PDB Short entry for 4URT HEADER PROTEIN BINDING 02-JUL-14 4URT TITLE THE CRYSTAL STRUCTURE OF A FRAGMENT OF NETRIN-1 IN COMPLEX WITH FN5- TITLE 2 FN6 OF DCC COMPND MOL_ID: 1; COMPND 2 MOLECULE: NETRIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: VI AND V DOMAINS, RESIDUES 39-453; COMPND 5 SYNONYM: EPIDIDYMIS TISSUE PROTEIN LI 131P; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NETRIN RECEPTOR DCC; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: FN5-FN6, RESIDUES 844-1043; COMPND 10 SYNONYM: COLORECTAL CANCER SUPPRESSOR, IMMUNOGLOBULIN SUPERFAMILY DCC COMPND 11 SUBCLASS MEMBER 1, TUMOR SUPPRESSOR PROTEIN DCC, DELETED IN COMPND 12 COLORECTAL CANCER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS PROTEIN BINDING, APOPTOSIS, AXON GUIDANCE, DEPENDENCE RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR L.I.FINCI,N.KRUEGER,X.SUN,J.ZHANG,M.CHEGKAZI,Y.WU,G.SCHENK, AUTHOR 2 H.D.T.MERTENS,D.I.SVERGUN,Y.ZHANG,J.-H.WANG,R.MEIJERS REVDAT 6 10-JAN-24 4URT 1 HETSYN REVDAT 5 29-JUL-20 4URT 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 07-MAR-18 4URT 1 REMARK REVDAT 3 02-DEC-15 4URT 1 CONECT REVDAT 2 17-DEC-14 4URT 1 REMARK VERSN REVDAT 1 10-SEP-14 4URT 0 JRNL AUTH L.I.FINCI,N.KRUEGER,X.SUN,J.ZHANG,M.CHEGKAZI,Y.WU,G.SCHENK, JRNL AUTH 2 H.D.T.MERTENS,D.I.SVERGUN,Y.ZHANG,J.-H.WANG,R.MEIJERS JRNL TITL THE CRYSTAL STRUCTURE OF NETRIN-1 IN COMPLEX WITH DCC JRNL TITL 2 REVEALS THE BI-FUNCTIONALITY OF NETRIN-1 AS A GUIDANCE CUE JRNL REF NEURON V. 83 839 2014 JRNL REFN ISSN 0896-6273 JRNL PMID 25123307 JRNL DOI 10.1016/J.NEURON.2014.07.010 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 77.6828 - 6.1991 1.00 2726 124 0.2337 0.2367 REMARK 3 2 6.1991 - 4.9206 1.00 2582 147 0.2203 0.2779 REMARK 3 3 4.9206 - 4.2987 1.00 2559 138 0.1990 0.2410 REMARK 3 4 4.2987 - 3.9057 1.00 2552 128 0.2140 0.2785 REMARK 3 5 3.9057 - 3.6257 1.00 2506 154 0.2374 0.2517 REMARK 3 6 3.6257 - 3.4120 1.00 2523 136 0.2523 0.2996 REMARK 3 7 3.4120 - 3.2411 0.99 2446 141 0.2611 0.3006 REMARK 3 8 3.2411 - 3.1000 0.95 2397 127 0.2937 0.3364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 5267 REMARK 3 ANGLE : 0.863 7124 REMARK 3 CHIRALITY : 0.121 767 REMARK 3 PLANARITY : 0.003 915 REMARK 3 DIHEDRAL : 11.026 1918 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4URT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1290060862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI 1 1 1 REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20291 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4AQT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 0.15M AMMONIUM REMARK 280 SULFATE AND 15% (W/V) PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.32500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.65850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.65850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.32500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -225.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 43.70500 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 -77.65850 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 116 C1 NAG D 1 1.86 REMARK 500 O PRO A 450 N ILE A 452 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 227 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 -159.64 -77.74 REMARK 500 VAL A 66 -169.00 -119.51 REMARK 500 PRO A 74 109.90 -55.26 REMARK 500 GLU A 86 -137.99 60.07 REMARK 500 LYS A 101 41.87 -99.32 REMARK 500 LEU A 111 109.47 -58.18 REMARK 500 ASN A 124 -62.38 -141.88 REMARK 500 TYR A 125 55.78 -99.43 REMARK 500 GLN A 127 -81.29 -91.55 REMARK 500 SER A 178 146.51 -170.37 REMARK 500 THR A 194 -165.90 -114.76 REMARK 500 SER A 252 -98.59 -91.27 REMARK 500 ASP A 264 74.26 -61.22 REMARK 500 ASP A 297 -153.76 -84.50 REMARK 500 ASP A 300 18.62 59.87 REMARK 500 ARG A 307 -168.77 -126.67 REMARK 500 LYS A 363 -53.27 -132.16 REMARK 500 ARG A 372 -168.12 -77.30 REMARK 500 LYS A 384 -179.35 -69.19 REMARK 500 LYS A 399 44.32 -103.83 REMARK 500 CYS A 451 -31.30 47.97 REMARK 500 LEU A 455 97.47 -61.22 REMARK 500 LEU B 855 -60.65 -106.81 REMARK 500 ASP B 858 -7.65 -151.13 REMARK 500 THR B 875 -55.12 -154.20 REMARK 500 PHE B 889 75.01 54.66 REMARK 500 SER B 892 -92.07 -121.33 REMARK 500 ALA B 893 71.35 62.38 REMARK 500 LYS B 894 29.03 -74.92 REMARK 500 TYR B 895 176.07 58.10 REMARK 500 LYS B 896 83.84 -164.43 REMARK 500 ARG B 926 61.97 -105.02 REMARK 500 ARG B 961 -5.73 61.41 REMARK 500 ASP B 994 49.76 -84.52 REMARK 500 TRP B 995 -157.01 -95.07 REMARK 500 ASN B1026 -159.95 -137.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG D 1 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1465 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 107 O REMARK 620 2 ASP A 110 OD1 74.8 REMARK 620 3 ASN A 112 OD1 150.2 133.3 REMARK 620 4 THR A 118 OG1 106.8 74.3 92.8 REMARK 620 5 THR A 118 O 68.8 112.2 101.3 65.0 REMARK 620 6 SER A 277 O 70.2 137.5 80.2 138.7 76.5 REMARK 620 N 1 2 3 4 5 DBREF 4URT A 39 453 UNP O95631 NET1_HUMAN 39 453 DBREF 4URT B 844 1043 UNP P43146 DCC_HUMAN 844 1043 SEQADV 4URT GLU A 454 UNP O95631 EXPRESSION TAG SEQADV 4URT LEU A 455 UNP O95631 EXPRESSION TAG SEQADV 4URT HIS A 456 UNP O95631 EXPRESSION TAG SEQADV 4URT HIS A 457 UNP O95631 EXPRESSION TAG SEQADV 4URT HIS A 458 UNP O95631 EXPRESSION TAG SEQADV 4URT LEU B 1045 UNP P43146 EXPRESSION TAG SEQADV 4URT GLU B 1046 UNP P43146 EXPRESSION TAG SEQADV 4URT VAL B 1047 UNP P43146 EXPRESSION TAG SEQADV 4URT LEU B 1048 UNP P43146 EXPRESSION TAG SEQADV 4URT PHE B 1049 UNP P43146 EXPRESSION TAG SEQADV 4URT ALA B 1050 UNP P43146 EXPRESSION TAG SEQRES 1 A 420 ASP PRO CYS SER ASP GLU ASN GLY HIS PRO ARG ARG CYS SEQRES 2 A 420 ILE PRO ASP PHE VAL ASN ALA ALA PHE GLY LYS ASP VAL SEQRES 3 A 420 ARG VAL SER SER THR CYS GLY ARG PRO PRO ALA ARG TYR SEQRES 4 A 420 CYS VAL VAL SER GLU ARG GLY GLU GLU ARG LEU ARG SER SEQRES 5 A 420 CYS HIS LEU CYS ASN ALA SER ASP PRO LYS LYS ALA HIS SEQRES 6 A 420 PRO PRO ALA PHE LEU THR ASP LEU ASN ASN PRO HIS ASN SEQRES 7 A 420 LEU THR CYS TRP GLN SER GLU ASN TYR LEU GLN PHE PRO SEQRES 8 A 420 HIS ASN VAL THR LEU THR LEU SER LEU GLY LYS LYS PHE SEQRES 9 A 420 GLU VAL THR TYR VAL SER LEU GLN PHE CYS SER PRO ARG SEQRES 10 A 420 PRO GLU SER MET ALA ILE TYR LYS SER MET ASP TYR GLY SEQRES 11 A 420 ARG THR TRP VAL PRO PHE GLN PHE TYR SER THR GLN CYS SEQRES 12 A 420 ARG LYS MET TYR ASN ARG PRO HIS ARG ALA PRO ILE THR SEQRES 13 A 420 LYS GLN ASN GLU GLN GLU ALA VAL CYS THR ASP SER HIS SEQRES 14 A 420 THR ASP MET ARG PRO LEU SER GLY GLY LEU ILE ALA PHE SEQRES 15 A 420 SER THR LEU ASP GLY ARG PRO SER ALA HIS ASP PHE ASP SEQRES 16 A 420 ASN SER PRO VAL LEU GLN ASP TRP VAL THR ALA THR ASP SEQRES 17 A 420 ILE ARG VAL ALA PHE SER ARG LEU HIS THR PHE GLY ASP SEQRES 18 A 420 GLU ASN GLU ASP ASP SER GLU LEU ALA ARG ASP SER TYR SEQRES 19 A 420 PHE TYR ALA VAL SER ASP LEU GLN VAL GLY GLY ARG CYS SEQRES 20 A 420 LYS CYS ASN GLY HIS ALA ALA ARG CYS VAL ARG ASP ARG SEQRES 21 A 420 ASP ASP SER LEU VAL CYS ASP CYS ARG HIS ASN THR ALA SEQRES 22 A 420 GLY PRO GLU CYS ASP ARG CYS LYS PRO PHE HIS TYR ASP SEQRES 23 A 420 ARG PRO TRP GLN ARG ALA THR ALA ARG GLU ALA ASN GLU SEQRES 24 A 420 CYS VAL ALA CYS ASN CYS ASN LEU HIS ALA ARG ARG CYS SEQRES 25 A 420 ARG PHE ASN MET GLU LEU TYR LYS LEU SER GLY ARG LYS SEQRES 26 A 420 SER GLY GLY VAL CYS LEU ASN CYS ARG HIS ASN THR ALA SEQRES 27 A 420 GLY ARG HIS CYS HIS TYR CYS LYS GLU GLY TYR TYR ARG SEQRES 28 A 420 ASP MET GLY LYS PRO ILE THR HIS ARG LYS ALA CYS LYS SEQRES 29 A 420 ALA CYS ASP CYS HIS PRO VAL GLY ALA ALA GLY LYS THR SEQRES 30 A 420 CYS ASN GLN THR THR GLY GLN CYS PRO CYS LYS ASP GLY SEQRES 31 A 420 VAL THR GLY ILE THR CYS ASN ARG CYS ALA LYS GLY TYR SEQRES 32 A 420 GLN GLN SER ARG SER PRO ILE ALA PRO CYS ILE LYS GLU SEQRES 33 A 420 LEU HIS HIS HIS SEQRES 1 B 206 MET LEU PRO PRO VAL GLY VAL GLN ALA VAL ALA LEU THR SEQRES 2 B 206 HIS ASP ALA VAL ARG VAL SER TRP ALA ASP ASN SER VAL SEQRES 3 B 206 PRO LYS ASN GLN LYS THR SER GLU VAL ARG LEU TYR THR SEQRES 4 B 206 VAL ARG TRP ARG THR SER PHE SER ALA SER ALA LYS TYR SEQRES 5 B 206 LYS SER GLU ASP THR THR SER LEU SER TYR THR ALA THR SEQRES 6 B 206 GLY LEU LYS PRO ASN THR MET TYR GLU PHE SER VAL MET SEQRES 7 B 206 VAL THR LYS ASN ARG ARG SER SER THR TRP SER MET THR SEQRES 8 B 206 ALA HIS ALA THR THR TYR GLU ALA ALA PRO THR SER ALA SEQRES 9 B 206 PRO LYS ASP LEU THR VAL ILE THR ARG GLU GLY LYS PRO SEQRES 10 B 206 ARG ALA VAL ILE VAL SER TRP GLN PRO PRO LEU GLU ALA SEQRES 11 B 206 ASN GLY LYS ILE THR ALA TYR ILE LEU PHE TYR THR LEU SEQRES 12 B 206 ASP LYS ASN ILE PRO ILE ASP ASP TRP ILE MET GLU THR SEQRES 13 B 206 ILE SER GLY ASP ARG LEU THR HIS GLN ILE MET ASP LEU SEQRES 14 B 206 ASN LEU ASP THR MET TYR TYR PHE ARG ILE GLN ALA ARG SEQRES 15 B 206 ASN SER LYS GLY VAL GLY PRO LEU SER ASP PRO ILE LEU SEQRES 16 B 206 PHE ARG THR LEU LYS LEU GLU VAL LEU PHE ALA MODRES 4URT ASN A 95 ASN GLYCOSYLATION SITE MODRES 4URT ASN A 131 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET CA A1465 1 HET CL A1466 1 HET SO4 A1467 5 HET SO4 A1468 5 HET SO4 A1469 5 HET SO4 A1470 5 HET SO4 A1471 5 HET SO4 A1472 5 HET SO4 A1473 5 HET SO4 A1474 5 HET SO4 A1475 5 HET SO4 A1476 5 HET SO4 A1477 5 HET SO4 A1478 5 HET SO4 A1479 5 HET SO4 A1480 5 HET SO4 A1481 5 HET SO4 A1483 5 HET SO4 B2051 5 HET GOL B2052 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 6 CA CA 2+ FORMUL 7 CL CL 1- FORMUL 8 SO4 17(O4 S 2-) FORMUL 25 GOL C3 H8 O3 HELIX 1 1 PRO A 104 LEU A 108 5 5 HELIX 2 2 GLN A 180 TYR A 185 1 6 HELIX 3 3 GLN A 196 GLU A 200 5 5 HELIX 4 4 ARG A 226 ASN A 234 5 9 HELIX 5 5 SER A 235 VAL A 242 1 8 HELIX 6 6 ALA A 268 TYR A 272 5 5 HELIX 7 7 ASN A 353 SER A 360 1 8 HELIX 8 8 LYS B 1043 LEU B 1048 5 5 SHEET 1 AA 2 VAL A 56 ASN A 57 0 SHEET 2 AA 2 ALA A 275 CYS A 285 -1 O GLY A 283 N VAL A 56 SHEET 1 AB 2 TRP A 120 GLN A 121 0 SHEET 2 AB 2 ALA A 275 CYS A 285 -1 O VAL A 276 N TRP A 120 SHEET 1 AC 6 VAL A 202 THR A 204 0 SHEET 2 AC 6 VAL A 172 SER A 178 1 O PHE A 174 N VAL A 202 SHEET 3 AC 6 SER A 158 SER A 164 -1 O MET A 159 N TYR A 177 SHEET 4 AC 6 THR A 243 PHE A 251 -1 N THR A 245 O SER A 164 SHEET 5 AC 6 VAL A 132 PHE A 151 -1 O VAL A 132 N PHE A 251 SHEET 6 AC 6 LEU A 217 SER A 221 -1 O ILE A 218 N LEU A 149 SHEET 1 AD 7 VAL A 202 THR A 204 0 SHEET 2 AD 7 VAL A 172 SER A 178 1 O PHE A 174 N VAL A 202 SHEET 3 AD 7 SER A 158 SER A 164 -1 O MET A 159 N TYR A 177 SHEET 4 AD 7 THR A 243 PHE A 251 -1 N THR A 245 O SER A 164 SHEET 5 AD 7 VAL A 132 PHE A 151 -1 O VAL A 132 N PHE A 251 SHEET 6 AD 7 ALA A 275 CYS A 285 -1 N SER A 277 O GLN A 150 SHEET 7 AD 7 TRP A 120 GLN A 121 -1 O TRP A 120 N VAL A 276 SHEET 1 AE 2 LEU A 217 SER A 221 0 SHEET 2 AE 2 VAL A 132 PHE A 151 -1 O VAL A 147 N PHE A 220 SHEET 1 AF 7 VAL A 202 THR A 204 0 SHEET 2 AF 7 VAL A 172 SER A 178 1 O PHE A 174 N VAL A 202 SHEET 3 AF 7 SER A 158 SER A 164 -1 O MET A 159 N TYR A 177 SHEET 4 AF 7 THR A 243 PHE A 251 -1 N THR A 245 O SER A 164 SHEET 5 AF 7 VAL A 132 PHE A 151 -1 O VAL A 132 N PHE A 251 SHEET 6 AF 7 ALA A 275 CYS A 285 -1 N SER A 277 O GLN A 150 SHEET 7 AF 7 VAL A 56 ASN A 57 -1 O VAL A 56 N GLY A 283 SHEET 1 AG 2 ALA A 75 VAL A 79 0 SHEET 2 AG 2 SER A 90 CYS A 94 -1 O SER A 90 N VAL A 79 SHEET 1 AH 2 CYS A 294 ARG A 296 0 SHEET 2 AH 2 LEU A 302 CYS A 304 -1 O VAL A 303 N VAL A 295 SHEET 1 AI 2 THR A 310 ALA A 311 0 SHEET 2 AI 2 ARG A 317 CYS A 318 -1 O ARG A 317 N ALA A 311 SHEET 1 AJ 2 ARG A 349 PHE A 352 0 SHEET 2 AJ 2 GLY A 366 LEU A 369 -1 O VAL A 367 N ARG A 351 SHEET 1 AK 2 THR A 375 ALA A 376 0 SHEET 2 AK 2 TYR A 382 CYS A 383 -1 O TYR A 382 N ALA A 376 SHEET 1 AL 2 TYR A 387 ARG A 389 0 SHEET 2 AL 2 CYS A 401 ALA A 403 -1 O LYS A 402 N TYR A 388 SHEET 1 AM 2 VAL A 429 THR A 430 0 SHEET 2 AM 2 ARG A 436 CYS A 437 -1 O ARG A 436 N THR A 430 SHEET 1 AN 2 TYR A 441 GLN A 442 0 SHEET 2 AN 2 LYS A 453 GLU A 454 -1 O LYS A 453 N GLN A 442 SHEET 1 BA 3 VAL B 848 ALA B 854 0 SHEET 2 BA 3 VAL B 860 ALA B 865 -1 O ARG B 861 N VAL B 853 SHEET 3 BA 3 SER B 904 ALA B 907 -1 O TYR B 905 N VAL B 862 SHEET 1 BB 4 ASP B 899 THR B 900 0 SHEET 2 BB 4 LEU B 880 THR B 887 -1 O TYR B 881 N THR B 900 SHEET 3 BB 4 MET B 915 LYS B 924 -1 O GLU B 917 N ARG B 886 SHEET 4 BB 4 ARG B 927 SER B 928 -1 O ARG B 927 N LYS B 924 SHEET 1 BC 4 ASP B 899 THR B 900 0 SHEET 2 BC 4 LEU B 880 THR B 887 -1 O TYR B 881 N THR B 900 SHEET 3 BC 4 MET B 915 LYS B 924 -1 O GLU B 917 N ARG B 886 SHEET 4 BC 4 ALA B 935 THR B 938 -1 O ALA B 935 N PHE B 918 SHEET 1 BD 2 ARG B 927 SER B 928 0 SHEET 2 BD 2 MET B 915 LYS B 924 -1 O LYS B 924 N ARG B 927 SHEET 1 BE 3 LYS B 949 THR B 955 0 SHEET 2 BE 3 VAL B 963 GLN B 968 -1 O ILE B 964 N ILE B 954 SHEET 3 BE 3 THR B1006 ILE B1009 -1 O HIS B1007 N VAL B 965 SHEET 1 BF 4 GLU B 998 ILE B1000 0 SHEET 2 BF 4 ALA B 979 THR B 985 -1 O TYR B 980 N ILE B1000 SHEET 3 BF 4 MET B1017 ASN B1026 -1 O TYR B1019 N THR B 985 SHEET 4 BF 4 GLY B1029 VAL B1030 -1 O GLY B1029 N ASN B1026 SHEET 1 BG 4 GLU B 998 ILE B1000 0 SHEET 2 BG 4 ALA B 979 THR B 985 -1 O TYR B 980 N ILE B1000 SHEET 3 BG 4 MET B1017 ASN B1026 -1 O TYR B1019 N THR B 985 SHEET 4 BG 4 PHE B1039 ARG B1040 -1 O PHE B1039 N TYR B1018 SHEET 1 BH 2 GLY B1029 VAL B1030 0 SHEET 2 BH 2 MET B1017 ASN B1026 -1 O ASN B1026 N GLY B1029 SSBOND 1 CYS A 41 CYS A 51 1555 1555 2.03 SSBOND 2 CYS A 70 CYS A 94 1555 1555 2.03 SSBOND 3 CYS A 78 CYS A 91 1555 1555 2.03 SSBOND 4 CYS A 119 CYS A 152 1555 1555 2.03 SSBOND 5 CYS A 181 CYS A 203 1555 1555 2.03 SSBOND 6 CYS A 285 CYS A 294 1555 1555 2.04 SSBOND 7 CYS A 287 CYS A 304 1555 1555 2.03 SSBOND 8 CYS A 306 CYS A 315 1555 1555 2.03 SSBOND 9 CYS A 318 CYS A 338 1555 1555 2.03 SSBOND 10 CYS A 341 CYS A 350 1555 1555 2.03 SSBOND 11 CYS A 343 CYS A 368 1555 1555 2.03 SSBOND 12 CYS A 371 CYS A 380 1555 1555 2.03 SSBOND 13 CYS A 383 CYS A 401 1555 1555 2.03 SSBOND 14 CYS A 404 CYS A 416 1555 1555 2.03 SSBOND 15 CYS A 406 CYS A 423 1555 1555 2.03 SSBOND 16 CYS A 425 CYS A 434 1555 1555 2.03 SSBOND 17 CYS A 437 CYS A 451 1555 1555 2.03 LINK ND2 ASN A 95 C1 NAG C 1 1555 1555 1.50 LINK ND2 ASN A 131 C1 NAG E 1 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O PHE A 107 CA CA A1465 1555 1555 2.54 LINK OD1 ASP A 110 CA CA A1465 1555 1555 2.42 LINK OD1 ASN A 112 CA CA A1465 1555 1555 2.43 LINK OG1 THR A 118 CA CA A1465 1555 1555 2.35 LINK O THR A 118 CA CA A1465 1555 1555 2.49 LINK O SER A 277 CA CA A1465 1555 1555 2.44 CISPEP 1 ASN A 45 GLY A 46 0 1.89 CISPEP 2 ARG A 72 PRO A 73 0 -3.14 CISPEP 3 GLU A 123 ASN A 124 0 -5.34 CISPEP 4 PHE A 128 PRO A 129 0 -1.44 CISPEP 5 ASN B 872 GLN B 873 0 8.08 CISPEP 6 LYS B 874 THR B 875 0 -14.07 CISPEP 7 ASN B 925 ARG B 926 0 0.24 CISPEP 8 GLU B 957 GLY B 958 0 -3.87 CISPEP 9 PHE B 1049 ALA B 1050 0 -0.49 CRYST1 84.650 87.410 155.317 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011813 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006438 0.00000