PDB Short entry for 4USD HEADER TRANSFERASE 07-JUL-14 4USD TITLE HUMAN STK10 (LOK) WITH SB-633825 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE 10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 18-317; COMPND 5 SYNONYM: LYMPHOCYTE-ORIENTED KINASE, STK10; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.ELKINS,E.SALAH,M.SZKLARZ,F.VON DELFT,P.CANNING,J.RAYNOR, AUTHOR 2 C.BOUNTRA,A.M.EDWARDS,S.KNAPP REVDAT 5 19-SEP-18 4USD 1 REMARK REVDAT 4 24-JAN-18 4USD 1 AUTHOR REVDAT 3 20-JAN-16 4USD 1 JRNL REVDAT 2 04-NOV-15 4USD 1 JRNL REVDAT 1 22-JUL-15 4USD 0 JRNL AUTH J.M.ELKINS,V.FEDELE,M.SZKLARZ,K.R.ABDUL AZEEZ,E.SALAH, JRNL AUTH 2 J.MIKOLAJCZYK,S.ROMANOV,N.SEPETOV,X.P.HUANG,B.L.ROTH, JRNL AUTH 3 A.AL HAJ ZEN,D.FOURCHES,E.MURATOV,A.TROPSHA,J.MORRIS, JRNL AUTH 4 B.A.TEICHER,M.KUNKEL,E.POLLEY,K.E.LACKEY,F.L.ATKINSON, JRNL AUTH 5 J.P.OVERINGTON,P.BAMBOROUGH,S.MOLLER,D.J.PRICE,T.M.WILLSON, JRNL AUTH 6 D.H.DREWRY,S.KNAPP,W.J.ZUERCHER JRNL TITL COMPREHENSIVE CHARACTERIZATION OF THE PUBLISHED KINASE JRNL TITL 2 INHIBITOR SET. JRNL REF NAT.BIOTECHNOL. V. 34 95 2016 JRNL REFN ISSN 1087-0156 JRNL PMID 26501955 JRNL DOI 10.1038/NBT.3374 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 12247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 632 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 856 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.78000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : -1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.539 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.509 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 65.069 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4269 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4070 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5818 ; 1.489 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9356 ; 0.831 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 6.767 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;36.901 ;25.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 703 ;16.450 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.137 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4724 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 876 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2133 ; 2.073 ; 3.834 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2132 ; 2.073 ; 3.832 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2654 ; 3.572 ; 5.735 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2136 ; 1.972 ; 4.116 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 500 1 REMARK 3 1 B 1 B 500 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 4097 ; 3.68 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0460 10.6520 -11.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.6574 T22: 0.1375 REMARK 3 T33: 0.2102 T12: -0.0363 REMARK 3 T13: -0.0023 T23: 0.1315 REMARK 3 L TENSOR REMARK 3 L11: 15.1160 L22: 4.2503 REMARK 3 L33: 14.8913 L12: -3.0985 REMARK 3 L13: 1.1509 L23: 2.6179 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 1.1304 S13: 0.7680 REMARK 3 S21: -0.9484 S22: -0.2564 S23: 0.0874 REMARK 3 S31: -2.2610 S32: 0.4766 S33: 0.2686 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3740 5.7800 -13.9580 REMARK 3 T TENSOR REMARK 3 T11: 0.5193 T22: 0.5481 REMARK 3 T33: 0.4939 T12: 0.0271 REMARK 3 T13: -0.1998 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 3.2601 L22: 7.4686 REMARK 3 L33: 9.9099 L12: -4.8540 REMARK 3 L13: 2.0202 L23: -2.4985 REMARK 3 S TENSOR REMARK 3 S11: 0.2674 S12: 0.2217 S13: -0.3550 REMARK 3 S21: -0.5404 S22: -0.3597 S23: 0.8532 REMARK 3 S31: -0.3972 S32: -1.1185 S33: 0.0923 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6610 -10.9420 -10.6630 REMARK 3 T TENSOR REMARK 3 T11: 0.3514 T22: 0.1808 REMARK 3 T33: 0.0889 T12: 0.0382 REMARK 3 T13: -0.0411 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 4.9768 L22: 4.9340 REMARK 3 L33: 7.7698 L12: 0.9825 REMARK 3 L13: 1.3674 L23: 1.8495 REMARK 3 S TENSOR REMARK 3 S11: 0.2064 S12: 0.8500 S13: 0.1469 REMARK 3 S21: -0.1119 S22: -0.1405 S23: 0.4696 REMARK 3 S31: 0.5840 S32: 0.0172 S33: -0.0659 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1750 -20.2860 -17.7120 REMARK 3 T TENSOR REMARK 3 T11: 0.6175 T22: 0.1964 REMARK 3 T33: 0.2870 T12: 0.1282 REMARK 3 T13: -0.1730 T23: -0.1577 REMARK 3 L TENSOR REMARK 3 L11: 3.0288 L22: 3.6221 REMARK 3 L33: 7.0509 L12: 0.7650 REMARK 3 L13: 1.0257 L23: 1.1538 REMARK 3 S TENSOR REMARK 3 S11: 0.1737 S12: 0.6370 S13: -0.4420 REMARK 3 S21: 0.0011 S22: -0.0624 S23: 0.3316 REMARK 3 S31: 1.4805 S32: 0.1179 S33: -0.1112 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6660 -10.5750 19.6000 REMARK 3 T TENSOR REMARK 3 T11: 0.6060 T22: 0.2774 REMARK 3 T33: 0.2025 T12: -0.1169 REMARK 3 T13: 0.0870 T23: 0.0878 REMARK 3 L TENSOR REMARK 3 L11: 13.0393 L22: 12.2683 REMARK 3 L33: 11.3944 L12: 1.7639 REMARK 3 L13: 4.0315 L23: 3.5762 REMARK 3 S TENSOR REMARK 3 S11: 0.6915 S12: -1.5366 S13: -0.4874 REMARK 3 S21: 1.2623 S22: -0.8278 S23: 0.4534 REMARK 3 S31: 2.3850 S32: -0.2986 S33: 0.1363 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9020 -4.7560 21.5390 REMARK 3 T TENSOR REMARK 3 T11: 0.6367 T22: 0.5778 REMARK 3 T33: 0.5866 T12: -0.2395 REMARK 3 T13: 0.2279 T23: -0.0669 REMARK 3 L TENSOR REMARK 3 L11: 5.7133 L22: 8.4145 REMARK 3 L33: 6.2682 L12: -1.7565 REMARK 3 L13: -0.3044 L23: 1.0781 REMARK 3 S TENSOR REMARK 3 S11: -0.2234 S12: -0.8084 S13: -0.8760 REMARK 3 S21: 0.5621 S22: -0.2374 S23: 2.1200 REMARK 3 S31: 1.4724 S32: -0.9700 S33: 0.4608 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 113 B 182 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0340 11.4000 18.4130 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.1346 REMARK 3 T33: 0.0976 T12: 0.0176 REMARK 3 T13: -0.0086 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 5.4658 L22: 7.4410 REMARK 3 L33: 12.0628 L12: 0.1200 REMARK 3 L13: -1.8483 L23: 2.8981 REMARK 3 S TENSOR REMARK 3 S11: 0.1420 S12: -0.6028 S13: -0.1602 REMARK 3 S21: -0.1181 S22: -0.4522 S23: 0.7876 REMARK 3 S31: -0.7696 S32: -0.5350 S33: 0.3101 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 183 B 317 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4530 20.5520 25.7240 REMARK 3 T TENSOR REMARK 3 T11: 0.5167 T22: 0.1801 REMARK 3 T33: 0.1766 T12: -0.0615 REMARK 3 T13: 0.0696 T23: -0.1303 REMARK 3 L TENSOR REMARK 3 L11: 4.7529 L22: 5.2626 REMARK 3 L33: 10.7995 L12: 0.3417 REMARK 3 L13: -1.8879 L23: 0.5452 REMARK 3 S TENSOR REMARK 3 S11: 0.4379 S12: -0.6022 S13: 0.3191 REMARK 3 S21: 0.0748 S22: -0.3028 S23: 0.5738 REMARK 3 S31: -2.0710 S32: -0.1603 S33: -0.1351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4USD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1290061186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91730 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PIXEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.36000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 16 REMARK 465 MET A 17 REMARK 465 ARG A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 ARG A 21 REMARK 465 GLU A 22 REMARK 465 TYR A 23 REMARK 465 SER A 179 REMARK 465 ALA A 180 REMARK 465 LYS A 181 REMARK 465 ASN A 182 REMARK 465 LEU A 183 REMARK 465 LYS A 184 REMARK 465 THR A 185 REMARK 465 LEU A 186 REMARK 465 GLN A 187 REMARK 465 LYS A 188 REMARK 465 ARG A 189 REMARK 465 ASP A 190 REMARK 465 SER A 191 REMARK 465 PHE A 192 REMARK 465 ILE A 193 REMARK 465 GLU A 207 REMARK 465 THR A 208 REMARK 465 MET A 209 REMARK 465 LYS A 210 REMARK 465 ASP A 211 REMARK 465 THR A 212 REMARK 465 PRO A 213 REMARK 465 TYR A 214 REMARK 465 MET A 315 REMARK 465 GLU A 316 REMARK 465 GLU A 317 REMARK 465 SER B 16 REMARK 465 MET B 17 REMARK 465 ARG B 18 REMARK 465 LYS B 19 REMARK 465 SER B 20 REMARK 465 ARG B 21 REMARK 465 GLU B 22 REMARK 465 TYR B 23 REMARK 465 ALA B 46 REMARK 465 PHE B 47 REMARK 465 SER B 179 REMARK 465 ALA B 180 REMARK 465 LYS B 181 REMARK 465 ASN B 182 REMARK 465 LEU B 183 REMARK 465 LYS B 184 REMARK 465 THR B 185 REMARK 465 LEU B 186 REMARK 465 GLN B 187 REMARK 465 LYS B 188 REMARK 465 ARG B 189 REMARK 465 ASP B 190 REMARK 465 SER B 191 REMARK 465 PHE B 192 REMARK 465 ILE B 193 REMARK 465 GLU B 207 REMARK 465 THR B 208 REMARK 465 MET B 209 REMARK 465 LYS B 210 REMARK 465 ASP B 211 REMARK 465 THR B 212 REMARK 465 PRO B 213 REMARK 465 MET B 315 REMARK 465 GLU B 316 REMARK 465 GLU B 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 PHE A 47 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 49 CE NZ REMARK 470 LYS A 56 CE NZ REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 LYS A 70 CD CE NZ REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 LYS A 105 NZ REMARK 470 ARG A 152 CD NE CZ NH1 NH2 REMARK 470 ARG A 156 CD NE CZ NH1 NH2 REMARK 470 VAL A 178 CG1 CG2 REMARK 470 MET A 205 CG SD CE REMARK 470 LYS A 251 CD CE NZ REMARK 470 SER A 261 OG REMARK 470 LYS A 262 CD CE NZ REMARK 470 LYS A 272 CE NZ REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 29 CG OD1 OD2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 LYS B 70 CD CE NZ REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 ASP B 103 CG OD1 OD2 REMARK 470 LYS B 105 NZ REMARK 470 ARG B 152 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 156 CD NE CZ NH1 NH2 REMARK 470 VAL B 178 CG1 CG2 REMARK 470 MET B 205 CG SD CE REMARK 470 TYR B 214 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 251 CD CE NZ REMARK 470 SER B 261 OG REMARK 470 LYS B 262 CD CE NZ REMARK 470 LYS B 272 CE NZ REMARK 470 LYS B 311 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 46 -39.24 -151.57 REMARK 500 PHE A 47 33.71 -97.39 REMARK 500 GLU A 111 125.47 -29.34 REMARK 500 ASP A 157 50.00 -163.44 REMARK 500 VAL A 203 68.94 -102.21 REMARK 500 VAL A 204 146.09 -173.18 REMARK 500 ILE A 233 -57.18 65.87 REMARK 500 PRO A 242 -37.20 -38.58 REMARK 500 ALA B 60 133.50 -38.97 REMARK 500 GLU B 111 124.76 -28.88 REMARK 500 ASP B 157 46.98 -161.36 REMARK 500 ILE B 233 -55.20 66.75 REMARK 500 SER B 261 20.39 -76.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R09 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R09 B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4USE RELATED DB: PDB REMARK 900 HUMAN STK10 (LOK) WITH SB-633825 REMARK 900 RELATED ID: 4USF RELATED DB: PDB REMARK 900 HUMAN SLK WITH SB-440719 DBREF 4USD A 18 317 UNP O94804 STK10_HUMAN 18 317 DBREF 4USD B 18 317 UNP O94804 STK10_HUMAN 18 317 SEQADV 4USD SER A 16 UNP O94804 EXPRESSION TAG SEQADV 4USD MET A 17 UNP O94804 EXPRESSION TAG SEQADV 4USD SER B 16 UNP O94804 EXPRESSION TAG SEQADV 4USD MET B 17 UNP O94804 EXPRESSION TAG SEQRES 1 A 302 SER MET ARG LYS SER ARG GLU TYR GLU HIS VAL ARG ARG SEQRES 2 A 302 ASP LEU ASP PRO ASN GLU VAL TRP GLU ILE VAL GLY GLU SEQRES 3 A 302 LEU GLY ASP GLY ALA PHE GLY LYS VAL TYR LYS ALA LYS SEQRES 4 A 302 ASN LYS GLU THR GLY ALA LEU ALA ALA ALA LYS VAL ILE SEQRES 5 A 302 GLU THR LYS SER GLU GLU GLU LEU GLU ASP TYR ILE VAL SEQRES 6 A 302 GLU ILE GLU ILE LEU ALA THR CYS ASP HIS PRO TYR ILE SEQRES 7 A 302 VAL LYS LEU LEU GLY ALA TYR TYR HIS ASP GLY LYS LEU SEQRES 8 A 302 TRP ILE MET ILE GLU PHE CYS PRO GLY GLY ALA VAL ASP SEQRES 9 A 302 ALA ILE MET LEU GLU LEU ASP ARG GLY LEU THR GLU PRO SEQRES 10 A 302 GLN ILE GLN VAL VAL CYS ARG GLN MET LEU GLU ALA LEU SEQRES 11 A 302 ASN PHE LEU HIS SER LYS ARG ILE ILE HIS ARG ASP LEU SEQRES 12 A 302 LYS ALA GLY ASN VAL LEU MET THR LEU GLU GLY ASP ILE SEQRES 13 A 302 ARG LEU ALA ASP PHE GLY VAL SER ALA LYS ASN LEU LYS SEQRES 14 A 302 THR LEU GLN LYS ARG ASP SER PHE ILE GLY THR PRO TYR SEQRES 15 A 302 TRP MET ALA PRO GLU VAL VAL MET CYS GLU THR MET LYS SEQRES 16 A 302 ASP THR PRO TYR ASP TYR LYS ALA ASP ILE TRP SER LEU SEQRES 17 A 302 GLY ILE THR LEU ILE GLU MET ALA GLN ILE GLU PRO PRO SEQRES 18 A 302 HIS HIS GLU LEU ASN PRO MET ARG VAL LEU LEU LYS ILE SEQRES 19 A 302 ALA LYS SER ASP PRO PRO THR LEU LEU THR PRO SER LYS SEQRES 20 A 302 TRP SER VAL GLU PHE ARG ASP PHE LEU LYS ILE ALA LEU SEQRES 21 A 302 ASP LYS ASN PRO GLU THR ARG PRO SER ALA ALA GLN LEU SEQRES 22 A 302 LEU GLU HIS PRO PHE VAL SER SER ILE THR SER ASN LYS SEQRES 23 A 302 ALA LEU ARG GLU LEU VAL ALA GLU ALA LYS ALA GLU VAL SEQRES 24 A 302 MET GLU GLU SEQRES 1 B 302 SER MET ARG LYS SER ARG GLU TYR GLU HIS VAL ARG ARG SEQRES 2 B 302 ASP LEU ASP PRO ASN GLU VAL TRP GLU ILE VAL GLY GLU SEQRES 3 B 302 LEU GLY ASP GLY ALA PHE GLY LYS VAL TYR LYS ALA LYS SEQRES 4 B 302 ASN LYS GLU THR GLY ALA LEU ALA ALA ALA LYS VAL ILE SEQRES 5 B 302 GLU THR LYS SER GLU GLU GLU LEU GLU ASP TYR ILE VAL SEQRES 6 B 302 GLU ILE GLU ILE LEU ALA THR CYS ASP HIS PRO TYR ILE SEQRES 7 B 302 VAL LYS LEU LEU GLY ALA TYR TYR HIS ASP GLY LYS LEU SEQRES 8 B 302 TRP ILE MET ILE GLU PHE CYS PRO GLY GLY ALA VAL ASP SEQRES 9 B 302 ALA ILE MET LEU GLU LEU ASP ARG GLY LEU THR GLU PRO SEQRES 10 B 302 GLN ILE GLN VAL VAL CYS ARG GLN MET LEU GLU ALA LEU SEQRES 11 B 302 ASN PHE LEU HIS SER LYS ARG ILE ILE HIS ARG ASP LEU SEQRES 12 B 302 LYS ALA GLY ASN VAL LEU MET THR LEU GLU GLY ASP ILE SEQRES 13 B 302 ARG LEU ALA ASP PHE GLY VAL SER ALA LYS ASN LEU LYS SEQRES 14 B 302 THR LEU GLN LYS ARG ASP SER PHE ILE GLY THR PRO TYR SEQRES 15 B 302 TRP MET ALA PRO GLU VAL VAL MET CYS GLU THR MET LYS SEQRES 16 B 302 ASP THR PRO TYR ASP TYR LYS ALA ASP ILE TRP SER LEU SEQRES 17 B 302 GLY ILE THR LEU ILE GLU MET ALA GLN ILE GLU PRO PRO SEQRES 18 B 302 HIS HIS GLU LEU ASN PRO MET ARG VAL LEU LEU LYS ILE SEQRES 19 B 302 ALA LYS SER ASP PRO PRO THR LEU LEU THR PRO SER LYS SEQRES 20 B 302 TRP SER VAL GLU PHE ARG ASP PHE LEU LYS ILE ALA LEU SEQRES 21 B 302 ASP LYS ASN PRO GLU THR ARG PRO SER ALA ALA GLN LEU SEQRES 22 B 302 LEU GLU HIS PRO PHE VAL SER SER ILE THR SER ASN LYS SEQRES 23 B 302 ALA LEU ARG GLU LEU VAL ALA GLU ALA LYS ALA GLU VAL SEQRES 24 B 302 MET GLU GLU HET R09 A 500 35 HET R09 B 500 35 HETNAM R09 4-{5-(6-METHOXYNAPHTHALEN-2-YL)-1-METHYL-2-[2-METHYL-4- HETNAM 2 R09 (METHYLSULFONYL)PHENYL]-1H-IMIDAZOL-4-YL}PYRIDINE FORMUL 3 R09 2(C28 H25 N3 O3 S) HELIX 1 1 ASP A 31 VAL A 35 1 5 HELIX 2 2 SER A 71 THR A 87 1 17 HELIX 3 3 VAL A 118 ASP A 126 1 9 HELIX 4 4 THR A 130 LYS A 151 1 22 HELIX 5 5 LYS A 159 GLY A 161 5 3 HELIX 6 6 TYR A 216 ILE A 233 1 18 HELIX 7 7 ASN A 241 SER A 252 1 12 HELIX 8 8 THR A 259 TRP A 263 5 5 HELIX 9 9 SER A 264 LEU A 275 1 12 HELIX 10 10 SER A 284 GLU A 290 1 7 HELIX 11 11 HIS A 291 SER A 296 1 6 HELIX 12 12 ASN A 300 VAL A 314 1 15 HELIX 13 13 ASP B 31 VAL B 35 1 5 HELIX 14 14 SER B 71 THR B 87 1 17 HELIX 15 15 VAL B 118 ASP B 126 1 9 HELIX 16 16 THR B 130 LYS B 151 1 22 HELIX 17 17 LYS B 159 GLY B 161 5 3 HELIX 18 18 TYR B 216 ILE B 233 1 18 HELIX 19 19 ASN B 241 SER B 252 1 12 HELIX 20 20 THR B 259 TRP B 263 5 5 HELIX 21 21 SER B 264 LEU B 275 1 12 HELIX 22 22 SER B 284 GLU B 290 1 7 HELIX 23 23 HIS B 291 SER B 296 1 6 HELIX 24 24 ASN B 300 VAL B 314 1 15 SHEET 1 AA 6 VAL A 26 ARG A 28 0 SHEET 2 AA 6 LEU A 96 HIS A 102 1 O ALA A 99 N ARG A 27 SHEET 3 AA 6 LYS A 105 GLU A 111 -1 O LYS A 105 N HIS A 102 SHEET 4 AA 6 LEU A 61 GLU A 68 -1 O ALA A 63 N ILE A 110 SHEET 5 AA 6 LYS A 49 ASN A 55 -1 O LYS A 49 N VAL A 66 SHEET 6 AA 6 TRP A 36 ASP A 44 -1 O GLU A 37 N LYS A 54 SHEET 1 AB 3 GLY A 116 ALA A 117 0 SHEET 2 AB 3 VAL A 163 MET A 165 -1 N MET A 165 O GLY A 116 SHEET 3 AB 3 ILE A 171 LEU A 173 -1 O ARG A 172 N LEU A 164 SHEET 1 BA 6 VAL B 26 ARG B 28 0 SHEET 2 BA 6 LEU B 96 HIS B 102 1 O ALA B 99 N ARG B 27 SHEET 3 BA 6 LYS B 105 GLU B 111 -1 O LYS B 105 N HIS B 102 SHEET 4 BA 6 LEU B 61 GLU B 68 -1 O ALA B 63 N ILE B 110 SHEET 5 BA 6 LYS B 49 ASN B 55 -1 O TYR B 51 N ALA B 64 SHEET 6 BA 6 TRP B 36 ASP B 44 -1 O GLU B 37 N LYS B 54 SHEET 1 BB 3 GLY B 116 ALA B 117 0 SHEET 2 BB 3 VAL B 163 MET B 165 -1 N MET B 165 O GLY B 116 SHEET 3 BB 3 ILE B 171 LEU B 173 -1 O ARG B 172 N LEU B 164 CISPEP 1 VAL A 204 MET A 205 0 -11.06 CISPEP 2 VAL B 204 MET B 205 0 -13.48 SITE 1 AC1 12 LEU A 42 ALA A 63 LYS A 65 ILE A 108 SITE 2 AC1 12 ILE A 110 GLU A 111 CYS A 113 ALA A 117 SITE 3 AC1 12 ASP A 119 ALA A 120 LEU A 164 PHE A 176 SITE 1 AC2 12 LEU B 42 ALA B 63 LYS B 65 ILE B 108 SITE 2 AC2 12 ILE B 110 GLU B 111 CYS B 113 ALA B 117 SITE 3 AC2 12 ASP B 119 ALA B 120 LEU B 164 PHE B 176 CRYST1 46.720 99.600 151.770 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021404 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006589 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.993296 -0.115590 0.001644 0.09324 1 MTRIX2 2 -0.115546 -0.993159 -0.016845 3.54366 1 MTRIX3 2 0.003580 0.016542 -0.999857 7.58915 1