PDB Short entry for 4UML HEADER SIGNALING PROTEIN 19-MAY-14 4UML TITLE CRYSTAL STRUCTURE OF GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED TITLE 2 PROTEIN 2 (GDAP2) MACRO DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GANGLIOSIDE-INDUCED DIFFERENTIATION-ASSOCIATED PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MACRO DOMAIN, RESIDUES 1-228; COMPND 5 SYNONYM: GDAP2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFB-LIC-BSE KEYWDS SIGNALING PROTEIN, MACROD3 EXPDTA X-RAY DIFFRACTION AUTHOR J.M.ELKINS,J.WANG,J.KOPEC,D.WANG,C.STRAIN-DAMERELL,L.SHRESTHA,C.SIEG, AUTHOR 2 C.TALLANT,J.A.NEWMAN,F.VON DELFT,C.BOUNTRA,A.EDWARDS,S.KNAPP REVDAT 2 10-JAN-24 4UML 1 REMARK REVDAT 1 28-MAY-14 4UML 0 JRNL AUTH J.M.ELKINS,J.WANG,S.KNAPP JRNL TITL STRUCTURE OF GDAP2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 993 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1399 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1557 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : -2.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1595 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1515 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2163 ; 1.465 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3486 ; 0.815 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 201 ; 6.192 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;32.751 ;24.328 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;14.243 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;25.753 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 249 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1791 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 355 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 804 ; 2.569 ; 3.514 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 803 ; 2.567 ; 3.512 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1002 ; 3.800 ; 5.241 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 791 ; 3.051 ; 3.893 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20255 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 26.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 1.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4IQY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 10% ETHYLENE GLYCOL, 0.2 REMARK 280 M SODIUM/POTASSIUM TARTRATE, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.77450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.42000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.16175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.42000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.38725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.42000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.42000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.16175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.42000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.42000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.38725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.77450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 CYS A 23 REMARK 465 GLN A 24 REMARK 465 ASP A 25 REMARK 465 GLU A 26 REMARK 465 LEU A 27 REMARK 465 ASN A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 ASP A 31 REMARK 465 THR A 32 REMARK 465 THR A 33 REMARK 465 ALA A 34 REMARK 465 GLU A 35 REMARK 465 ILE A 36 REMARK 465 PHE A 37 REMARK 465 GLN A 38 REMARK 465 GLU A 39 REMARK 465 ASP A 40 REMARK 465 THR A 41 REMARK 465 VAL A 42 REMARK 465 LYS A 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 22 OG REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 82 CD CE NZ REMARK 470 LYS A 98 CD CE NZ REMARK 470 LYS A 103 NZ REMARK 470 LYS A 105 NZ REMARK 470 ARG A 108 CZ NH1 NH2 REMARK 470 LYS A 116 NZ REMARK 470 ARG A 138 CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 SER A 226 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2034 O HOH A 2078 2.10 REMARK 500 NE ARG A 138 O HOH A 2074 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 48 128.97 -39.50 REMARK 500 ASN A 67 31.93 -90.27 REMARK 500 PHE A 118 -115.38 56.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2030 DISTANCE = 5.90 ANGSTROMS DBREF 4UML A 1 228 UNP Q9NXN4 GDAP2_HUMAN 1 228 SEQADV 4UML SER A 0 UNP Q9NXN4 EXPRESSION TAG SEQRES 1 A 229 SER MET ASP PRO LEU GLY ALA PRO SER GLN PHE VAL ASP SEQRES 2 A 229 VAL ASP THR LEU PRO SER TRP GLY ASP SER CYS GLN ASP SEQRES 3 A 229 GLU LEU ASN SER SER ASP THR THR ALA GLU ILE PHE GLN SEQRES 4 A 229 GLU ASP THR VAL ARG SER PRO PHE LEU TYR ASN LYS ASP SEQRES 5 A 229 VAL ASN GLY LYS VAL VAL LEU TRP LYS GLY ASP VAL ALA SEQRES 6 A 229 LEU LEU ASN CYS THR ALA ILE VAL ASN THR SER ASN GLU SEQRES 7 A 229 SER LEU THR ASP LYS ASN PRO VAL SER GLU SER ILE PHE SEQRES 8 A 229 MET LEU ALA GLY PRO ASP LEU LYS GLU ASP LEU GLN LYS SEQRES 9 A 229 LEU LYS GLY CYS ARG THR GLY GLU ALA LYS LEU THR LYS SEQRES 10 A 229 GLY PHE ASN LEU ALA ALA ARG PHE ILE ILE HIS THR VAL SEQRES 11 A 229 GLY PRO LYS TYR LYS SER ARG TYR ARG THR ALA ALA GLU SEQRES 12 A 229 SER SER LEU TYR SER CYS TYR ARG ASN VAL LEU GLN LEU SEQRES 13 A 229 ALA LYS GLU GLN SER MET SER SER VAL GLY PHE CYS VAL SEQRES 14 A 229 ILE ASN SER ALA LYS ARG GLY TYR PRO LEU GLU ASP ALA SEQRES 15 A 229 THR HIS ILE ALA LEU ARG THR VAL ARG ARG PHE LEU GLU SEQRES 16 A 229 ILE HIS GLY GLU THR ILE GLU LYS VAL VAL PHE ALA VAL SEQRES 17 A 229 SER ASP LEU GLU GLU GLY THR TYR GLN LYS LEU LEU PRO SEQRES 18 A 229 LEU TYR PHE PRO ARG SER LEU LYS FORMUL 2 HOH *114(H2 O) HELIX 1 1 ASP A 12 LEU A 16 5 5 HELIX 2 2 ASN A 49 GLY A 54 1 6 HELIX 3 3 ASP A 62 LEU A 65 5 4 HELIX 4 4 ASN A 83 GLY A 94 1 12 HELIX 5 5 ASP A 96 LYS A 105 1 10 HELIX 6 6 LYS A 134 ARG A 136 5 3 HELIX 7 7 TYR A 137 GLN A 159 1 23 HELIX 8 8 SER A 171 GLY A 175 5 5 HELIX 9 9 PRO A 177 GLY A 197 1 21 HELIX 10 10 GLU A 198 ILE A 200 5 3 HELIX 11 11 SER A 208 PHE A 223 1 16 SHEET 1 AA 6 VAL A 56 LYS A 60 0 SHEET 2 AA 6 LYS A 202 VAL A 207 1 O VAL A 203 N VAL A 57 SHEET 3 AA 6 SER A 163 PHE A 166 1 O VAL A 164 N VAL A 204 SHEET 4 AA 6 ALA A 70 THR A 74 1 O ALA A 70 N GLY A 165 SHEET 5 AA 6 PHE A 124 THR A 128 1 O PHE A 124 N ILE A 71 SHEET 6 AA 6 ALA A 112 LYS A 116 -1 O LYS A 113 N HIS A 127 CRYST1 70.840 70.840 97.549 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010251 0.00000