SER C 122 REMARK 465 LYS C 123 REMARK 465 ASP C 124 REMARK 465 GLY C 125 REMARK 465 PRO C 126 REMARK 465 THR C 127 REMARK 465 SER C 128 REMARK 465 SER C 129 REMARK 465 THR C 130 REMARK 465 ASN C 131 REMARK 465 PRO C 132 REMARK 465 GLU C 133 REMARK 465 VAL C 134 REMARK 465 THR C 135 REMARK 465 HIS C 136 REMARK 465 GLY C 137 REMARK 465 THR C 138 REMARK 465 LYS C 139 REMARK 465 HIS C 140 REMARK 465 HIS C 141 REMARK 465 HIS C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 HIS A 336 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 293 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 313 -30.66 -137.93 REMARK 500 PHE A 323 175.81 70.52 REMARK 500 TRP B 313 -30.99 -136.98 REMARK 500 PHE B 323 173.90 70.31 REMARK 500 CYS B 329 78.99 -107.25 REMARK 500 ASP B 335 -53.22 -28.44 REMARK 500 HIS B 336 104.88 -174.78 REMARK 500 LEU B 337 -134.29 42.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A1398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A1397 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UHY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RGMA-BMP2 COMPLEX REMARK 900 RELATED ID: 4UHZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RGMB-BMP2 COMPLEX, REMARK 900 CRYSTAL FORM 1 REMARK 900 RELATED ID: 4UI1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RGMC-BMP2 COMPLEX REMARK 900 RELATED ID: 4UI2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY RGMB-BMP2-NEO1 REMARK 900 COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL DOMAIN OF HUMAN RGMB WITH 3 ADDITIONAL N- REMARK 999 TERMINAL RESIDUES (ETG) AND 9 ADDITIONAL C-TERMINAL REMARK 999 RESIDUES (GTKHHHHHH). DBREF 4UI0 A 283 396 UNP P12643 BMP2_HUMAN 283 396 DBREF 4UI0 B 283 396 UNP P12643 BMP2_HUMAN 283 396 DBREF 4UI0 C 53 136 UNP Q6NW40 RGMB_HUMAN 53 136 SEQADV 4UI0 GLU C 50 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 THR C 51 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 GLY C 52 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 GLY C 137 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 THR C 138 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 LYS C 139 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 HIS C 140 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 HIS C 141 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 HIS C 142 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 HIS C 143 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 HIS C 144 UNP Q6NW40 EXPRESSION TAG SEQADV 4UI0 HIS C 145 UNP Q6NW40 EXPRESSION TAG SEQRES 1 C 96 GLU THR GLY GLN CYS ARG ILE GLN LYS CYS THR THR ASP SEQRES 2 C 96 PHE VAL SER LEU THR SER HIS LEU ASN SER ALA VAL ASP SEQRES 3 C 96 GLY PHE ASP SER GLU PHE CYS LYS ALA LEU ARG ALA TYR SEQRES 4 C 96 ALA GLY CYS THR GLN ARG THR SER LYS ALA CYS ARG GLY SEQRES 5 C 96 ASN LEU VAL TYR HIS SER ALA VAL LEU GLY ILE SER ASP SEQRES 6 C 96 LEU MET SER GLN ARG ASN CYS SER LYS ASP GLY PRO THR SEQRES 7 C 96 SER SER THR ASN PRO GLU VAL THR HIS GLY THR LYS HIS SEQRES 8 C 96 HIS HIS HIS HIS HIS SEQRES 1 A 114 GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SER SEQRES 2 A 114 CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER ASP VAL SEQRES 3 A 114 GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY TYR HIS SEQRES 4 A 114 ALA PHE TYR CYS HIS GLY GLU CYS PRO PHE PRO LEU ALA SEQRES 5 A 114 ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL GLN THR SEQRES 6 A 114 LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS ALA CYS SEQRES 7 A 114 CYS VAL PRO THR GLU LEU SER ALA ILE SER MET LEU TYR SEQRES 8 A 114 LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN TYR GLN SEQRES 9 A 114 ASP MET VAL VAL GLU GLY CYS GLY CYS ARG SEQRES 1 B 114 GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SER SEQRES 2 B 114 CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER ASP VAL SEQRES 3 B 114 GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY TYR HIS SEQRES 4 B 114 ALA PHE TYR CYS HIS GLY GLU CYS PRO PHE PRO LEU ALA SEQRES 5 B 114 ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL GLN THR SEQRES 6 B 114 LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS ALA CYS SEQRES 7 B 114 CYS VAL PRO THR GLU LEU SER ALA ILE SER MET LEU TYR SEQRES 8 B 114 LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN TYR GLN SEQRES 9 B 114 ASP MET VAL VAL GLU GLY CYS GLY CYS ARG HET FLC A1398 13 HET MPD A1397 8 HET CL B1397 1 HETNAM FLC CITRATE ANION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CL CHLORIDE ION FORMUL 4 FLC C6 H5 O7 3- FORMUL 5 MPD C6 H14 O2 FORMUL 6 CL CL 1- FORMUL 7 HOH *20(H2 O) HELIX 1 1 GLY A 309 TRP A 313 5 5 HELIX 2 2 THR A 340 SER A 351 1 12 HELIX 3 3 GLY B 309 TRP B 313 5 5 HELIX 4 4 PRO B 330 ASP B 335 1 6 HELIX 5 5 THR B 340 SER B 351 1 12 HELIX 6 6 ARG C 55 SER C 68 1 14 HELIX 7 7 LYS C 83 SER C 96 1 14 HELIX 8 8 ASN C 102 GLN C 118 1 17 SHEET 1 AA 2 LYS A 297 HIS A 299 0 SHEET 2 AA 2 TYR A 324 HIS A 326 -1 O TYR A 324 N HIS A 299 SHEET 1 AB 2 TYR A 302 ASP A 304 0 SHEET 2 AB 2 GLY A 319 HIS A 321 -1 O TYR A 320 N VAL A 303 SHEET 1 AC 2 CYS A 361 LEU A 374 0 SHEET 2 AC 2 VAL A 380 CYS A 395 -1 O VAL A 381 N TYR A 373 SHEET 1 BA 2 LYS B 297 HIS B 299 0 SHEET 2 BA 2 TYR B 324 HIS B 326 -1 O TYR B 324 N HIS B 299 SHEET 1 BB 2 TYR B 302 ASP B 304 0 SHEET 2 BB 2 GLY B 319 HIS B 321 -1 O TYR B 320 N VAL B 303 SHEET 1 BC 2 CYS B 361 LEU B 374 0 SHEET 2 BC 2 VAL B 380 CYS B 395 -1 O VAL B 381 N TYR B 373 SSBOND 1 CYS A 296 CYS A 361 1555 1555 2.04 SSBOND 2 CYS A 325 CYS A 393 1555 1555 2.04 SSBOND 3 CYS A 329 CYS A 395 1555 1555 2.03 SSBOND 4 CYS A 360 CYS B 360 1555 1555 2.02 SSBOND 5 CYS B 296 CYS B 361 1555 1555 2.04 SSBOND 6 CYS B 325 CYS B 393 1555 1555 2.01 SSBOND 7 CYS B 329 CYS B 395 1555 1555 2.04 SSBOND 8 CYS C 54 CYS C 99 1555 1555 2.04 SSBOND 9 CYS C 59 CYS C 91 1555 1555 2.04 SSBOND 10 CYS C 82 CYS C 121 1555 1555 2.03 CISPEP 1 ALA A 316 PRO A 317 0 -6.27 CISPEP 2 ALA B 316 PRO B 317 0 -4.76 CISPEP 3 HIS B 336 LEU B 337 0 3.01 CISPEP 4 GLN C 118 ARG C 119 0 0.45 SITE 1 AC1 6 HOH A2010 HOH A2012 GLY B 319 TYR B 320 SITE 2 AC1 6 HIS B 321 HOH B2003 SITE 1 AC2 3 SER A 370 LEU A 372 SER B 370 CRYST1 85.021 85.021 115.182 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011762 0.006791 0.000000 0.00000 SCALE2 0.000000 0.013581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008682 0.00000 MTRIX1 1 0.446600 -0.432100 0.783500 -3.30600 1 MTRIX2 1 -0.429700 -0.871600 -0.235800 -34.94000 1 MTRIX3 1 0.784800 -0.231400 -0.575000 -13.23000 1