PDB Short entry for 4UI1 HEADER SIGNALING PROTEIN 27-MAR-15 4UI1 TITLE CRYSTAL STRUCTURE OF THE HUMAN RGMC-BMP2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOJUVELIN; COMPND 3 CHAIN: C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 35-145; COMPND 5 SYNONYM: HEMOCHROMATOSIS TYPE 2 PROTEIN, RGM DOMAIN FAMILY MEMBER COMPND 6 C, REPULSIVE GUIDANCE MOLECULE C, RGMC; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BONE MORPHOGENETIC PROTEIN 2; COMPND 10 CHAIN: A, B; COMPND 11 FRAGMENT: C-TERMINAL DOMAIN SIGNALING DOMAIN, RESIDUES 283-396; COMPND 12 SYNONYM: BMP-2, BONE MORPHOGENETIC PROTEIN 2A, BMP-2A, BMP2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS SIGNALING PROTEIN, BONE MORPHOGENETIC PROTEIN PATHWAY, HEMOJUVELIN, KEYWDS 2 MORPHOGEN, AXON GUIDANCE, CELL SURFACE RECEPTOR SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR E.G.HEALEY,B.BISHOP,J.ELEGHEERT,C.H.BELL,S.PADILLA-PARRA,C.SIEBOLD REVDAT 3 17-JUN-15 4UI1 1 JRNL REVDAT 2 20-MAY-15 4UI1 1 JRNL REVDAT 1 06-MAY-15 4UI1 0 JRNL AUTH E.G.HEALEY,B.BISHOP,J.ELEGHEERT,C.H.BELL,S.PADILLA-PARRA, JRNL AUTH 2 C.SIEBOLD JRNL TITL REPULSIVE GUIDANCE MOLECULE IS A STRUCTURAL BRIDGE BETWEEN JRNL TITL 2 NEOGENIN AND BONE MORPHOGENETIC PROTEIN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 458 2015 JRNL REFN ISSN 1545-9993 JRNL PMID 25938661 JRNL DOI 10.1038/NSMB.3016 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.64 REMARK 3 NUMBER OF REFLECTIONS : 18135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.1890 REMARK 3 R VALUE (WORKING SET) : 0.1865 REMARK 3 FREE R VALUE : 0.2380 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.06 REMARK 3 FREE R VALUE TEST SET COUNT : 918 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.64 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2626 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2099 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2495 REMARK 3 BIN R VALUE (WORKING SET) : 0.2081 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.8881 REMARK 3 B22 (A**2) : -22.3994 REMARK 3 B33 (A**2) : 12.5113 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.318 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.300 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.224 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.286 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.222 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.9191 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.8894 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2833 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 3841 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 1278 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 60 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 416 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2833 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 363 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3312 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.12 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.03 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|293 - A|396 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.5971 9.0951 9.0283 REMARK 3 T TENSOR REMARK 3 T11: -0.1024 T22: 0.0695 REMARK 3 T33: -0.1261 T12: -0.0490 REMARK 3 T13: -0.0226 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.2074 L22: 0.9329 REMARK 3 L33: 4.6859 L12: 1.1481 REMARK 3 L13: 1.7670 L23: 1.9215 REMARK 3 S TENSOR REMARK 3 S11: 0.1402 S12: -0.1420 S13: 0.1318 REMARK 3 S21: 0.0460 S22: -0.2112 S23: 0.1017 REMARK 3 S31: -0.0362 S32: -0.4829 S33: 0.0710 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|292 - B|396 } REMARK 3 ORIGIN FOR THE GROUP (A): 38.1823 13.2596 15.8404 REMARK 3 T TENSOR REMARK 3 T11: -0.0895 T22: 0.0457 REMARK 3 T33: -0.1419 T12: -0.0892 REMARK 3 T13: 0.0023 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.7510 L22: 0.2382 REMARK 3 L33: 5.1330 L12: 0.4207 REMARK 3 L13: 3.0103 L23: 1.1314 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: 0.1765 S13: 0.0067 REMARK 3 S21: -0.0778 S22: 0.0609 S23: 0.0342 REMARK 3 S31: -0.1431 S32: 0.2942 S33: -0.1011 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|35 - C|128 } REMARK 3 ORIGIN FOR THE GROUP (A): 28.5795 13.5410 -14.4657 REMARK 3 T TENSOR REMARK 3 T11: -0.1321 T22: 0.1546 REMARK 3 T33: -0.2018 T12: -0.0179 REMARK 3 T13: -0.0508 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 2.1187 L22: 4.1146 REMARK 3 L33: 6.5259 L12: -0.4167 REMARK 3 L13: -0.0187 L23: -1.9999 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.3135 S13: 0.0272 REMARK 3 S21: -0.2545 S22: -0.3459 S23: -0.3797 REMARK 3 S31: -0.3375 S32: 0.2928 S33: 0.4005 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|36 - D|129 } REMARK 3 ORIGIN FOR THE GROUP (A): 29.8350 19.0460 39.5613 REMARK 3 T TENSOR REMARK 3 T11: -0.1935 T22: 0.3186 REMARK 3 T33: -0.2711 T12: -0.1403 REMARK 3 T13: 0.0279 T23: -0.0978 REMARK 3 L TENSOR REMARK 3 L11: 3.9228 L22: 4.1083 REMARK 3 L33: 3.7733 L12: -1.4456 REMARK 3 L13: -0.6780 L23: 1.0672 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: -0.7736 S13: 0.0069 REMARK 3 S21: 0.2763 S22: -0.1990 S23: 0.0484 REMARK 3 S31: 0.1434 S32: -0.3387 S33: 0.0860 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-15. REMARK 100 THE PDBE ID CODE IS EBI-63468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18558 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.35 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.7 REMARK 200 R MERGE (I) : 0.14 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.1 REMARK 200 R MERGE FOR SHELL (I) : 0.79 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG3350, 0.2 M AMMONIUM REMARK 280 NITRATE, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.52000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.85000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.14500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.85000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.52000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.14500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 283 REMARK 465 ALA A 284 REMARK 465 LYS A 285 REMARK 465 HIS A 286 REMARK 465 LYS A 287 REMARK 465 GLN A 288 REMARK 465 ARG A 289 REMARK 465 LYS A 290 REMARK 465 ARG A 291 REMARK 465 LEU A 292 REMARK 465 GLN B 283 REMARK 465 ALA B 284 REMARK 465 LYS B 285 REMARK 465 HIS B 286 REMARK 465 LYS B 287 REMARK 465 GLN B 288 REMARK 465 ARG B 289 REMARK 465 LYS B 290 REMARK 465 ARG B 291 REMARK 465 GLU C 33 REMARK 465 THR C 34 REMARK 465 GLY C 55 REMARK 465 GLY C 56 REMARK 465 GLY C 57 REMARK 465 SER C 58 REMARK 465 SER C 59 REMARK 465 GLY C 60 REMARK 465 ALA C 61 REMARK 465 LEU C 62 REMARK 465 ARG C 63 REMARK 465 GLY C 64 REMARK 465 GLY C 65 REMARK 465 GLY C 66 REMARK 465 GLY C 67 REMARK 465 GLY C 68 REMARK 465 GLY C 69 REMARK 465 ARG C 70 REMARK 465 GLY C 71 REMARK 465 GLY C 72 REMARK 465 GLY C 73 REMARK 465 VAL C 74 REMARK 465 GLY C 75 REMARK 465 SER C 76 REMARK 465 PRO C 129 REMARK 465 PRO C 130 REMARK 465 ARG C 131 REMARK 465 GLY C 132 REMARK 465 PRO C 133 REMARK 465 ALA C 134 REMARK 465 LEU C 135 REMARK 465 PRO C 136 REMARK 465 GLY C 137 REMARK 465 ALA C 138 REMARK 465 GLY C 139 REMARK 465 SER C 140 REMARK 465 GLY C 141 REMARK 465 LEU C 142 REMARK 465 PRO C 143 REMARK 465 ALA C 144 REMARK 465 PRO C 145 REMARK 465 GLY C 146 REMARK 465 THR C 147 REMARK 465 LYS C 148 REMARK 465 HIS C 149 REMARK 465 HIS C 150 REMARK 465 HIS C 151 REMARK 465 HIS C 152 REMARK 465 HIS C 153 REMARK 465 HIS C 154 REMARK 465 GLU D 33 REMARK 465 THR D 34 REMARK 465 SER D 35 REMARK 465 ARG D 54 REMARK 465 GLY D 55 REMARK 465 GLY D 56 REMARK 465 GLY D 57 REMARK 465 SER D 58 REMARK 465 SER D 59 REMARK 465 GLY D 60 REMARK 465 ALA D 61 REMARK 465 LEU D 62 REMARK 465 ARG D 63 REMARK 465 GLY D 64 REMARK 465 GLY D 65 REMARK 465 GLY D 66 REMARK 465 GLY D 67 REMARK 465 GLY D 68 REMARK 465 GLY D 69 REMARK 465 ARG D 70 REMARK 465 GLY D 71 REMARK 465 GLY D 72 REMARK 465 GLY D 73 REMARK 465 VAL D 74 REMARK 465 GLY D 75 REMARK 465 PRO D 130 REMARK 465 ARG D 131 REMARK 465 GLY D 132 REMARK 465 PRO D 133 REMARK 465 ALA D 134 REMARK 465 LEU D 135 REMARK 465 PRO D 136 REMARK 465 GLY D 137 REMARK 465 ALA D 138 REMARK 465 GLY D 139 REMARK 465 SER D 140 REMARK 465 GLY D 141 REMARK 465 LEU D 142 REMARK 465 PRO D 143 REMARK 465 ALA D 144 REMARK 465 PRO D 145 REMARK 465 GLY D 146 REMARK 465 THR D 147 REMARK 465 LYS D 148 REMARK 465 HIS D 149 REMARK 465 HIS D 150 REMARK 465 HIS D 151 REMARK 465 HIS D 152 REMARK 465 HIS D 153 REMARK 465 HIS D 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 335 C - N - CA ANGL. DEV. = 21.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 323 173.38 65.75 REMARK 500 CYS A 329 72.08 -118.18 REMARK 500 ALA A 334 23.89 -72.74 REMARK 500 ASP A 375 -162.86 -100.69 REMARK 500 PHE B 323 172.77 66.26 REMARK 500 CYS B 329 71.33 -119.50 REMARK 500 ALA B 334 98.20 -54.12 REMARK 500 ASP B 335 -47.57 94.99 REMARK 500 ASN B 338 57.56 28.56 REMARK 500 THR C 125 121.37 174.54 REMARK 500 ALA C 126 128.18 -29.96 REMARK 500 ASN D 118 68.42 36.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B1397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B1398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 D1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A1397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B1399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D1131 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UHY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RGMA-BMP2 COMPLEX REMARK 900 RELATED ID: 4UHZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RGMB-BMP2 COMPLEX, REMARK 900 CRYSTAL FORM 1 REMARK 900 RELATED ID: 4UI0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RGMB-BMP2 COMPLEX, REMARK 900 CRYSTAL FORM 2 REMARK 900 RELATED ID: 4UI2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY RGMB-BMP2-NEO1 REMARK 900 COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL DOMAIN OF HUMAN RGMC WITH 3 ADDITIONAL N- REMARK 999 TERMINAL RESIDUES (ETG) AND 9 ADDITIONAL C-TERMINAL REMARK 999 RESIDUES (GTKHHHHHH). DBREF 4UI1 A 283 396 UNP P12643 BMP2_HUMAN 283 396 DBREF 4UI1 B 283 396 UNP P12643 BMP2_HUMAN 283 396 DBREF 4UI1 C 35 145 UNP Q6ZVN8 RGMC_HUMAN 35 145 DBREF 4UI1 D 35 145 UNP Q6ZVN8 RGMC_HUMAN 35 145 SEQADV 4UI1 GLU C 33 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 THR C 34 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 GLY C 146 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 THR C 147 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 LYS C 148 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS C 149 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS C 150 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS C 151 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS C 152 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS C 153 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS C 154 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 GLU D 33 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 THR D 34 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 GLY D 146 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 THR D 147 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 LYS D 148 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS D 149 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS D 150 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS D 151 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS D 152 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS D 153 UNP Q6ZVN8 EXPRESSION TAG SEQADV 4UI1 HIS D 154 UNP Q6ZVN8 EXPRESSION TAG SEQRES 1 C 122 GLU THR SER GLN CYS LYS ILE LEU ARG CYS ASN ALA GLU SEQRES 2 C 122 TYR VAL SER SER THR LEU SER LEU ARG GLY GLY GLY SER SEQRES 3 C 122 SER GLY ALA LEU ARG GLY GLY GLY GLY GLY GLY ARG GLY SEQRES 4 C 122 GLY GLY VAL GLY SER GLY GLY LEU CYS ARG ALA LEU ARG SEQRES 5 C 122 SER TYR ALA LEU CYS THR ARG ARG THR ALA ARG THR CYS SEQRES 6 C 122 ARG GLY ASP LEU ALA PHE HIS SER ALA VAL HIS GLY ILE SEQRES 7 C 122 GLU ASP LEU MET ILE GLN HIS ASN CYS SER ARG GLN GLY SEQRES 8 C 122 PRO THR ALA PRO PRO PRO PRO ARG GLY PRO ALA LEU PRO SEQRES 9 C 122 GLY ALA GLY SER GLY LEU PRO ALA PRO GLY THR LYS HIS SEQRES 10 C 122 HIS HIS HIS HIS HIS SEQRES 1 D 122 GLU THR SER GLN CYS LYS ILE LEU ARG CYS ASN ALA GLU SEQRES 2 D 122 TYR VAL SER SER THR LEU SER LEU ARG GLY GLY GLY SER SEQRES 3 D 122 SER GLY ALA LEU ARG GLY GLY GLY GLY GLY GLY ARG GLY SEQRES 4 D 122 GLY GLY VAL GLY SER GLY GLY LEU CYS ARG ALA LEU ARG SEQRES 5 D 122 SER TYR ALA LEU CYS THR ARG ARG THR ALA ARG THR CYS SEQRES 6 D 122 ARG GLY ASP LEU ALA PHE HIS SER ALA VAL HIS GLY ILE SEQRES 7 D 122 GLU ASP LEU MET ILE GLN HIS ASN CYS SER ARG GLN GLY SEQRES 8 D 122 PRO THR ALA PRO PRO PRO PRO ARG GLY PRO ALA LEU PRO SEQRES 9 D 122 GLY ALA GLY SER GLY LEU PRO ALA PRO GLY THR LYS HIS SEQRES 10 D 122 HIS HIS HIS HIS HIS SEQRES 1 A 114 GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SER SEQRES 2 A 114 CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER ASP VAL SEQRES 3 A 114 GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY TYR HIS SEQRES 4 A 114 ALA PHE TYR CYS HIS GLY GLU CYS PRO PHE PRO LEU ALA SEQRES 5 A 114 ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL GLN THR SEQRES 6 A 114 LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS ALA CYS SEQRES 7 A 114 CYS VAL PRO THR GLU LEU SER ALA ILE SER MET LEU TYR SEQRES 8 A 114 LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN TYR GLN SEQRES 9 A 114 ASP MET VAL VAL GLU GLY CYS GLY CYS ARG SEQRES 1 B 114 GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SER SEQRES 2 B 114 CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER ASP VAL SEQRES 3 B 114 GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY TYR HIS SEQRES 4 B 114 ALA PHE TYR CYS HIS GLY GLU CYS PRO PHE PRO LEU ALA SEQRES 5 B 114 ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL GLN THR SEQRES 6 B 114 LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS ALA CYS SEQRES 7 B 114 CYS VAL PRO THR GLU LEU SER ALA ILE SER MET LEU TYR SEQRES 8 B 114 LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN TYR GLN SEQRES 9 B 114 ASP MET VAL VAL GLU GLY CYS GLY CYS ARG HET NO3 B1397 4 HET NO3 B1398 4 HET NO3 D1130 4 HET NO3 A1397 4 HET NO3 B1399 4 HET NO3 B1400 4 HET CL A1398 1 HET CL A1399 1 HET EDO B1401 4 HET EDO C1129 4 HET EDO D1131 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM NO3 NITRATE ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 3(C2 H6 O2) FORMUL 6 NO3 6(N O3 1-) FORMUL 7 CL 2(CL 1-) FORMUL 8 HOH *85(H2 O) HELIX 1 1 THR A 340 ASN A 353 1 14 HELIX 2 2 GLU A 376 GLU A 378 5 3 HELIX 3 3 GLY B 309 ASP B 312 5 4 HELIX 4 4 THR B 340 ASN B 353 1 14 HELIX 5 5 LYS C 38 SER C 52 1 15 HELIX 6 6 GLY C 77 ALA C 94 1 18 HELIX 7 7 ARG C 95 CYS C 97 5 3 HELIX 8 8 ASP C 100 HIS C 117 1 18 HELIX 9 9 LYS D 38 SER D 52 1 15 HELIX 10 10 SER D 76 ALA D 94 1 19 HELIX 11 11 ARG D 95 CYS D 97 5 3 HELIX 12 12 ASP D 100 GLN D 116 1 17 HELIX 13 13 HIS D 117 CYS D 119 5 3 SHEET 1 AA 2 LYS A 297 HIS A 299 0 SHEET 2 AA 2 TYR A 324 HIS A 326 -1 O TYR A 324 N HIS A 299 SHEET 1 AB 2 TYR A 302 ASP A 304 0 SHEET 2 AB 2 GLY A 319 HIS A 321 -1 O TYR A 320 N VAL A 303 SHEET 1 AC 3 ILE A 314 ALA A 316 0 SHEET 2 AC 3 CYS A 361 LEU A 374 -1 O LEU A 372 N VAL A 315 SHEET 3 AC 3 VAL A 380 CYS A 395 -1 O VAL A 381 N TYR A 373 SHEET 1 BA 2 LYS B 297 HIS B 299 0 SHEET 2 BA 2 TYR B 324 HIS B 326 -1 O TYR B 324 N HIS B 299 SHEET 1 BB 2 TYR B 302 ASP B 304 0 SHEET 2 BB 2 GLY B 319 HIS B 321 -1 O TYR B 320 N VAL B 303 SHEET 1 BC 3 ILE B 314 ALA B 316 0 SHEET 2 BC 3 CYS B 361 LEU B 374 -1 O LEU B 372 N VAL B 315 SHEET 3 BC 3 VAL B 380 CYS B 395 -1 O VAL B 381 N TYR B 373 SSBOND 1 CYS A 296 CYS A 361 1555 1555 2.02 SSBOND 2 CYS A 325 CYS A 393 1555 1555 2.03 SSBOND 3 CYS A 329 CYS A 395 1555 1555 2.04 SSBOND 4 CYS A 360 CYS B 360 1555 1555 2.02 SSBOND 5 CYS B 296 CYS B 361 1555 1555 2.03 SSBOND 6 CYS B 325 CYS B 393 1555 1555 2.01 SSBOND 7 CYS B 329 CYS B 395 1555 1555 2.03 SSBOND 8 CYS C 37 CYS C 97 1555 1555 2.03 SSBOND 9 CYS C 42 CYS C 89 1555 1555 2.04 SSBOND 10 CYS C 80 CYS C 119 1555 1555 2.04 SSBOND 11 CYS D 37 CYS D 97 1555 1555 2.02 SSBOND 12 CYS D 42 CYS D 89 1555 1555 2.05 SSBOND 13 CYS D 80 CYS D 119 1555 1555 2.03 CISPEP 1 ALA A 316 PRO A 317 0 0.25 CISPEP 2 PHE A 331 PRO A 332 0 -1.21 CISPEP 3 ALA B 316 PRO B 317 0 1.12 CISPEP 4 PHE B 331 PRO B 332 0 -1.76 CISPEP 5 ALA C 126 PRO C 127 0 6.14 CISPEP 6 PRO C 127 PRO C 128 0 2.84 SITE 1 AC1 7 PHE B 331 PRO B 332 LEU B 333 ALA B 334 SITE 2 AC1 7 ILE B 344 HOH B2029 SER C 105 SITE 1 AC2 4 GLU B 328 CYS B 329 ALA B 359 HOH B2014 SITE 1 AC3 5 ASP B 375 GLU B 376 GLU B 378 LEU D 53 SITE 2 AC3 5 ARG D 98 SITE 1 AC4 3 THR A 340 ASN A 341 ASP B 387 SITE 1 AC5 6 ASN A 341 LYS B 383 TYR B 385 HOH B2030 SITE 2 AC5 6 ASP D 100 LEU D 101 SITE 1 AC6 7 CYS A 325 CYS A 361 HOH A2012 GLN B 346 SITE 2 AC6 7 LYS B 358 CYS B 360 ARG B 396 SITE 1 AC7 2 PRO A 332 LEU A 333 SITE 1 AC8 2 LYS A 383 LEU C 101 SITE 1 AC9 6 GLN A 346 ARG A 396 TYR B 324 CYS B 325 SITE 2 AC9 6 CYS B 361 PRO B 363 SITE 1 BC1 3 CYS C 80 ARG C 84 SER C 120 SITE 1 BC2 3 ALA A 316 SER A 370 ARG D 41 CRYST1 69.040 76.290 81.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014484 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012240 0.00000 MTRIX1 1 -0.921700 -0.386800 0.029560 61.40000 1 MTRIX2 1 -0.386800 0.910600 -0.145700 14.35000 1 MTRIX3 1 0.029450 -0.145800 -0.988900 25.65000 1 MTRIX1 2 -0.931800 -0.357900 0.061090 60.56000 1 MTRIX2 2 -0.363100 0.916900 -0.166000 14.24000 1 MTRIX3 2 0.003403 -0.176900 -0.984200 26.83000 1